Pgri012784.1
Basic Information
- Insect
- Pollenia griseotomentosa
- Gene Symbol
- -
- Assembly
- GCA_963931875.1
- Location
- OZ007560.1:217576493-217586322[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.3e-05 0.0022 20.1 0.6 2 23 240 262 231 262 0.97 2 11 0.0047 0.77 12.1 2.0 1 23 283 306 283 306 0.96 3 11 0.13 22 7.5 1.1 1 23 322 345 322 345 0.96 4 11 0.44 73 5.9 2.5 1 23 352 375 352 375 0.95 5 11 3.8e-06 0.00064 21.8 1.1 2 23 478 500 478 500 0.96 6 11 5.8e-05 0.0097 18.1 4.5 2 23 508 530 507 530 0.95 7 11 0.042 6.9 9.1 4.0 1 23 557 579 557 580 0.95 8 11 0.0001 0.017 17.3 1.0 1 23 586 608 586 608 0.98 9 11 1.1e-06 0.00018 23.6 3.1 1 23 614 636 614 636 0.99 10 11 6.2e-08 1e-05 27.4 1.1 1 23 642 664 642 664 0.98 11 11 0.00022 0.036 16.3 0.4 2 22 671 691 670 694 0.89
Sequence Information
- Coding Sequence
- atggaaggaAACGCTCTACAAAAGTGTAGGACATGCCTTAACACAAGTACAAAACTATTAGCACTTACGGAACGAGCAAAGGGATGTCATGGTCGTACCTACAATCAACTATTTCAAGAATATACAAAACTGGAGGAGtgtGACCCAAATTATGAGCGTCTCATGCCCCATAATTTGTGTAATGCCTGCTGTCGTCAGTTAAGGAATATttacatcttcatttgtcaggcaaaaaaatgcaataaaaaacttttaaaaacaatttctacaCAATTGGATTGTTTGGAAGAAAAAGCTATTTgtataaatcaaaatgaaatGGAACATTCTTTTGATATCAAGGAGGAAAATGAGACTAATGACTGCTACCAAAAGTTGggaacaacaaaaacaactcaAATTGATTGTTTGGaagaaaaaacaattgattttttggaaaatgagAGGAACTTGGAAAAGTCTTTTGATATCAAagacgaaaataaaaataaagattgtTCCACTTTAATGGATTTAAAAGCAGAAGATATTGCAATAGATGACTTAAAAGCTATAAACCCAATAATGCTGTTGCAAACGGAATTAATGGAACAAGCAACTGATGATGACACATCATTTCGGATAGATGATAATAATGATGAACCAAAAGTTGATCAAAATGActcaaatttaaaagttaaaaatgaggAGAAGTCTTCAAAATCTCAATCTAATCTAGAGTGTCccatatgtaataaaataatgaGCAGACGTTATAATCTATTAGCACATATGCGTAAAAAACACCAAGTTGAAGAGCCCAATAAACTTTTAGACGACAGTCAAGAGTTACAATCAGCTAACACATTTAAGTGTAAAATATGTTCCAGCAAATTTGTTAATAGAAAGGATTATTTAGATCATATAAAGGATAAACATTATAATAATGGAAAAGTGGGAAAAGAGGAACAGAAAAATCAACTTTACAGATGTTATTTATGTGAATACAAAGCTAAGTCCTCAGCGGCTTTAAACTACCACAAACTTTCAAAACATGGCTGTGAAAAGGAtcaatttaaatgcaaattttgttcaaaagtaTGTTTGGGGAAATTGGAATTAATAAGGCATGTTAAAAATGAACACAAGGAATTGATAAAAACTCTCAAAGCTAAATCTAAAAGTAAAGTGGAGGAAGGGGATGCATTAAATGATGTTAGTACTTACAAACAAAATGAACATTTATTAGATCTAGGGCAAAATGAAGATTCTTCCAGCAATGATGACATTCCATTGGCAAAACGTAACATTAAATATCAATTACCAACAGATTTAAGCACTAACACGAAAATGATTGTGGAAAAAGAGGAAGTTAGTGATGAAGAGTTTATAAgagatttgtttaatattaaaaacaaaccatCTAAATCCTTGACAAAATCCTTAGCCAGGCGCTGTAATGAATGTGGCAAAGTTTATAAAAACCACAGCGCTCTTTACGCCCATCAACGTTATGTACATATTAGTGAAGAGAAACGATGTGTTTGTCCACATTgtggtaaaaaattaaaacgaaaaactaGTCTTACAGTTCACATTAAAAATACTCATGTTGCTAAAAATTCCACAGAAACTAAGAAGCCACTAACAGCAGCAATAGAAAAAACTCCTAaagtaaaagagaaaaaatttatgtgtacggAATGTTCGTATGTTTGTGGTACCATAACAACATTAACATATCATATAAATCGTCATCATACGGGTGAAAAACCTTATAAATGTGATATTTGTTTTAAAGCTTTTGTAGTACCGCATGACTTAAAACTTCATCGTTACGTACACTTCGATGAAAAGCCTTACAAATGTTCAATTTGTTCAAAGGGTTTTCAGGATAAAGCTCATCTGAGAAAACATCAACGTATACACAGTAGCGTACCACCTTATCAGTGTGATGAATGTGGTAAACGTTTTACTCAATCGTATAATCTATTAGCCCACAAAAGGCTACATATgaaacacaaaaacttaaattgtaCAATTTGtgataaagtatttgaaaacttttctttGTTAAATATGCATCGTATCAAAGAAAATCATCAGGATTAA
- Protein Sequence
- MEGNALQKCRTCLNTSTKLLALTERAKGCHGRTYNQLFQEYTKLEECDPNYERLMPHNLCNACCRQLRNIYIFICQAKKCNKKLLKTISTQLDCLEEKAICINQNEMEHSFDIKEENETNDCYQKLGTTKTTQIDCLEEKTIDFLENERNLEKSFDIKDENKNKDCSTLMDLKAEDIAIDDLKAINPIMLLQTELMEQATDDDTSFRIDDNNDEPKVDQNDSNLKVKNEEKSSKSQSNLECPICNKIMSRRYNLLAHMRKKHQVEEPNKLLDDSQELQSANTFKCKICSSKFVNRKDYLDHIKDKHYNNGKVGKEEQKNQLYRCYLCEYKAKSSAALNYHKLSKHGCEKDQFKCKFCSKVCLGKLELIRHVKNEHKELIKTLKAKSKSKVEEGDALNDVSTYKQNEHLLDLGQNEDSSSNDDIPLAKRNIKYQLPTDLSTNTKMIVEKEEVSDEEFIRDLFNIKNKPSKSLTKSLARRCNECGKVYKNHSALYAHQRYVHISEEKRCVCPHCGKKLKRKTSLTVHIKNTHVAKNSTETKKPLTAAIEKTPKVKEKKFMCTECSYVCGTITTLTYHINRHHTGEKPYKCDICFKAFVVPHDLKLHRYVHFDEKPYKCSICSKGFQDKAHLRKHQRIHSSVPPYQCDECGKRFTQSYNLLAHKRLHMKHKNLNCTICDKVFENFSLLNMHRIKENHQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01235985;
- 90% Identity
- iTF_01235985;
- 80% Identity
- -