Pame027286.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- -
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000484.1:1202011-1212257[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.3e-05 0.0015 20.1 0.6 2 23 242 264 233 264 0.97 2 11 0.0045 0.52 12.1 1.6 1 23 285 308 285 308 0.96 3 11 0.095 11 8.0 1.2 1 23 324 347 324 347 0.96 4 11 1.8 2.1e+02 3.9 1.7 1 23 354 377 354 377 0.77 5 11 3.8e-06 0.00043 21.8 1.1 2 23 476 498 476 498 0.96 6 11 3.9e-06 0.00044 21.8 4.9 2 23 506 528 505 528 0.94 7 11 0.041 4.7 9.1 4.0 1 23 555 577 555 578 0.95 8 11 9.9e-05 0.011 17.3 1.0 1 23 584 606 584 606 0.98 9 11 1.1e-06 0.00012 23.6 3.1 1 23 612 634 612 634 0.99 10 11 6.1e-08 6.9e-06 27.4 1.1 1 23 640 662 640 662 0.98 11 11 0.00075 0.085 14.6 0.3 2 22 669 689 668 692 0.88
Sequence Information
- Coding Sequence
- ATGGAAGAAAACTCTCTACAAAAGTGCAGGACATGCCTTAACACCAGTACGAAACTATTAGCTCTTACGGAACGTGCAAAGCGATGTCATGGTCGTACCTACAATCAACTACTTCAAGAATATACAAAACTCGAGGAGTGTGACCCAAATTATGAGCGTCTTATGCCCCATTATTTGTGTAATGCCTGCTGTCGTCAGTTGAGGAATATTTACATCTTCATTTGTCAGGCCAAAAAATGCAATAAAAAACTTTTAAAAACAATTTCTACACAATTGGATTGTTTGGAAGAAAAAGCTATTTGTATAAATCAAAACGAAAATGAATTGGAACACTCTTTTGATATCAAGGAGGAAAATGAGACTAATGACTGCAACCAAAAGTTGGGAACAACAAAAACAACGCAAATGGATTGTTTGGAAGAAAAAACAATTGATTTTTTCGAAAATGAGAGGAAAATGGAAAAGTCTTTTGATATAAAAGAGGAAAATAAAAATAAAGATTGTTCTACATTAATGGTATTAAAAACAGAAGATATTACAATAGATGACTTAAAAGCTATAAACCCAATAATGCTGTTGCAAACGGAAATAATGGAACAAGCAACTGATGATGACACATCATTTCGGATAGACGATAATAATGATGAACCAAAAGTTGATCAAAATTACTCAAATTTAAATGATAAGAATGAGGAGAAGTCTTCAAAATCTCAATCCAATCTAGAGTGCCCCATATGTAATAAAATAATGAGCAGACGTTATAATCTATTAGCACATATGCGTAAAAAGCATCAAGTTGAAGAGCCCAATAAACTTTTAGACGACAGTCAAGAGTTACAACCAACTAACACATTTAAGTGTAAAATATGTTCCAGCAAATTTGTCGATAGAAAGGATTATTTAGATCATATAAAGGATAAACATTATAATAATGGAAAAGTGGGAAAACAAGAACAGAACAATCAACTTTACAAATGTTATTTATGTGAATACAAAGCTAAGTCCTCAGCGGCCTTAAACTATCACAAACTTTCAAAACATGGTTGCGAAAAGGATCAATTTAAATGCAAATTTTGTCCAAAAGTATGTTTGGGGAAATTGGAAATAATAAGGCATGTTAAAAATGAACACAAGGAATTGATAAAATCTCTCAAAGCTAAAAGTAAAGTGGAAGAAGGGGATGGATTAAATGATGTTACTACTAACAAACAAAATGAACATTTATTAGATGAAGGAGAAAATGAAGATACTTCCAGTAATGATGACATTCCTTTGGCAAAACGTAAATATCAATTACAAACAGATTTAAGCACGAACACGAAAATGAAAGTAGAAGAAGAGGAAGTTAGTGATGAAGAGTTTATAAGAGATTTGTTTAATATTAAAAACAAACCATCTAAATCCTTGACAAAATCCTTAGCCAGACGCTGTAATGAATGTGGCAAAGTTTATAAAAACCACAGCGCTCTTTATGCCCATCAACGTTATGTACATATTAGTGAAGAGAAACGATGTGCGTGTCCACATTGTGGTAAAAAATTTAAACGAAAAACTAGTCTTACGGTTCACATTAAAAATAGTCATGTTGCTAAAAATTCAACCGAAACAAAGAAGCCATTAACAACAGCAATAGAAAAAACTCCTAAAGCTAAAGAGAAAAAATTTATGTGTACAGAATGTTCGTATGTTTGTGGTACCATAACTACACtaacatatcatataaatcgtcatcatacgggtgaaaaaccttataaatgtgatatttgttttaaagcttttgtagtaccgcatgaccttaaacttcatcgttacgtacacttcgatgaaaagccttacaaatgttcaatttgttcaaagggttttcaggataaagcccatctgagaaaacatcaacgtatacacagtagtgtaccaccttatcagtgtgatgaatgtggtaaacgttttactcagtcttataatctattagcccacaaaaggctacataTGAAACACAAAAACTTAAATTGTACAATTTGTGATAAAGTATTTGAAAACTTTGCTTTGTTAAATATGCATCGTATCAAAGAAAATCATCAGGATTAA
- Protein Sequence
- MEENSLQKCRTCLNTSTKLLALTERAKRCHGRTYNQLLQEYTKLEECDPNYERLMPHYLCNACCRQLRNIYIFICQAKKCNKKLLKTISTQLDCLEEKAICINQNENELEHSFDIKEENETNDCNQKLGTTKTTQMDCLEEKTIDFFENERKMEKSFDIKEENKNKDCSTLMVLKTEDITIDDLKAINPIMLLQTEIMEQATDDDTSFRIDDNNDEPKVDQNYSNLNDKNEEKSSKSQSNLECPICNKIMSRRYNLLAHMRKKHQVEEPNKLLDDSQELQPTNTFKCKICSSKFVDRKDYLDHIKDKHYNNGKVGKQEQNNQLYKCYLCEYKAKSSAALNYHKLSKHGCEKDQFKCKFCPKVCLGKLEIIRHVKNEHKELIKSLKAKSKVEEGDGLNDVTTNKQNEHLLDEGENEDTSSNDDIPLAKRKYQLQTDLSTNTKMKVEEEEVSDEEFIRDLFNIKNKPSKSLTKSLARRCNECGKVYKNHSALYAHQRYVHISEEKRCACPHCGKKFKRKTSLTVHIKNSHVAKNSTETKKPLTTAIEKTPKAKEKKFMCTECSYVCGTITTLTYHINRHHTGEKPYKCDICFKAFVVPHDLKLHRYVHFDEKPYKCSICSKGFQDKAHLRKHQRIHSSVPPYQCDECGKRFTQSYNLLAHKRLHMKHKNLNCTICDKVFENFALLNMHRIKENHQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237005;
- 90% Identity
- iTF_01237005;
- 80% Identity
- -