Pgri046774.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pollenia griseotomentosa
Gene Symbol
-
Assembly
GCA_963931875.1
Location
OZ007563.1:191243308-191245939[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 5.2 8.5e+02 2.5 1.8 2 12 223 233 222 236 0.88
2 16 0.021 3.5 10.0 4.2 1 23 248 270 248 270 0.93
3 16 2.3e-05 0.0038 19.4 0.4 1 23 276 298 276 298 0.98
4 16 9.6e-06 0.0016 20.6 1.2 1 23 303 325 303 325 0.98
5 16 4.9e-05 0.0082 18.3 4.0 1 23 331 353 331 353 0.98
6 16 0.00053 0.088 15.1 0.8 1 23 359 381 359 381 0.97
7 16 0.00022 0.036 16.3 4.4 1 23 387 409 387 409 0.98
8 16 0.0033 0.55 12.6 1.9 1 23 415 438 415 438 0.96
9 16 0.00099 0.16 14.2 1.1 2 23 511 532 510 532 0.96
10 16 0.00039 0.065 15.5 1.5 1 23 538 560 538 560 0.99
11 16 0.0009 0.15 14.3 0.3 1 23 566 588 566 588 0.98
12 16 1.1e-06 0.00018 23.5 2.2 3 23 596 616 594 616 0.96
13 16 0.023 3.8 9.9 4.5 1 23 622 644 622 644 0.98
14 16 0.00026 0.043 16.0 1.1 1 23 650 672 650 672 0.99
15 16 0.0042 0.7 12.2 3.0 1 23 678 700 678 700 0.98
16 16 9.2e-05 0.015 17.5 6.1 1 23 706 729 706 729 0.98

Sequence Information

Coding Sequence
ATGGATAGTGAAATATGTTTAACTTGCCTGGACAAACCCAAAAAATCACATAAACTTGATGAAATTCTAttagaaaatcttaaaatattagaaatactCTATCAACTTGTACCTCTACTTTTGGAACAACCAGAGTTCTTGCTACCTGACCGAATATGTGCTAAATGTgtagaaaaacttattttatcttataaatttcaaaaacaatgtTTGGATTCAGTCCAAAGTTGGCATAAAAAATGGTCAACAAGTCGTTCTACAAATGAAAGCTCTCACAAAATAGCTCAACCGAAATTTAAAATCGAAGAAGTGGAAATGGCAAACGAGTATCAAAGTAATGAAGAAGAAAATTCTATTGAATCTGTAGTTGATATTAAGCAGGATCTTCAAATGTCATTTCAAGATATAACAATGGATTCTTTGGCCATTAGTAAGGAAGAGTTGCCTTTAGAAAAAATTGTCAAGGATTCTCTGGTAGAGGAGGATCCAATTTTGGAAATACCACTTGAACCAATTACAAATAAATCTCAAGAAATAGATAAAAATGTACCTGAAGGTATTGGAAATGAATTGAACGAAGAATTGGAAAATCAAGAAAGTTGtaaaaaaaatttgccagaCAACTACCAATCTGAAGATGCTATTGATTCATCCAATGATTCAAGTCAATgttatatatgcaaaaaaaagtataaacaaTTAGCCTGTCATATGACAAAAGCtcattttaaaacgtatttataTAAATGTGAAAAATGTGAAAAAGGTTTTGATTCACACGAACTCTATATAAGACACTGTAATATACATTTAGGTATTAAATCCTTTCCCTGTCCACAATGTGACAAAgggtttgattataaaaacacattaaggcTACATTTATTAAGCCATTCAACCGAGACATTTTCTTGTGCAATATGTGACAAAAAATTCCGACGTACGGACGTTTTAAGACAGCATATGTTACGTCATGAAGAGGAAAAAACATTCCATTGTACAAAATGTGATAGAAGCTTTAAGGGTTACGCTGAGTATATAAAACACATGAAGACACATAACGACCAGGAGGGCTACGATTGTCATCTTTGTGGTGCCCATTTGGCCTCAGCGTCATCCTTGAAAAGCCATCAACTTGTACATTCTGGTGAAAAACCTTTTAAATGTCAATATTGTGAAAAGCGCTTCAAAACTCTAAGAAATACGAAACGTCATGAAGAAACCCATAAAGGCGATAAACCATATAAATGTCTTAATTGTtccacaaattttcaaaaaagcagTGATCTGAAAGAGCATAAAAAACTTGctcataaggaaaaaaattgtgAACTTACTGAGGAATCCACAACAGATTCCTTAATAGAAGAAGGAAAGAAATCTTTGGCCACAATGTTAAAAGATGAAAACGATGAAgacaatttaaatataaaattagaaaataatataaatagAGCTCAACAATTACAAGCTTCTAACGATGTTATTAAAggacaaaaaagtaaaacaataacGTCAACGGAATCTAATCAATGTGATATCTGCaaacatgtatttaaaaattcccAAGGTTTAGCGGTTCATAGGTCTTTACATTTCAAAAAGTATTTGTACCAGTGTGATAAATGCGATAAAGGTTTTAATGAAGAGGAATTTTACATAAAACATCGTAATCGTCACTTAGGCATAAAAGCCTTTAAGTGTAATCAATGTGACAAAGCCTTTGAAGCAAACAGTATTCTTAATCAACATTTAATCTCTCATTCGACATTAACGCCACATCTATGTACAGTTTGTGGCAAAAGTTTTCGTCGTATTGATGGTTTAAGGCAGCATATGCGTCGTCATGGTGATGAAAAACCATTCCAATGTTCGGTATGCTCAAAAAGCTTTAAGTGTCTTTCGGATAAATTGAAACATATGATTAAGCATGGTGATAAAAAACGCTATGAATGTCATATTTGTACTACACGTTTAGCCTCCTCAGAATCTTTATCCCAGCATCTAATGACACACACGGGTGAGAGACCTTATAAATGTGGATTTTGCGAAAAGAGctttatTTCCTTGTCTAATATGAGATGTCACGAGAGAATTCATACTGGCGAAAAACCATATAAATGTGATTACTGTTGGAAAACTTTTCGTCAAAGTAATGATTGTAAAAAGCATATGAGACGTATGCATAAAACTGAAATGTCTAATGCAAAACCTGAACATATTAAGGAACATGTAGAAGAGAACTAA
Protein Sequence
MDSEICLTCLDKPKKSHKLDEILLENLKILEILYQLVPLLLEQPEFLLPDRICAKCVEKLILSYKFQKQCLDSVQSWHKKWSTSRSTNESSHKIAQPKFKIEEVEMANEYQSNEEENSIESVVDIKQDLQMSFQDITMDSLAISKEELPLEKIVKDSLVEEDPILEIPLEPITNKSQEIDKNVPEGIGNELNEELENQESCKKNLPDNYQSEDAIDSSNDSSQCYICKKKYKQLACHMTKAHFKTYLYKCEKCEKGFDSHELYIRHCNIHLGIKSFPCPQCDKGFDYKNTLRLHLLSHSTETFSCAICDKKFRRTDVLRQHMLRHEEEKTFHCTKCDRSFKGYAEYIKHMKTHNDQEGYDCHLCGAHLASASSLKSHQLVHSGEKPFKCQYCEKRFKTLRNTKRHEETHKGDKPYKCLNCSTNFQKSSDLKEHKKLAHKEKNCELTEESTTDSLIEEGKKSLATMLKDENDEDNLNIKLENNINRAQQLQASNDVIKGQKSKTITSTESNQCDICKHVFKNSQGLAVHRSLHFKKYLYQCDKCDKGFNEEEFYIKHRNRHLGIKAFKCNQCDKAFEANSILNQHLISHSTLTPHLCTVCGKSFRRIDGLRQHMRRHGDEKPFQCSVCSKSFKCLSDKLKHMIKHGDKKRYECHICTTRLASSESLSQHLMTHTGERPYKCGFCEKSFISLSNMRCHERIHTGEKPYKCDYCWKTFRQSNDCKKHMRRMHKTEMSNAKPEHIKEHVEEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01235962;
90% Identity
iTF_01237897;
80% Identity
-