Pame001554.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pollenia amentaria
Gene Symbol
-
Assembly
GCA_943735935.1
Location
CALSEV010000018.1:753339-755964[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.015 1.7 10.5 2.4 2 23 220 242 219 242 0.95
2 16 0.055 6.2 8.7 3.1 1 23 248 270 248 270 0.93
3 16 3.4e-05 0.0039 18.8 0.7 1 23 276 298 276 298 0.97
4 16 1.1e-05 0.0012 20.4 1.0 1 23 303 325 303 325 0.98
5 16 0.00024 0.028 16.1 2.8 1 23 331 353 331 353 0.98
6 16 0.0017 0.2 13.4 0.5 1 23 359 381 359 381 0.97
7 16 2.1e-05 0.0024 19.5 4.6 1 23 387 409 387 409 0.99
8 16 0.053 6 8.8 4.9 1 23 415 438 415 438 0.96
9 16 0.00071 0.081 14.6 0.6 2 23 509 530 508 530 0.96
10 16 0.0047 0.54 12.1 3.2 1 23 536 558 536 558 0.98
11 16 0.00089 0.1 14.3 0.3 1 23 564 586 564 586 0.98
12 16 1.1e-06 0.00012 23.5 2.2 3 23 594 614 592 614 0.96
13 16 0.023 2.6 9.9 4.5 1 23 620 642 620 642 0.98
14 16 0.00026 0.029 16.0 1.1 1 23 648 670 648 670 0.99
15 16 0.0042 0.48 12.2 3.0 1 23 676 698 676 698 0.98
16 16 9.1e-05 0.01 17.5 6.1 1 23 704 727 704 727 0.98

Sequence Information

Coding Sequence
ATGGATAGTGAAATATGCTTAACTTGCCTCGACAAACCCAAAAAATCACATAAACTTGATGAAATTCTATTAGAAAATCTTAAAATATTAGAATTACTCTATCAGCTTGTACCTCTGCTTTTGGAACAACCGGAATTCTTGCTACCTGACCGAATATGTGCTAAATGTGTAGAAAAACTTATTATATCTTATAAATTTCAAAAACAATGTTTGGATTCAGTTCAAAGTTGGCATAAAATATCTACAAAAGAAAGCTTTCGCAAAATGACTCAGCCGAAATTTAAAATTGAAGAAGTGGAAATGGAAAATGAGTATCAAAGTAATGAAGAAGAAAATTCTATTGACTCTGTAGTTAGTATTAAGCAGGATTTTCAGATATCATTTCAAGATATGACATTGGATTCTTTGGCCATTAATAAGGAAGAATTGCCTTTAGAGCAAATTGTCAATAATTCTCTGGTAGAGGACGATCCAATTTTAGAAAAACAAGTTGAATCTGTTACAAATCTAAATAAATCTAAAGGAATGCATGAACATGTTCCTGAAAGCAATGCAAATAAACTGAACGAAGAATTGGAAAATCAAGAAAGTTGTAACAAAATTTTGCCAGAAAACTACCAATTTGAAGATGCTATTGATTCATCTAATGATTCAAATCAATGTTATATATGCAAAAAAAAATTTAAGCAACCCCAAGGTTTAGCCTGTCATATGACAAAAGCTCATTTTAAAACGTATTTATATCAATGTGAAAAATGTGAAAAAGGGTTTGATGTACATGAACTCTATATAAGACACTGTAATATACATTTAGGTATTAAACCATTTCCCTGTCCACAATGTGACAAAGCTTTTGATTATAAAAATACATTAAGGTTACATTTATTTAGCCATTCAACCGAGACATTTTCTTGTGCAATATGTGACAAAAAATTCCGACGTACGGACGTTTTAAGACAGCATATGATACGTCATGAGGAGGAAAAAGCATTTCATTGTACAAAATGTGATATAAGATTTAAGGGTTACGCTGAATATATAAAACACATGAATACACATAAAGACCAGGAGGGCTACGATTGTAATCTTTGTGGTGCCCATTTGGCCTCAACCTCATCCTTGAAAAGCCATCAACTTGTACATTCTGGCGAAAAACCTTTTAAATGTCAATATTGTGAAAAAAGCTTCAAAACTCTAAGAAATACGAAACGTCATCAAGAAACCCACAAAGGCGATAAACCATATAAATGTCTTCATTGTTTCACAAAATTTCAAAAAAGCAATGATCTGAAAGAGCATAAAAAACTTGTTCATAAGGAAGAAATTTGTGAACTTAATGAGGAATCCACAACAGATTCCTTAATAGAAGAAGGAAAGGGATCTATGGGCACAATGTTAAAGGATGAAAACGATGAAGACAATTTAAATATAAAATTAGAAAATAATGGAGCTCAACAATCACAAGCTTGTAACGATTTTAATAAAGGACAAAAAAATAAAAATATAACGTTAACGGAATCTAATCAATGTGATATCTGCAAACACGTATTTAAAAATCCCCAAGGTTTAGCCGTTCATAGGTCTTTACATTTTAAAAAGTATTTGTACCATTGCGATAAATGCGATAAAGGTTTTAATGAAGAGGAATTCTACATTAAACACCGTAATCGTCATTTAGGCATAAAAGCCTTTAAGTGTAATCAATGTGACAAAGCCTTTGAAGCAAATAGTATTCTTAATCAACATTTAATCTCTCATTCTACATTAACACCACATCTATGTACAGTTTGTGGCAAAAGTTTTCGTCGTATTGATGGTTTAAGACAGCATATGCGGCGTCATGGTGATGAAAAACCATTCCAATGTTCGGTATGCTCAAAAAGCTTTAAGTGTCTTTCGGATAAACTAAAACATATGATTAAGCATGGTGATAAAAAACGCTATGAGTGTCATATTTGTACTACACGTTTAGCCTCCTCAGAATCTTTGTCTCAGCATCTAATGACTCATACGGGTGAGAGACCTTATAAATGTGGATTTTGTGAAAAGAGCTTTATTTCCTTGTCTAATATGAGGTGCCACGAGAGAATTCATACTGGAGAAAAACCCTATAAATGTGATTACTGTTGGAAAACTTTTCGTCAAAGTAATGATTGTAAAAAGCATATGAGACGAATGCATAAAACTGAAATGTCTAATGCAAAACCTGAACAAATTAAAGAACTTATAGAAGAGAAATAA
Protein Sequence
MDSEICLTCLDKPKKSHKLDEILLENLKILELLYQLVPLLLEQPEFLLPDRICAKCVEKLIISYKFQKQCLDSVQSWHKISTKESFRKMTQPKFKIEEVEMENEYQSNEEENSIDSVVSIKQDFQISFQDMTLDSLAINKEELPLEQIVNNSLVEDDPILEKQVESVTNLNKSKGMHEHVPESNANKLNEELENQESCNKILPENYQFEDAIDSSNDSNQCYICKKKFKQPQGLACHMTKAHFKTYLYQCEKCEKGFDVHELYIRHCNIHLGIKPFPCPQCDKAFDYKNTLRLHLFSHSTETFSCAICDKKFRRTDVLRQHMIRHEEEKAFHCTKCDIRFKGYAEYIKHMNTHKDQEGYDCNLCGAHLASTSSLKSHQLVHSGEKPFKCQYCEKSFKTLRNTKRHQETHKGDKPYKCLHCFTKFQKSNDLKEHKKLVHKEEICELNEESTTDSLIEEGKGSMGTMLKDENDEDNLNIKLENNGAQQSQACNDFNKGQKNKNITLTESNQCDICKHVFKNPQGLAVHRSLHFKKYLYHCDKCDKGFNEEEFYIKHRNRHLGIKAFKCNQCDKAFEANSILNQHLISHSTLTPHLCTVCGKSFRRIDGLRQHMRRHGDEKPFQCSVCSKSFKCLSDKLKHMIKHGDKKRYECHICTTRLASSESLSQHLMTHTGERPYKCGFCEKSFISLSNMRCHERIHTGEKPYKCDYCWKTFRQSNDCKKHMRRMHKTEMSNAKPEQIKELIEEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01237897; iTF_01236975;
90% Identity
-
80% Identity
-