Pgri022759.1
Basic Information
- Insect
- Pollenia griseotomentosa
- Gene Symbol
- Lrrfip2_1
- Assembly
- GCA_963931875.1
- Location
- OZ007561.1:140447193-140447870[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-05 0.26 12.3 0.4 20 35 1 16 1 21 0.91 2 2 1.8e-49 3.8e-45 156.3 13.6 100 244 28 165 26 165 0.98
Sequence Information
- Coding Sequence
- ATGCGTGAATTGGAACGTCAGCAAAAAGAACAAGAATCCAAGGCAAACGTGTATTCGATATGCCTTAAACTGTTTCTGAAGAGGAATACTATGATAGCGAATACTCAGTTGGATAATGATCGTGCCTCACAAACGTATCAAATACAGTTGCTTAAAGACAAACTGGAAGATATGGACGAATCATATTCACAATTACAACGTGAGTGTAATGAAAAGACATGCGATTGTAATGCCTTAAAGCGATCGTTGGATAAATTAAGCGAAGAACTTAAACTAGTACAGGGTCAGCTGAATGAGCGTGATACGCTGATAGCAGAACAGGGTTTAGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATACCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAATTATTGGGTTCGGTACAAGAATCATTATATGTTCGACTTACAAAATTTAGCGAAGAGAAACAACAACTGCAGTCTGAAGTCCAGCAGTTGCAGGAATAG
- Protein Sequence
- MRELERQQKEQESKANVYSICLKLFLKRNTMIANTQLDNDRASQTYQIQLLKDKLEDMDESYSQLQRECNEKTCDCNALKRSLDKLSEELKLVQGQLNERDTLIAEQGLVIVAIENEDGTDTKRALVSVENAQLLGSVQESLYVRLTKFSEEKQQLQSEVQQLQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -