Basic Information

Insect: Pollenia amentaria
Gene Symbol: -
Assembly: GCA_943735935.1
Location: CALSEV010000199.1:146776-163264[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00082 0.093 14.5 1.1 1 23 116 138 116 138 0.98

2 15 6.7 7.7e+02 2.1 4.2 1 23 144 167 144 167 0.94

3 15 3.5e-06 0.0004 21.9 0.7 2 23 377 398 376 398 0.97

4 15 0.046 5.3 8.9 1.4 1 23 449 472 449 472 0.96

5 15 4.8 5.5e+02 2.6 2.8 2 23 532 553 531 553 0.93

6 15 0.011 1.2 10.9 1.9 2 23 730 751 729 751 0.96

7 15 0.85 96 5.0 3.5 1 23 757 780 757 780 0.96

8 15 0.58 66 5.5 0.2 2 23 815 837 814 837 0.95

9 15 0.0052 0.59 11.9 2.9 1 23 845 868 845 868 0.96

10 15 0.38 44 6.0 2.2 1 21 1009 1029 1009 1030 0.94

11 15 0.027 3.1 9.7 8.5 1 23 1047 1069 1047 1069 0.98

12 15 0.00018 0.02 16.5 0.3 1 23 1074 1096 1074 1096 0.94

13 15 0.0031 0.35 12.6 7.9 1 23 1102 1125 1102 1125 0.94

14 15 0.011 1.3 10.9 0.7 2 20 1131 1151 1130 1154 0.87

15 15 0.48 55 5.7 4.3 1 19 1160 1178 1160 1183 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00082	0.093	14.5	1.1	1	23	116	138	116	138	0.98
2	15	6.7	7.7e+02	2.1	4.2	1	23	144	167	144	167	0.94
3	15	3.5e-06	0.0004	21.9	0.7	2	23	377	398	376	398	0.97
4	15	0.046	5.3	8.9	1.4	1	23	449	472	449	472	0.96
5	15	4.8	5.5e+02	2.6	2.8	2	23	532	553	531	553	0.93
6	15	0.011	1.2	10.9	1.9	2	23	730	751	729	751	0.96
7	15	0.85	96	5.0	3.5	1	23	757	780	757	780	0.96
8	15	0.58	66	5.5	0.2	2	23	815	837	814	837	0.95
9	15	0.0052	0.59	11.9	2.9	1	23	845	868	845	868	0.96
10	15	0.38	44	6.0	2.2	1	21	1009	1029	1009	1030	0.94
11	15	0.027	3.1	9.7	8.5	1	23	1047	1069	1047	1069	0.98
12	15	0.00018	0.02	16.5	0.3	1	23	1074	1096	1074	1096	0.94
13	15	0.0031	0.35	12.6	7.9	1	23	1102	1125	1102	1125	0.94
14	15	0.011	1.3	10.9	0.7	2	20	1131	1151	1130	1154	0.87
15	15	0.48	55	5.7	4.3	1	19	1160	1178	1160	1183	0.92

Sequence Information

Coding Sequence: ATGTGCGACAAGGAATACGCCATGGTGTGCCGGACATGTCTGCAATCAAATGTGGAAATGCTACATTTAAGCGCGTTTATTAATGATAACTTGCAAGAAGATACAACAATGATTTCCTACATGGAATGTTTAAAAATGTGTATACAAGTGGAGGAAACTATGGATATTGGAATGCCACAAAAAATTTGTTTCAAATGTGCCTCTGCTTTGCAAGTGTCATATTGGTTTATGAAAAATGCCAGCCAAGCCCAGGATATGTTAAAACAGAAACTAACAGACATTAGAAGAAAAAAAGAACAAATAGAAAAGGAGACTGCAGCAGGAGAAGTTAAAAAGCCTAAAAGGTTTCGTTGCAAAATTTGCAATGTAAAAGTAGAAACAAAGAGAAATCTTAAAGATCATGTTAAACTTCATTTGGATATTATTGTATATAGTTGCCAATTATGTTCCTTTGAAAGTCATAATCGAAATAACTTATGTGATCATTACATACAAATCCATGACGTGGAAGCTACAAAGGAACAACTAAAACCAAAAACTAAAATATCATCATCATCTATTATTACCACCCACGACCTGTTAGATGGTGCCATAAAAAACGAACATTTTCAACTATTACCCGAAAATACGGAACATACTTTATTTGAAACTGTAACAAAGCCAACCCTCATAACAAATACGACAAGCAGTAGTGGGCCTTTTCAAGTATCCACGATAATTACAACTAATCCAAACTACTCCACATTATCTGCCCCTTTTACTGTATTGGAAGGTGAACTTAACAATGTCTCAAATAATGATCTTAGTATAGCTAATGAATTCATGGTCATGGCTGACGGCAGTTTAGAAAAAGTCTTGAACAAAGGTGTTGTTATAGAGTATATAGATGCGCCTAACAATGGCAACTTCACTTTAGATAATGGCTTATTTTTAGATAACATAATGCAGGTGCAAAATATGGACAATACCGTCATGTTGGAATCTGGAAATGACATCGCACAAATGGACGTTGATGATTTAATTATAGAAGATTCCGGCGATATTATAGAAGAAACTCAAGGCTCTATCATTCTTCCTCTTGAAGAGGAAACAATACCAGCCACTTTTATTGAACAGCCTAAAAAGATTATGTGTAAAATTTGCACCAAAGATTTTATAACACAGGAACAATTAAAAAATCATATGTTAACACATAATGAAATCCCTCACTTTTTTTGTGATCAATGTGCGTTTTATACGTTTTTCAAAATTGATCTACATCAACACTATAAAAGTAAACATAATCTGCAACCCACCATCAAACAATTACAACCAAAAAACAAAAAAAATTCTATTAATGAAATCTATACCTGTGATTTATGTTTCTATGAGGCAGAAACAAAGACAGATCTAAAAAAACATTATAAAGCAAAGCACAAAATTAAAACCAACGAAATACAGTTAAAGCCAACTAAGATAGAGAAAATAAAATCGAAATTATCACCGTTGTCGGCCAAGGCAAAAGCAGCCGCAATTCTAAGCAAACCAACAACATCTAGAATTACAAAAACGCAATCTGTGAACGATGCAAAGCCGGATTATCCTAATGGTTTGAACTGCCGTAAGTGCCATGAAGTATTCTATTGGCGTAATAAATTATATGAACATTATAAGTTGCATAATGCTGAAGAAGCCGCTCTTAAACAAGAGAAACAACTGATTAAAGTTCAAAATAAACCTTCATTTTCCACAAATCTGTATCAAAATAAAATTAAAACCACGAAAATCCTGCCAGCACAAACTCAGACAATTGCACAATCTCATATTGAAACAACAACAAACTCATCAAATTGTTCTACCTTGGACACGTTGGCCTTAAATGCCTCAACACCCAACATTACCACAACATTAAATTCTATGGCGCCTCTTACACCATCCTCCAGCTCCACTTATATCTTGCCATCGGATGCCATACCGCAAATTGTAGAAACCGATCAAACCATTGAAAATGTTATGGATTTCGATTTTAATTGTGATGATGATGCCTTGTTTGAAGACTTTGATGCCAATGTAGATGTAGAGAACGACTCCGATGATAATGATAGCGAATTTCGTAATGTTTTGCTTACGTCCGACGATGATTTTGAAGATATGATGCAGGAACAAAGTGGTAAGAATTCCGAGACCAACACAAACACATACGAATCGTATTGTGCCCATTGTCAAAAGGCATTCTTAAGCCAATATCAGTTTGAAAATCATATGTTTGTACATAGAGGTCTGGCTCCTTATCGTTGCGAATTGTGTACAAATCTATACAATAAAAAACGTTGTTTAATACGTCATTACAAAGCAGTACATAAAAATGTACCTACTCGTGATATGATTCAAGCTAAAGGCGACAAAGCCTGTGACGATAAAACTCCCTTAGAACTTTTAAAACTAGAAGAAACAACTTGTCTAATGTGTTCTAAATGTCCTTATGAATCTTCTGAATTAAATAACATAAGAGTTCATTTAAATTCTAGTCATAATATTTACGATGAACTTCCGTTTGAATGTCCGCGTTGTATACGTTCATTTGCAAATAAAACGAAACTTTGCAGACATTTAGAACGCAATCACAGTTTGACACCAATTAATCAGCATCAAATGCTTTTCGATAGTGCTGAGAATATATCAGCGGCAGTAGCAACAAGCACATCAGTAACGTTAATGACAACAACAGTAAATAATCATGTAAATATGATGAATACAGAAACTAGTGAAACAAACGCAAGTTGCGAATACAACGATATAATCAAAAAAGAACAACAACAACAATATACTTTTCCAGCCGCAACAGAACAGATACTATCATTTAAAGATGCCATAGCAACCGATATTAATATGACCCCATACGAAGTATCCTGCAGCCAAACAACATCTTTGGCTTATAATGAAACCTCTACTACCAGCAACAATTCCTCCCCCATCCAAATGGCTTCGAGCGCAGACTTAAATACATCAACCGCCCTAGATGCGAATAATTTTGATCAACCACTATTTAAATGTAAAATTTGCCTTTTAACTTGTTACGATCTCGCTTCATTTAATAAACATGGGAAGCGCATAGACTGCCGTAAACTTAGTGTTAGTAGTTTGGAGGACAGAATTCTATTCGAGTGTGAAATATGTCACTGTAATTATAAGACTATGTATTTGTTAAAACATCATCTAAAACGACACATAGGAAGAAAATTTTTGTGTGCTGAATGCCCCAAATCATTTATAAATAAGGTGGAATTGGAAGCCCACAAACATGTGCACAGTGGAGAGAGGCCGCATAAATGTAATGTGTGTACGAAGTCGTTTCGTTATATCCATCATTTGAAACGTCACAAGGACAGTGTGCATTTTGGTAAACGTCACGCCTGTACCGAACCCAATTGCAATCGTAAATTTACTACTCTGGCTCAACTAAAGGTGCATGTATGGACTCACAATGGTATTGTGCCATATAAGTGTCCCTTTTGTAACCGCTTATTTAAAAAGAGATTGCTTCTTCGAGAACATTGTTATAAAATTCATAAAATTAATTTGAGTGAAGAGGAAATGGCTGAAATATTTCGTAATGGTGTGGGCTATACAAATCCTCATGATTTTACTGTAACTATTGGCAATGGCAAAATGTTGCGACGTGGCGATTTAGAAACTATGGGTGCATCTGGAGTTATAAGATCTTCATTCAAATAG
Protein Sequence: MCDKEYAMVCRTCLQSNVEMLHLSAFINDNLQEDTTMISYMECLKMCIQVEETMDIGMPQKICFKCASALQVSYWFMKNASQAQDMLKQKLTDIRRKKEQIEKETAAGEVKKPKRFRCKICNVKVETKRNLKDHVKLHLDIIVYSCQLCSFESHNRNNLCDHYIQIHDVEATKEQLKPKTKISSSSIITTHDLLDGAIKNEHFQLLPENTEHTLFETVTKPTLITNTTSSSGPFQVSTIITTNPNYSTLSAPFTVLEGELNNVSNNDLSIANEFMVMADGSLEKVLNKGVVIEYIDAPNNGNFTLDNGLFLDNIMQVQNMDNTVMLESGNDIAQMDVDDLIIEDSGDIIEETQGSIILPLEEETIPATFIEQPKKIMCKICTKDFITQEQLKNHMLTHNEIPHFFCDQCAFYTFFKIDLHQHYKSKHNLQPTIKQLQPKNKKNSINEIYTCDLCFYEAETKTDLKKHYKAKHKIKTNEIQLKPTKIEKIKSKLSPLSAKAKAAAILSKPTTSRITKTQSVNDAKPDYPNGLNCRKCHEVFYWRNKLYEHYKLHNAEEAALKQEKQLIKVQNKPSFSTNLYQNKIKTTKILPAQTQTIAQSHIETTTNSSNCSTLDTLALNASTPNITTTLNSMAPLTPSSSSTYILPSDAIPQIVETDQTIENVMDFDFNCDDDALFEDFDANVDVENDSDDNDSEFRNVLLTSDDDFEDMMQEQSGKNSETNTNTYESYCAHCQKAFLSQYQFENHMFVHRGLAPYRCELCTNLYNKKRCLIRHYKAVHKNVPTRDMIQAKGDKACDDKTPLELLKLEETTCLMCSKCPYESSELNNIRVHLNSSHNIYDELPFECPRCIRSFANKTKLCRHLERNHSLTPINQHQMLFDSAENISAAVATSTSVTLMTTTVNNHVNMMNTETSETNASCEYNDIIKKEQQQQYTFPAATEQILSFKDAIATDINMTPYEVSCSQTTSLAYNETSTTSNNSSPIQMASSADLNTSTALDANNFDQPLFKCKICLLTCYDLASFNKHGKRIDCRKLSVSSLEDRILFECEICHCNYKTMYLLKHHLKRHIGRKFLCAECPKSFINKVELEAHKHVHSGERPHKCNVCTKSFRYIHHLKRHKDSVHFGKRHACTEPNCNRKFTTLAQLKVHVWTHNGIVPYKCPFCNRLFKKRLLLREHCYKIHKINLSEEEMAEIFRNGVGYTNPHDFTVTIGNGKMLRRGDLETMGASGVIRSSFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01237218;
90% Identity: iTF_01237218;
80% Identity: -