Basic Information

Insect: Pollenia amentaria
Gene Symbol: -
Assembly: GCA_943735935.1
Location: CALSEV010000191.1:20907-29277[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0042 0.47 12.2 0.5 1 23 358 381 358 381 0.95

2 12 9.2e-06 0.001 20.6 1.0 1 23 386 409 386 409 0.97

3 12 3e-05 0.0034 19.0 3.0 1 23 414 436 414 436 0.96

4 12 0.075 8.6 8.3 5.2 2 23 443 464 442 464 0.95

5 12 0.0033 0.38 12.5 2.6 2 23 472 494 472 494 0.95

6 12 0.015 1.7 10.5 2.1 1 23 500 523 500 523 0.95

7 12 0.0054 0.61 11.9 0.8 2 23 534 556 533 556 0.94

8 12 2.8e-07 3.2e-05 25.4 0.7 1 23 584 606 584 606 0.98

9 12 7.4e-06 0.00084 20.9 2.3 1 23 613 635 613 635 0.96

10 12 0.00025 0.028 16.1 0.2 3 23 643 663 642 663 0.97

11 12 0.012 1.4 10.8 1.2 1 23 670 692 670 692 0.98

12 12 0.0012 0.14 13.9 5.2 1 23 698 721 698 722 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0042	0.47	12.2	0.5	1	23	358	381	358	381	0.95
2	12	9.2e-06	0.001	20.6	1.0	1	23	386	409	386	409	0.97
3	12	3e-05	0.0034	19.0	3.0	1	23	414	436	414	436	0.96
4	12	0.075	8.6	8.3	5.2	2	23	443	464	442	464	0.95
5	12	0.0033	0.38	12.5	2.6	2	23	472	494	472	494	0.95
6	12	0.015	1.7	10.5	2.1	1	23	500	523	500	523	0.95
7	12	0.0054	0.61	11.9	0.8	2	23	534	556	533	556	0.94
8	12	2.8e-07	3.2e-05	25.4	0.7	1	23	584	606	584	606	0.98
9	12	7.4e-06	0.00084	20.9	2.3	1	23	613	635	613	635	0.96
10	12	0.00025	0.028	16.1	0.2	3	23	643	663	642	663	0.97
11	12	0.012	1.4	10.8	1.2	1	23	670	692	670	692	0.98
12	12	0.0012	0.14	13.9	5.2	1	23	698	721	698	722	0.97

Sequence Information

Coding Sequence: ATGGAAACTTGTCGTACTTGTGCCAAATGTGATTTTGATAATGAATGCCAATGGTTTGATTTATTTAATGCTCCTCGTTGGCAACTTGAAACTCAACGTATACATTTGGAGTTAAATACTTGGAAAATCAAGATTTCATGCAACGATGGCTTGCCACAAAAAATTTGCACCGATTGTTTTTCAAAGTTTTGCACAGTCTCCTCATTTCGTTTACAATGTTTAGAGGCACAAACAATATTAAGCAATATATTCGATAAAATCGATACTCAAAGTATACAAGATGATGAAGTTTTTGAGGGTTTTGCTAATGAAGAGGATAATGAAATAAAAAACAGCGTGAAAATTGCAGAAGCAGAAATAACACATGCAGCAGATAATGCAGCACAAATAGCTGTTCATTTAAAGGCAATTGAGCAAACATTAGAGACAACTACAGAAAAGAGCACAAATAACAGTAATAGTAGCAACAATAACCAAAACAACAATGAATATAAAACAACTTTTAGTGAAATCTTAAATCTTAATCCTAATACGAATACCGAGGTTTCATTTACAACTGTAACAAAATTACCACGCACTGCCGCTTTAGAAAACGAAAATAAAAACCAAGATATTGTTCACATCTTAGATCAGGCAGAAGATGAGCAAGTCGATGAAGATATTAATAACAACATCAGCAATAACATCGATGATGATTACGATGAAGTTGGCTCGACCAGTAATATAAACACTACTTTAAATAATAATAATTACGATGAAACATCAATACTAGAAGATACCAACGAGTTAGATGAAAATGACCTTATAGAAGAACTTATCGAAGAACTAGATATAATTGAGGAAATTGCCGAAGTAGCCGAAGTAGAATGTTGCCATGCTGACAACCAAACAAATGGGAATATCATCTTTTCCCCAACTAACGACAACGAAGAAGATCATTTCGCCGATAATTTAAATATAACATTTGAATGTAAATACTGTCACAAGTGGAAGAACAGTGCACCGGAAAATTTTCTTACCCAACAGGAACTCTTAGCCCACATTACCAAACTCCATAACTCCGAGCAACCCTACAATTGTCCTTATTGCAAGCAAATGTTTATGGATGCCGCTTCCAGGACCACGCACTTGAAGGATGATCACAGTCAAAAGGTTTACGAGTGTGTAACATGTGGTAAAAAATATGCCGATAAATTTAATTTGAAAAATCATATAGAAAAATATCACAGCGGAACCGATTTTGATTGTGCTCTATGTGATAAGAGTTTTTGTTCTAGTAAAAGTTTGAATTATCACATGAAGTGGCATAATCCCAAGGAGCAATTAAAATGTAGTTACTGTGATCGTTTGTTTATAAACCAGAGGCATCTGAAATGTCATGAGGAGACTCACACAGGATTTCGCAGTCAGGAGGTTTGTTCGTTTTGTGGGAAATATTTCTTTCATTTAAAAACTCTTAGATGGCATATTTACCGCCAACATGGTGGTGAGAAGCCATACAAATGTTCCAGATGTACGGAAGttttcacTTCCTACTTTGAAAAACGTTTACACATGCTTGAATATCATTTGGATAATCTCACGCTGATCGAAAAAACCGAGTGTATGCTTTGTCACAAACGCTACGATAACGAAATGGAACTCAAGGATCATATGTTGGAAGATCATAAAGAAAGTAAAGGAGCAGTTAAGATAGCAAATAATAAAAGAGTCATTATGAATAAAAAACCTAAAAGCTTTACGGGAATATTTCAATGTGAAAAATGTGATAAAAGATTTAATATGAAATCTGCTTTAGAGAGACACATGGCGGTGCATTCTACGGAGGGGAGACCCCATGCTTGCCCACAATGTCCTAAACGATTTAAACGTTCACAAGATATGAAGTGGCATTTAAAAACTCATTCCTCTGAGAAATCTAATATCTGCGACGTGTGTGGCAAAGGTTTTGCTTTGAAATATGTGTTGACTCAGCATCGCAGAAGTCATGAAGTTTTAGAAAAGAACTTTACCTGTTCCACCTGCGGCCGTTCTTACCTTTTTGAAAAGTCTTTACGTTTACACGAGCGCATACACAGCGGTAAAACTTATTATAAATGTGATTTGTGCAGTGAAAGTTTTGTAACCCATATTAAATTCAAATGGCATATGAAAAAAATGCACCATGAGGAAGAGGTGGCTGCTACAAATTGCAATCCTAATAATAAAAATAAAACTAACATTGAGCTGCCATTGGACAATTTGGTCAATATTGTGATTACTTAG
Protein Sequence: METCRTCAKCDFDNECQWFDLFNAPRWQLETQRIHLELNTWKIKISCNDGLPQKICTDCFSKFCTVSSFRLQCLEAQTILSNIFDKIDTQSIQDDEVFEGFANEEDNEIKNSVKIAEAEITHAADNAAQIAVHLKAIEQTLETTTEKSTNNSNSSNNNQNNNEYKTTFSEILNLNPNTNTEVSFTTVTKLPRTAALENENKNQDIVHILDQAEDEQVDEDINNNISNNIDDDYDEVGSTSNINTTLNNNNYDETSILEDTNELDENDLIEELIEELDIIEEIAEVAEVECCHADNQTNGNIIFSPTNDNEEDHFADNLNITFECKYCHKWKNSAPENFLTQQELLAHITKLHNSEQPYNCPYCKQMFMDAASRTTHLKDDHSQKVYECVTCGKKYADKFNLKNHIEKYHSGTDFDCALCDKSFCSSKSLNYHMKWHNPKEQLKCSYCDRLFINQRHLKCHEETHTGFRSQEVCSFCGKYFFHLKTLRWHIYRQHGGEKPYKCSRCTEVFTSYFEKRLHMLEYHLDNLTLIEKTECMLCHKRYDNEMELKDHMLEDHKESKGAVKIANNKRVIMNKKPKSFTGIFQCEKCDKRFNMKSALERHMAVHSTEGRPHACPQCPKRFKRSQDMKWHLKTHSSEKSNICDVCGKGFALKYVLTQHRRSHEVLEKNFTCSTCGRSYLFEKSLRLHERIHSGKTYYKCDLCSESFVTHIKFKWHMKKMHHEEEVAATNCNPNNKNKTNIELPLDNLVNIVIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00435833;
90% Identity: iTF_01237964;
80% Identity: -