Pame041662.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- MBD-R2
- Assembly
- GCA_943735935.1
- Location
- CALSEV010001501.1:436608-443194[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.5 4.4e+03 -1.4 0.0 43 71 91 178 60 182 0.64 2 3 2.2e-21 2e-17 63.8 0.1 4 76 421 491 418 492 0.93 3 3 1.9 1.7e+04 -3.3 0.0 45 63 929 945 927 950 0.77
Sequence Information
- Coding Sequence
- ATGGGTCGCCGGTGTTGTATAGCCGGGTGCAGTTCAACATCACGCTTACCGGAACATCATGGTGTTACTTACCATTCCTTTCCCTCCGATCAAAATGCACGCTCTGTTTGGATACGCAATACCAAAATAAGTGCTGATCGCCACCTTACGAAAAGTGTTTTGGTTTGTTCCAGACACTTTCGGCGCGCAGACTTCCAGCCACAGCGAAGTGGTAAATATATGCTAAAACAAAAAGTGTTTCCCACAGTATTTCCCTGGGGTAAAATAGATGCGGCCCAGATTGAGGAAGATTTGGAATTTTTAAATTCAACAGGCTCGGCAGCGCCAAGTAATTTGTTGACTACTTCCTCTACGGTAGATGAAGATACAAAAGCTACCGTGGCTGCCACGGTGGCACAGATAATGGCACAAACTGCTGAATTGAATGCAGCAGCTGGCATAAAAGTGGAAAAAGTTGATGGTGGTATGGATGAAACTTTAAATGATGCGGCTGCTGTTAATCCATCTACGCCTCCAAATTTTAAGTTTGAACCAGTGACTTCCTTTAATCCGGGAGCTCGTTTAGAGGCTCAGGACTTTGATGGCATTTGGCATACAGCACGTATTGTTGAAGTTGATAATGATGACCGTGAGGTACTCATTAAGTTCGAAAAGACTGGTAAAAATAAATCAAATATGGCTGGTACCGAAGAATGGATACCTATGAATTCTTCTCGCCTTAGACAACGTATTTCCACAAAACCCATATTAAATTTCGAATTGGAGGAGAAATGTTTAGCACGTTGGTCGGGTCCACGAAAATTTCCTGGCACAGTTAAGAAGATTTTACCCAATGATGTATATGAGATTTTATTCGATGATGGTTACGTGAAGAATGTTCGTGCTATTCATATGAATAAAATGCAGCCTATAGCTATGTTGGAACCAGAAGTTGTAGAGTGTGTGCCAGCTGAAGTTTCTGCTATGGTACCGGTTACTCCCGCTGACACCGTTGAAAATTCGTTGCCCTTGCCGGTAACCCCTACTACCATTTCTGTTAAAAGGCCTTCTTCTGGACAGAATTCTGGCTCTAACCCTAAAAAACGTGCTCCGAATGGACCAAGAAAGGATTGGCCTCTGCTGGATTTATCAAAATTGAATTTATCCTCCCTTAATCTTCCAGAAATTCCCAAAGATGGGGAATGGACTTGTCATTGGGTTAATGATCAGCCCATTGGTCGCGAAGGATATTTGGTTGTTGGGGAACATCGTAAACCCACAGTAATAGTAGAAGATTGGCGTTTACCTTCCGGATGGGTAAAGCATATGTATCAACGTTCCAATGTTTTGGGAAAATGGGACGTTATATTAGTCACACCAAATGGCAAACGTTTTAGATCGAAAGCTGATCTAAAAACTTACTTGGAGGAACTGGGTCAAGTATATAATCCTGACATTTATGACTTTAGCATCCACCGCCGAAGAGCCAAAGATATCAATTGTTATGTTTACACATCCGACTATGTGCCCCAACAGCCAGTAAAATCAAAGTCTTCACTAAATACTTCTCTTGATACTAGCTTAGAAACTAAACCTTCAGATTTAGCGGGAACAATAGCGGCTGTCTCGTCTCCTTATATTGATACTCCTATCGCTGAAGCTCTGCCACCCATAGAGTTGTTAACAACTTCCTCGAGTAGCTTAGCTGCTGAAGATAAAAGTGTGACCCAGGTAGAGGCAGAAGTACCAAAACAGTTGTTAGAATCGGCCGAAGTTAGTTCGACACCAACGCCTACATCTACGCCTACAGTAGGTTTTAAAGAAGAGGCTGCCGTTTCATCAGATTGTGCAACGCCTACACCTATTTTAGCAGCAGGAGCAACAACATCGGATATTCCAACTGCTGAAATATCGCAAAAAGTTGAGGACGGTTACGCTCTTATTGGCGGCCTAAAAGTGCAAATCATAGATAATCTATTTCGTTGTCCCCAGGAGGGCTGCTTAAAGAATTTCCGCAAAGAAAATCATTTGCAAATTCACGTTAAGCATTATCATCGCAATTTAATAAAATTACTTGGTTCTTGCCCTAAAATGTTGGAATTGGCCGAAAAACGCACCCATCCTGTTGACAATGATGCCGCAGAACCAGTGCCTAAAAATCAAATACCCAATCAACAGTTTTTTGCTAAATTGCATCAGCAAGATTTAGAACAAACTAGAGCTCATCGCAGAAGTACTGGAGCTCTAAAGAGTTTAATGGAATTACCGCCTACAGAAATTAAAACAGAACATTTGGACGAATCTTCCATTAAAGTAGAGGAACAAAATATGGATACCTCACAAAATGATACTTCTGTAAATAATAACACTACAGTTTCTAGCGCTCTTTTGGAGAGTTCTTTTGCTTCAACAAGTGCAGCAGATGAGTCAGTGGTTGCTGAAACATCAGGAGCTGAGCCACCGGCCAATAAAAGATCTAGATTTTCAACCAGTAAAAGATCATCTGGCTCACGCAAAAGTAATCGACAAAGAACTACTAGGAAATATCTTACGGCAGCTCAGGCTACTGCAGGTGTGGTAGGATCCGTCATCCCTTTACCAATAGCACCTGATACTAGTTTCAGTGGCGTGGCAGAATTTGAGGAGACTCGCCATTCTTTTAATGCTACACCGGAAATCAATAAAGATGCCAAGAAACGTAAAATCGTGCTGCCCTCTAATACCCCTCTTAGTAGCGTTGATTCTCCCATAACAGCCGACTCCGGCTCAAACTCGTTTCAACTTCAAAATCCCACGGACATCGATATAATTAATCAACCTCCCCAATACATCAAGGAAAATGGTGAATTAATAAAAATTGTACACATGCGTCAAGAAGAAATCATTAATTGTTTGTGTGGCTACTGTGAGGAAGATGGCCTTATGTTACAATGTGAACTTTGTTTGTGTTGGCAGCATGGCCTCTGCAATGGCATTGATAAGGTCCTGCAGGTCCCTGATAAATACGTCTGTTATATATGTCGTAATCCCCAAAGAGCTCGCGAGTCTGTACGATTTAAACATGACCAAGATTGGCTGTATGAAGGCAAATTACCCGTGGCTAACTACCATGCTTCCAATTCTTCTCAGCTAAACAAAAGAGCCGAGTACCTTAAACGTTCCCATATTTTAACTGGCAATCTTTTGGAGTTGAAAAACTATATGCATTCGCTAAGAGTTAAAATTAATATAGCCAACAATAAATGTCATCCAAAACTTTATTTATGGGCAAAGAAATGGGATGAAGATGTGCCAGCAGTAAAAAATGAAATTAAATATGAAACCGAGGAAGACAAAACAAACAATGCTAGTATGCCTGTAACACCCACAAAGAAAATCAAATCCGAACCTACAACCCCGGCCCGTCTAGTGCCAAATATACCTCAACCTGAGGCGCCCATAGATCCAATTGAATGCCAGCAGCGTTTAATGGAACACATTAAGATACAGCAGGAATTAGTTTTGGGACGTTTAGGTTATATAGAAGCGGCCATAGATGTTTTGGAAAGTGAAGATGATTTGCCAGATTTGCGTGAGGACGATTTAGGTGCCACCAAGGATGCTTTAGCCGCCTTTATTAAAGAATTGGACACTGTTAAACTAATTGCCAAGCTAAATAGTTTGGAACATACTAAACTGGCGTACAAAAATCCCATAACTCCAGTTAAATAG
- Protein Sequence
- MGRRCCIAGCSSTSRLPEHHGVTYHSFPSDQNARSVWIRNTKISADRHLTKSVLVCSRHFRRADFQPQRSGKYMLKQKVFPTVFPWGKIDAAQIEEDLEFLNSTGSAAPSNLLTTSSTVDEDTKATVAATVAQIMAQTAELNAAAGIKVEKVDGGMDETLNDAAAVNPSTPPNFKFEPVTSFNPGARLEAQDFDGIWHTARIVEVDNDDREVLIKFEKTGKNKSNMAGTEEWIPMNSSRLRQRISTKPILNFELEEKCLARWSGPRKFPGTVKKILPNDVYEILFDDGYVKNVRAIHMNKMQPIAMLEPEVVECVPAEVSAMVPVTPADTVENSLPLPVTPTTISVKRPSSGQNSGSNPKKRAPNGPRKDWPLLDLSKLNLSSLNLPEIPKDGEWTCHWVNDQPIGREGYLVVGEHRKPTVIVEDWRLPSGWVKHMYQRSNVLGKWDVILVTPNGKRFRSKADLKTYLEELGQVYNPDIYDFSIHRRRAKDINCYVYTSDYVPQQPVKSKSSLNTSLDTSLETKPSDLAGTIAAVSSPYIDTPIAEALPPIELLTTSSSSLAAEDKSVTQVEAEVPKQLLESAEVSSTPTPTSTPTVGFKEEAAVSSDCATPTPILAAGATTSDIPTAEISQKVEDGYALIGGLKVQIIDNLFRCPQEGCLKNFRKENHLQIHVKHYHRNLIKLLGSCPKMLELAEKRTHPVDNDAAEPVPKNQIPNQQFFAKLHQQDLEQTRAHRRSTGALKSLMELPPTEIKTEHLDESSIKVEEQNMDTSQNDTSVNNNTTVSSALLESSFASTSAADESVVAETSGAEPPANKRSRFSTSKRSSGSRKSNRQRTTRKYLTAAQATAGVVGSVIPLPIAPDTSFSGVAEFEETRHSFNATPEINKDAKKRKIVLPSNTPLSSVDSPITADSGSNSFQLQNPTDIDIINQPPQYIKENGELIKIVHMRQEEIINCLCGYCEEDGLMLQCELCLCWQHGLCNGIDKVLQVPDKYVCYICRNPQRARESVRFKHDQDWLYEGKLPVANYHASNSSQLNKRAEYLKRSHILTGNLLELKNYMHSLRVKINIANNKCHPKLYLWAKKWDEDVPAVKNEIKYETEEDKTNNASMPVTPTKKIKSEPTTPARLVPNIPQPEAPIDPIECQQRLMEHIKIQQELVLGRLGYIEAAIDVLESEDDLPDLREDDLGATKDALAAFIKELDTVKLIAKLNSLEHTKLAYKNPITPVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01174299;
- 90% Identity
- iTF_01235775;
- 80% Identity
- iTF_01235775;