Basic Information

Insect: Polistes metricus
Gene Symbol: -
Assembly: GCA_010416925.1
Location: QUOH01000036.1:69867-73658[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.012 0.86 9.9 0.1 2 23 160 182 159 182 0.93

2 13 0.0099 0.68 10.2 4.6 2 23 318 340 318 340 0.91

3 13 0.00022 0.015 15.4 0.9 2 23 401 423 400 423 0.95

4 13 5.6 3.8e+02 1.5 7.6 3 23 508 529 507 529 0.95

5 13 0.71 49 4.3 1.2 1 23 578 601 578 601 0.93

6 13 1.6e-05 0.0011 18.9 0.6 2 23 655 677 654 677 0.96

7 13 0.0022 0.15 12.3 0.2 3 23 702 723 701 723 0.91

8 13 0.025 1.7 8.9 3.5 2 23 774 796 773 796 0.96

9 13 0.091 6.2 7.2 4.0 3 23 811 832 809 832 0.92

10 13 0.001 0.069 13.3 0.4 2 23 879 901 879 901 0.94

11 13 0.038 2.6 8.3 1.5 1 23 995 1017 995 1017 0.98

12 13 0.00028 0.019 15.1 2.6 2 23 1033 1055 1032 1055 0.96

13 13 0.041 2.8 8.2 0.7 1 23 1143 1166 1143 1166 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.012	0.86	9.9	0.1	2	23	160	182	159	182	0.93
2	13	0.0099	0.68	10.2	4.6	2	23	318	340	318	340	0.91
3	13	0.00022	0.015	15.4	0.9	2	23	401	423	400	423	0.95
4	13	5.6	3.8e+02	1.5	7.6	3	23	508	529	507	529	0.95
5	13	0.71	49	4.3	1.2	1	23	578	601	578	601	0.93
6	13	1.6e-05	0.0011	18.9	0.6	2	23	655	677	654	677	0.96
7	13	0.0022	0.15	12.3	0.2	3	23	702	723	701	723	0.91
8	13	0.025	1.7	8.9	3.5	2	23	774	796	773	796	0.96
9	13	0.091	6.2	7.2	4.0	3	23	811	832	809	832	0.92
10	13	0.001	0.069	13.3	0.4	2	23	879	901	879	901	0.94
11	13	0.038	2.6	8.3	1.5	1	23	995	1017	995	1017	0.98
12	13	0.00028	0.019	15.1	2.6	2	23	1033	1055	1032	1055	0.96
13	13	0.041	2.8	8.2	0.7	1	23	1143	1166	1143	1166	0.97

Sequence Information

Coding Sequence: ATGTCGTCTAGCATGGCACAGgagacgacaacgacgatatCGGATCTCACCGAGGTAGACAGCGACGGCGGAGGTTCCAGTTCGAATGAACGAGATTTGAGGAAGAAGGGTCTTCGTCTTCACGGAGACGCTGATTTCGCTGGGCCGAAGAAGAGACGAAAGCAAACGACACCGGTAAGATTTTCCTCGTCCTTGATGAGCGGTCTGCAAGATGAATCGAACGAGGATGATgacgaggaggaggtggaggaggagggagaacTCGAGGGGGAAGTAGAAGGAAGGGAGGTGGTAGAGGAGGATGACGATGATAGGGAGGGGGGCATCGAGGAGGGAGAGGTTCACGTTGACGCCGAAAATAAACTGTCGGTTAGATCGTTGAACGATCATCATCACCaccttcttcatcatcatcatcatcatcaccatcatcatcatcatccctCGATGGAAGATGAAAATCTTGATAATGATATTCGTTGTCAATATTGCGGCATGTTTCTCGAGAACAGAGAAATGTTGAACGTACATTTGGACAACGAACACGGTTCTGGGAGCAATCAAACGAGTGTTATGTTACAACATAGGTCGCCTGTTATTAAATTAGAACCTCCTTCTAATCTATCGGACAGTCCCGTCAATCTTTTGAGCGTTAAAACTTTTCCATCTTCTTGGATAAaccaacaacagcaacaacagcaacaacagcaacaacaacaacaacaacatagCGTGCAATCGCAAACGCAGATGCAATCGCAAAGCGAGGAACCTTGGCCAGGACCGTCGAATCAATTGACAATGGGTAATCATCATTTGCAAGCATTATCGGGATTTCCAGGTGCCCTGGCATCGTACCTTCCTCTGTCAACATTTCCATTGACCGATCCCACGCATATTCCAAGAACGTCGATAGCTCCTGCCCCGGTTAGGATCTTCAATCCCGAGGCTTATTGCGATCTGTGTAACAAAGAATTTTGTAATAAGTATTTCTTAAAAACGCACAAGGCTAACAAGCACGGTATTTACGTGGATTCACCTGGACCGAATCCGAATGAAAGTGCCAACAATGTTCCTACGCAATTATTTCAAaccggtggtggtggtggtggtggtggtgctggtgttggtgctggtggtggatATTCAAGCAACACAATTAAATTGGAACCACCTGCCACTCCGCCGATGCCAAGCGTACCGTGCGAAATTTGtcaaaaacgttttaaaaacgAGGAATCCGTTAGGAAGCACAAACAAAAGATGCACAACAACGAATCGATCGAACATACCGATCAATCTTTACCTGCTTCTCAAAGCGAAGACGACAGGGAGACACCGCGTAGCAGTCCTGGTGGTATCGAGACACTTTTCAAACAAGACTTCGGCATGGAACAAGAAGAAACGACGTTCATGCCAGCACCGAGACACCTGTCCCCCCAATCGATCCAACAGGCACGCGATTCTGGATTCAACGCCgatcgtcttcgtcgtctggGTGTCATCAATCCCGACGCTTTCTGCGAAATATGTTGCAAGGAATATTGCAACAAGTATTTCTTGCGTACCCACAAAATGAAACGACACGGTATCGTTATACAAGACAACGAAAAGTCACCCAGCAATCCGGCGGCAGCCTTGACCTGGCACCAGGTACAAACTAGCCCATTGAATTTAATCGTAACCGAATCTGGAAACGGATCCGAATCCAACGATCGTACGAACGACGATTACGAGTGCAAACCTTGCGGAATACGATTCCAAACTATCGGACTTTATCAAGCTCATTGCAGGAAGATGCACGAGAACAACGGCGAAGAACACTCGCCCAGGCAAGAATTCGATCAGGACACGTCGCAGGATCAACGCACGGATTCCATTTCCGAGGATCTTCAAAAACTTCAAACGATGATCCTACAATTGAATGGTTTGGATCAATCGGTTATCGGTAAGGTGTTACAATCCTGTAACATTTGTGGAAAAGAATGCGAGTCGAGATCCGCATTAAGAATTCACATGGCTACCGAACACGGTAACGTGTCGGATAATCCGCTTTCACCTGGTCAAGAAAAATCACCGAGTAGTACGAACGTAACAGCATTTTGTACCTTGTGCGAGAAGGATTATGTTAATCAGGAAGCTTTGAAAAAGCATATCGTCGAGGAACATCAAGCTAATCTGCCAAATCCTTTGTTACAAGTACCTACTACTACGAGTTCTAGTTCGATGATTAATTCGACGACCAATCTGACGACACCCAATAGTAACAATCAAACGCAATCGGAGAAAAAGATCGCGTCTATGACACCTACTTCGAGTTACTGCGTCATTTGTAATAAAGAATTGTGTAACAAGTATTTTATGAAAACGCATATGCAAAAGATGCACGGAATTCAGATAGAAAACGGCGCGCAAATAGGTGGCGTAATATGTAACATTTGTAACAAGGAATTGTGcagtaaatatttcttaagagTACACAAACACAACAGTCATGGAATAGTCAACGAAAATACTTCATCTTCCTCCTCGGCCAAACAGGAATCGTTCGATGCGTCCAGTTCCGAGGATGCTGCATTGAAACCGGAACAATTGGGTGATCTGAGTCATcgttattttacatattttaccGAGGTTTGTCCGTTTTGCAGTAGAAGGTTTCGCAGTATCAAATGGCTGAAAGCGCATCTTTTGAACGATCATGGAAAAAATGGTATCGACAAATGGCGCGAGATGGAACAACAAAATCAAACGTCAACGTCAACGAAAAGCAACAATCGGTCGGCTGGTGCTTCTGCTTctactgctgctgttgctgctgctactaATTCGTCGAAATCAAGCGCACAATTGTCCAATTTGAAAATACCAAATGGTTTTGAATTGACTCAACAAAACAAACCGACCGATTTAACCGGTTTGGGAAATCAAGTATTGTCGAATTTATTGGGCTCTTCTTCGGACGATCAACAATTGAAAAGTTATCGTTGTTCCTATTGCAATTTTTCCACGACCGTATtgccatttttatttctacacgAAAGATCTCACGTTAATCCGCAGGAAAATATCGAGACCGAGAGTAACAATACCCTTCAATGTCCTATATGTTCGCAAAGATTTCATCAGCCCGAACAATTGCATCAACATTTGTTAACGAGACATCAATTTTCGGCATTGCTGACGCAATTTCAAACACCTCCTCCGATACTTCAAACACCTAACGTTGATCAAGAAAAGCTTGGTATACATTTAGAACCGAAAAATAATACCAAATTGGAAGAAACTAAAGAGGACAGTAGTGTGATCAATCAAACGCAAATCAATCAACCAACAATCCAAATCCAATCGGAACAACAACAAGTGAGAAATAATCTGAAAGTTCAAGAGGACAACAACCCGGTCCAAGTGACCCCGCACGGAACATTCAAATGCGCTCAGTGCGGTTATGCAACGACCAATGTAAACAGGATTAGAAGGCACGTTAAAAAGGATCACACGGCTATCGGTGATCCAACTGACAGCGTAATAGCTGAACTTAGTAAAACCTTAAAGGATATTGCCAACAGACACAAAGTACCAGCTTGTTATGCAATGCCTCAAGATGCTAATGTAAATATTGAGAAAACTATAATGCAACCATTCCTGATCGATGAACAACAGGATCCGTCATCGGTTAACAGTGACGATTCCAATTCGGAAAAACGATTTACACCGGCTCTCGTTTATTTACCTGTTAAATCGCGAATTAGCAGTGCGCTAACCGCATCCTTCACTCTGACGCCtgcttaa
Protein Sequence: MSSSMAQETTTTISDLTEVDSDGGGSSSNERDLRKKGLRLHGDADFAGPKKRRKQTTPVRFSSSLMSGLQDESNEDDDEEEVEEEGELEGEVEGREVVEEDDDDREGGIEEGEVHVDAENKLSVRSLNDHHHHLLHHHHHHHHHHHHPSMEDENLDNDIRCQYCGMFLENREMLNVHLDNEHGSGSNQTSVMLQHRSPVIKLEPPSNLSDSPVNLLSVKTFPSSWINQQQQQQQQQQQQQQQHSVQSQTQMQSQSEEPWPGPSNQLTMGNHHLQALSGFPGALASYLPLSTFPLTDPTHIPRTSIAPAPVRIFNPEAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGPNPNESANNVPTQLFQTGGGGGGGGAGVGAGGGYSSNTIKLEPPATPPMPSVPCEICQKRFKNEESVRKHKQKMHNNESIEHTDQSLPASQSEDDRETPRSSPGGIETLFKQDFGMEQEETTFMPAPRHLSPQSIQQARDSGFNADRLRRLGVINPDAFCEICCKEYCNKYFLRTHKMKRHGIVIQDNEKSPSNPAAALTWHQVQTSPLNLIVTESGNGSESNDRTNDDYECKPCGIRFQTIGLYQAHCRKMHENNGEEHSPRQEFDQDTSQDQRTDSISEDLQKLQTMILQLNGLDQSVIGKVLQSCNICGKECESRSALRIHMATEHGNVSDNPLSPGQEKSPSSTNVTAFCTLCEKDYVNQEALKKHIVEEHQANLPNPLLQVPTTTSSSSMINSTTNLTTPNSNNQTQSEKKIASMTPTSSYCVICNKELCNKYFMKTHMQKMHGIQIENGAQIGGVICNICNKELCSKYFLRVHKHNSHGIVNENTSSSSSAKQESFDASSSEDAALKPEQLGDLSHRYFTYFTEVCPFCSRRFRSIKWLKAHLLNDHGKNGIDKWREMEQQNQTSTSTKSNNRSAGASASTAAVAAATNSSKSSAQLSNLKIPNGFELTQQNKPTDLTGLGNQVLSNLLGSSSDDQQLKSYRCSYCNFSTTVLPFLFLHERSHVNPQENIETESNNTLQCPICSQRFHQPEQLHQHLLTRHQFSALLTQFQTPPPILQTPNVDQEKLGIHLEPKNNTKLEETKEDSSVINQTQINQPTIQIQSEQQQVRNNLKVQEDNNPVQVTPHGTFKCAQCGYATTNVNRIRRHVKKDHTAIGDPTDSVIAELSKTLKDIANRHKVPACYAMPQDANVNIEKTIMQPFLIDEQQDPSSVNSDDSNSEKRFTPALVYLPVKSRISSALTASFTLTPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01233944;
90% Identity: iTF_01232599;
80% Identity: -