Basic Information

Insect: Polistes canadensis
Gene Symbol: -
Assembly: GCA_001313835.1
Location: NW:183455-193917[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0063 0.39 10.4 0.1 2 23 120 142 119 142 0.94

2 13 0.0069 0.43 10.2 4.6 2 23 277 299 277 299 0.91

3 13 0.00015 0.0096 15.4 0.9 2 23 364 386 363 386 0.95

4 13 3.9 2.4e+02 1.6 7.6 3 23 471 492 470 492 0.95

5 13 0.5 31 4.4 1.2 1 23 541 564 541 564 0.93

6 13 1.1e-05 0.00071 19.0 0.6 2 23 618 640 617 640 0.96

7 13 0.0015 0.094 12.3 0.2 3 23 665 686 664 686 0.91

8 13 0.018 1.1 9.0 3.5 2 23 737 759 736 759 0.96

9 13 0.063 3.9 7.2 4.0 3 23 774 795 772 795 0.92

10 13 0.0007 0.044 13.4 0.4 2 23 842 864 842 864 0.94

11 13 0.027 1.7 8.4 1.5 1 23 955 977 955 977 0.98

12 13 0.00019 0.012 15.1 2.6 2 23 992 1014 991 1014 0.96

13 13 0.029 1.8 8.3 0.7 1 23 1099 1122 1099 1122 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0063	0.39	10.4	0.1	2	23	120	142	119	142	0.94
2	13	0.0069	0.43	10.2	4.6	2	23	277	299	277	299	0.91
3	13	0.00015	0.0096	15.4	0.9	2	23	364	386	363	386	0.95
4	13	3.9	2.4e+02	1.6	7.6	3	23	471	492	470	492	0.95
5	13	0.5	31	4.4	1.2	1	23	541	564	541	564	0.93
6	13	1.1e-05	0.00071	19.0	0.6	2	23	618	640	617	640	0.96
7	13	0.0015	0.094	12.3	0.2	3	23	665	686	664	686	0.91
8	13	0.018	1.1	9.0	3.5	2	23	737	759	736	759	0.96
9	13	0.063	3.9	7.2	4.0	3	23	774	795	772	795	0.92
10	13	0.0007	0.044	13.4	0.4	2	23	842	864	842	864	0.94
11	13	0.027	1.7	8.4	1.5	1	23	955	977	955	977	0.98
12	13	0.00019	0.012	15.1	2.6	2	23	992	1014	991	1014	0.96
13	13	0.029	1.8	8.3	0.7	1	23	1099	1122	1099	1122	0.97

Sequence Information

Coding Sequence: ATGATGTCGTCTAGCATGGCACAGgagacgacaacgacgacgactacgacgactacgacgacgatatCGGATCTCACTGAGGTAGACAGCGACGGCGGAGGTTCCAGTTCGAATGAACGAGATTTGAGGAAGAAGGGTCTTCGTCTTCACGGAGACGCTGATTTAGCTGGACCGAAGAAGAGACGAAAGCAAACGACACCGGTAAGATTTTCCTCGTCCTTGATGAGCGGTCTCCAAGACGAATCTAACGAGGATGATgacgaggaggaggtggaggaggagggagaaCTCGTGGGGGAAGTAGAAAatcatcatcatcattcctCGATGGAAGATGATAATCTTCAGAGTGATATTCGTTGTCAATATTGCGGTATGTTTCTCGAGAACAGAGAAATGTTGAACGTACATTTGGAGAACGAACACGGTTCTGGGAGCAATCAAACGAGTGTTATGTTACAACATAACTCGCCTGTTATTAAATTAGAACCACCTTCCAATCTATCGGACAGTCCCGTCAATCTTTTGACCGTTAAAACTTTCCCATCTTCTTGGATAAaccaacaacagcaacaacaacagcaacagcagcaacaacaacatagCGTGCAATCGCAAACGCAAATGCAATCGCAAAGCGAGGAACCTTGGCCAGGACCGTCGAATCAATTGGCAATGAGTAATCATCATTTGCAAGCATTATCGGGATTTCCAGGTGCCCTGGCATCGTACCTTCCACTGTCAACGTTTCCATTGACCGATCCGACGCATATTCCAAGAACGTCGATAGCTCCTGTTGCCCCGGTTAGGATATTCAATCCCGAGGCTTATTGCGATCTGTGTAACaaagaattttgtaataagTATTTCTTAAAAACGCACAAGGCTAACAAGCACGGTATTTACGTGGATTCACCTGGACCGAATCCGAATGAAAGTGCCAACAATGTTCCTACACAATTATTTCCAaccggtggtggtggtggtgctgttggtggtggtgttgttggtggtagtggtgttgTTGGTGGATATTCAAGCAACACAATTAAATTGGAACCMCCTGCCACTCCGCCGATGCCAAGCGTACCATGCGAAATTTGtcaaaaacgttttaaaaacgAGGAATCCGTTAGGAAGCACAAGCAAAAGATGCACAACAACGAGTCGATCGAACATACCGATCAATCATTACCTGCTTCTCAAAGCGAAGACGACAGGGAGACACCGCGTAGCAGTCCTGGTGGTATCGAGTCGCTTTTCAAACAAGACTTCGGCATGGAACAAGAAGAGACGACGTTTATGCCAGCACCGAGACACCTGTCTCCCCAATCGATCCAACAGGCACGCGATTCTGGATTCAACGCCgatcgtcttcgtcgtcttgGTGTCATCAATCCCGACGCGTTCTGCGAAATATGTTGCAAGGAATATTGCAACAAGTATTTCTTGCGTACCCACAAAATGAAACGACACGGTATCGTTATACAAGACAACGAAAAGTCACCCAGCAATCCGGCGGCAGCATTGACCTGGCACCAGGTACAAACTAGCCCATTGAATTTAATCGTAACCGAATCCGGAAACGGATCCGAATCGAACGATCGTACCAACGACGATTACGAGTGTAAACCTTGCGGAATAAGATTCCAAACTATCGGACTTTATCAAGCACATTGCAGGAAAATGCACGAGAATAACGGTGAAGAACACTCGCCCAGGCAAGAATTCGATCAGGACACGTCGCAGGATCAACGCACGGATTCCATTTCCGAAGATCTTCAAAAACTTCAAACGATGATCTTACAATTGAATGGCTTGGATCAATCGGTTATCGGTAAGGTGTTACAATCCTGTAACATTTGTGGAAAAGAATGCGAATCGAGATCCGCATTAAGAATTCACATGGCTACCGAACACGGTAACGTCTCGGATAATCCCCTTTCACCTGGTCAAGAAAAATCACCGAGTAATACCAACGTAACGGCATTTTGTACGTTGTGCGAGAAGGATTATGTTAATCAGGAAGCTTTGAAAAAGCATATCGTCGAGGAACATCAAGCTACTCTGCCAAATCCTTTGTTACAAGTACCTACGACTACGAGTTCTAGTTCGATAATTAATTCGACGACCAATCCGACTACACCCAACAGTAACAATCAAACGCAATCGGATAAAAAGATTGCGTCTATGACACCTACTTCGAGTTACTGCGTTATTTGCAATAAAGAATTGTGTAACAAGTATTTTATGAAAACGCATATGCAAAAGATGCACGGAATTCAGATAGAAAACGGCGCGCAAATAGGTGGCGTAATATGTAACATTTGTAACAAGGAATTGTGcagtaaatatttcttaagagTACATAAACACAACAGTCATGGAATAGTCAACGAAAATACTTCATCTTCCTCCTCGGCTAAACAGGAATCGTTCGATGCATCCAGTTCCGAGGATGCTGCATTGAAACCGGAACAATTGGGTGATCTTAGTCATcgttattttacatattttaccGAAGTTTGTCCGTTTTGCAGTAGAAGGTTTCGCAGTATAAAATGGCTTAAAGCACATCTTTTAAACGATCATGGAAAAAATGGTATTGACAAGTGGCGCGAGATGGAACAACAAAATCAAACGTCAACGTCGAAAAGCAACAATCGGTcggctactgctgctgctgctgctgctgctgctgctggtaaTTCGTCGAAATCAAGCGCACAATTATCCAATTTGAAAATACCAAATGGTTTTGAATTGAGTCAACAAAACAAACCGACCGATTTAACGGGCTTGGGAAATCAAGTGTTGTCGAATTTATTGGGTTCTTCTTCGGACGATCAACAATTGAAAAGTTATCGTTGTTCCTATTGCAATTTTTCCACAACCGTAttaccatttttatttctacacgAAAGATCTCACGTTAATACGCAGGAAAATATCGAGACCGAGAGTAATACACTTCAATGTCCGATATGTTCGCAAAGATTTCATCAGCCCGAACAATTGCATCAACATTTGTTAACGAGACATCAATTTTCAGCATTGCTGACGCAATTTCAAACACCACCGATACTTCAAACACCGAATGTTGATCAAGAAAAGCTTGGTATACATTTAGATTCGAAAGATACCAAATTGGAAATAGAAACTAAAGAGGACAATAGTGTAATCAATCAAACGCAAATCAATCAACCAACGCAAATCCAATcggaacaacaacaaatgaTAAATCCGAAAGTTCAAGAGGACAACAACCCAGTCCAAGTAACCCCGCACGGAACTTTCAAATGCGCTCAGTGCGGTTATGCAACGACCAATGTAAACAGGATTAGAAGGCACGTTAAAAAGGATCACACGGCTATCGGTGATCCAACTGACAGCGTAATAGCTGAACTTAGTAAAACCTTAAAGGATATTGCCAACAGACACAAAGTACCAGCTTGTTATGCCATGCCTCAAGATGCTAATGTAAATATTGAGAAAACGATAATGCAACCATTCCTGATCGATGAACAACAGGATCCCTCATCGGTTAACAGTGACGATTCCAATTCGGAAAAACGATTTACACCGGCTCTCGTTTATTTACCTGTTAAATCACGAATTAGCAGTGCGCTTACCGCATCCTTCACTCTGACGCCTgcttaa
Protein Sequence: MMSSSMAQETTTTTTTTTTTTISDLTEVDSDGGGSSSNERDLRKKGLRLHGDADLAGPKKRRKQTTPVRFSSSLMSGLQDESNEDDDEEEVEEEGELVGEVENHHHHSSMEDDNLQSDIRCQYCGMFLENREMLNVHLENEHGSGSNQTSVMLQHNSPVIKLEPPSNLSDSPVNLLTVKTFPSSWINQQQQQQQQQQQQQHSVQSQTQMQSQSEEPWPGPSNQLAMSNHHLQALSGFPGALASYLPLSTFPLTDPTHIPRTSIAPVAPVRIFNPEAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGPNPNESANNVPTQLFPTGGGGGAVGGGVVGGSGVVGGYSSNTIKLEPPATPPMPSVPCEICQKRFKNEESVRKHKQKMHNNESIEHTDQSLPASQSEDDRETPRSSPGGIESLFKQDFGMEQEETTFMPAPRHLSPQSIQQARDSGFNADRLRRLGVINPDAFCEICCKEYCNKYFLRTHKMKRHGIVIQDNEKSPSNPAAALTWHQVQTSPLNLIVTESGNGSESNDRTNDDYECKPCGIRFQTIGLYQAHCRKMHENNGEEHSPRQEFDQDTSQDQRTDSISEDLQKLQTMILQLNGLDQSVIGKVLQSCNICGKECESRSALRIHMATEHGNVSDNPLSPGQEKSPSNTNVTAFCTLCEKDYVNQEALKKHIVEEHQATLPNPLLQVPTTTSSSSIINSTTNPTTPNSNNQTQSDKKIASMTPTSSYCVICNKELCNKYFMKTHMQKMHGIQIENGAQIGGVICNICNKELCSKYFLRVHKHNSHGIVNENTSSSSSAKQESFDASSSEDAALKPEQLGDLSHRYFTYFTEVCPFCSRRFRSIKWLKAHLLNDHGKNGIDKWREMEQQNQTSTSKSNNRSATAAAAAAAAAGNSSKSSAQLSNLKIPNGFELSQQNKPTDLTGLGNQVLSNLLGSSSDDQQLKSYRCSYCNFSTTVLPFLFLHERSHVNTQENIETESNTLQCPICSQRFHQPEQLHQHLLTRHQFSALLTQFQTPPILQTPNVDQEKLGIHLDSKDTKLEIETKEDNSVINQTQINQPTQIQSEQQQMINPKVQEDNNPVQVTPHGTFKCAQCGYATTNVNRIRRHVKKDHTAIGDPTDSVIAELSKTLKDIANRHKVPACYAMPQDANVNIEKTIMQPFLIDEQQDPSSVNSDDSNSEKRFTPALVYLPVKSRISSALTASFTLTPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01233944;
90% Identity: iTF_01235306; iTF_01233945; iTF_01233944;
80% Identity: -