Basic Information

Insect: Polistes metricus
Gene Symbol: RREB1
Assembly: GCA_010416925.1
Location: QUOH01000006.1:7105606-7127539[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.037 2.5 8.4 0.3 1 23 46 68 46 68 0.96

2 16 0.00042 0.029 14.5 0.3 1 23 82 104 82 104 0.97

3 16 1.8e-06 0.00012 22.0 0.8 1 23 110 133 110 133 0.97

4 16 0.074 5.1 7.4 0.1 1 23 229 253 229 253 0.93

5 16 0.85 58 4.1 3.1 2 23 259 281 258 281 0.93

6 16 2 1.4e+02 2.9 2.6 1 20 337 356 337 358 0.85

7 16 0.43 30 5.0 0.2 1 23 473 495 473 495 0.96

8 16 2.4e-05 0.0017 18.4 0.3 1 23 504 526 504 526 0.98

9 16 0.0011 0.073 13.2 2.8 1 23 532 555 532 555 0.97

10 16 0.0011 0.078 13.1 2.7 1 23 951 974 951 974 0.96

11 16 0.00014 0.0098 16.0 0.1 2 23 1258 1279 1257 1279 0.97

12 16 7.1 4.9e+02 1.2 4.7 1 23 1285 1308 1285 1308 0.95

13 16 0.0035 0.24 11.6 2.2 1 23 1345 1369 1345 1369 0.97

14 16 0.88 61 4.0 6.9 1 23 1457 1480 1457 1480 0.96

15 16 0.018 1.2 9.4 0.3 2 23 1533 1554 1532 1554 0.92

16 16 0.014 0.96 9.7 5.1 1 23 1560 1582 1560 1582 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.037	2.5	8.4	0.3	1	23	46	68	46	68	0.96
2	16	0.00042	0.029	14.5	0.3	1	23	82	104	82	104	0.97
3	16	1.8e-06	0.00012	22.0	0.8	1	23	110	133	110	133	0.97
4	16	0.074	5.1	7.4	0.1	1	23	229	253	229	253	0.93
5	16	0.85	58	4.1	3.1	2	23	259	281	258	281	0.93
6	16	2	1.4e+02	2.9	2.6	1	20	337	356	337	358	0.85
7	16	0.43	30	5.0	0.2	1	23	473	495	473	495	0.96
8	16	2.4e-05	0.0017	18.4	0.3	1	23	504	526	504	526	0.98
9	16	0.0011	0.073	13.2	2.8	1	23	532	555	532	555	0.97
10	16	0.0011	0.078	13.1	2.7	1	23	951	974	951	974	0.96
11	16	0.00014	0.0098	16.0	0.1	2	23	1258	1279	1257	1279	0.97
12	16	7.1	4.9e+02	1.2	4.7	1	23	1285	1308	1285	1308	0.95
13	16	0.0035	0.24	11.6	2.2	1	23	1345	1369	1345	1369	0.97
14	16	0.88	61	4.0	6.9	1	23	1457	1480	1457	1480	0.96
15	16	0.018	1.2	9.4	0.3	2	23	1533	1554	1532	1554	0.92
16	16	0.014	0.96	9.7	5.1	1	23	1560	1582	1560	1582	0.98

Sequence Information

Coding Sequence: ATGGATTATTCGACAAAAGTGACTGTAAAAAGCGAGCCAGATCCAGAACAAGAACAGGAACACGAAGAGGAACAGGTTGAGATACAGGCGGATGCAGCATCTCCTACTTCtagtATCGATTTACCCGAAAATACACACCCGTGTCCAGCTTGTCCGTCAATACTTCCGACATCTCACGATCTGACGAATCATCTGCGCGAGCATAATTCACCAAGGAGTACAGATTACGGCGGAGAAGAGGATTACTGTTGTGCTATTTGCCAAAAAGTCTTGAGTTCGGCAAGTTCATTGGACCGTCATGTACTCGTACATTCGCGTGAAAGACCATTCAAGTGTAAATATTGTGACATAGCTTTCACAACCAATGGTAATATGAACAGACATGTTAAAAGTGCTCATCGCGGTGAAAGATCACCTCCGCAGAGTTACACCGAGTCAGAAAGTACGAGCAACGATTCGATAAACTCGTCTAGAAGGCAACCATTAGAAGaacacaacaacaacgaaaTATCGAAACGTACATCGCCAAATTTCTTGATTAGAGAAAGATTAGCTAAGAATTTAACGAACAAACGTAAATCCCCGTCGTTCACCAGGGAAGATGAAAATCCAAGAAAGCACAAGATCTTGTTGAACAATTCGAGGACAGAGATCAAACGTACGCCCACGGAGACGCAAAATTCTTACAATTGTCCGGTATGCAATAGGCAAGACTTCGCAACGAGCGGTCTCCTGGAAACACACTTGGAACAAAATCATCCCGAATTCACGATAAGGTGCGAACCATGTAACCTATCTTTCAAAAATCATCGAGTATTAAACTTACACCGATGCATGATACACTTTTCTGACTATCCCGTTGGAATCCCTGCGAGAAATTTACGTAATTCCGTAGTAGGATTCGACGATTTAACTTTTGTTGATTTTACATCGGCTAAATTTCCAACTATTGCTAGGGCTATGTGCGAGCAAGCTATGCACCGACCGGCATCCGGAGAAGGTACCAACTTCCAGTGCAGCAAATGTTCAAGAGCATTTCCTTGTTTCAAGTCAATGAAAGAACACCAAAATGAATGTGGTAAGTGTAGGTCAAATTTGCAATGTAGACCGATAGATATTGGGGAATCCCAGAGGGATTATTTTTTCGCGGGCCTTGAATTGCACAATAAAGCGGCATTGACCGAGGCCAAAGATGGAAAGGATTTAGCGGATATAGAAAGCATTTTGTCCGTTACATCGGGTCCAATTTTACAAAACTTTCCCCGTTCGGATGCTAGTACACctgagaataatattaaatttaattcgagCGTTGGTTCTTCTGGTTCGTCAGGAACGATGTCGTCTGAATATCACGAGGAAGAGGCACAGGATTTATTCGCTGCCGAATTTAGGAAGATGAAATTAAAAGGAGAATTCCCTTGCCGATTGTGCACATCAATATTTCCTAATTTGAGGGCTTTGAAAGGACATAATCGTGCTCACATGGGCGTAGGACCAGGAGTTCCATATCCTTGCAACATGTGCCCTTATACTAGTACCGATAAGGCCACTCTTGTAAGGCATTTAAGATCTCACAACGGTGATCGGCCGTACGAGTGCTCGTTATGCAATTACGCTTTTACCACTAAAGCAAACTGCGAGAGGCACGTTAGAAATCGTCATGGCAAATTAACAAGGGAAGATATCAAAAGTGTTTTGATTTATCATCCGAATGAGGACTCGACGAATGATAACATCGGTAATTCGCCTAGAGTGACGAAAGACGAGGCGAGAAAAAGTTTGATCTATCCGAACGATAGAGAAGATTCgatgcaacaacaacaacagcaacgtTATCTGCCAATTCCGATTGACTCTAAAGGTGACATTAGAGTAATAGAAGAAGCTAAATTACCTAGCCCTGAATTGGCTTCTTCTATTCGTAATATGATAGTTAATCATTGCGAAAGCAATGATACTTACGGGAGATCGAGCATACCAGGTTCCGGTCTTATTTCAAGAACCATGGAAGAAGCTACCACGTCTCAAGATCAAAGTGGTAGAGCTGATGATGATCTTGAATCAAGGTCATCCAATGAAAGCGTGCCTCTAGTCATTAATAACGAATCAGATATGCACCAAAGAATGCAAGCTAGTCCGattaatttgaagaaaatgtCTAACCCATCTAACACCGGAAATTCAAATCAGGATGGACCGTTGGATCTTAGCATGGACGTTCTAGATTTGAGCAAGAAGGCTAAGGAAAGAAACGGTGCTGGATCATTGAGATCTAACGAATATCCTAACAACGATCGTAGAGAATTTTACGATTCTACCAGTCAATTATTTCTCACTCAGGCTCTTTTGCAAGCAAGTCAAAATACTTCACCGGGTACTTCGCCTAGTACCTCCCAAGGAAATTCCCAGACAAATCCTTTACAAAATTTCTACGCCAATGctcaaataatttatcgcaATTTGGGATCGATTTCTAACCGAGTAAATGCTGGAATTTTATCATCTTACATGTTCAATTCGCAATTTTTTGGACAAGACTTAAACATCAGTGACAGAATTCAAAAGGAATTCGCTAGGGGCTTGCAATTAACCAGCGGTGGTACTTTAGTTGATCCATcgggaaataataatttccccGCATTTCCACAAGCCAACGATGCCCCGTCGCAAATGGTAACCGATCAAAATGATTATACCAGTTTGCTCGGTACGAAGATGACCAATAAGACTATATCACCTCGCGAAAAGATTGATAATTCGGCTTCAACGAATTCGGTTAAAATGATCATCAAGAATGGCGTATTAATGCCTAAACAAAAACAACGAAGATATCGTACCGAACGACCATTCTCTTGCGGACACTGTTCCGCTAAATTCACATTACGAAGTAACATGGAGAGACACATAAAACAACAGCATCCCGAATTTTGGAGTCAACGACCACGGGGTGGTCATTCAACTAGAGGTAGACCACCAGCAAATcatcaaaatataatgaaaaattctgGACAGTCAAACTCACAATCGTCATCCCAATCTTATTCCAGTATACTCCCCAAAGCTGATCCATCTGCAACGACAGTAGAATCAACCGGTAGACATTCGATTTCAGAACAAGTGAAATATGCTATTCTGGCGCAACAATTGAAGGCTAACAAAATGGACGATAACGATACCGACGAAGAATTGATCATCGATGAAGATCCAGTTGATAAGGAGATGCAAGAATCTCAGGAACAAACTGAACAACGTTCGACGAGTTTGTTGAGAGGACAATTGGAAGGTAACGAATCTAACAAGGATATCGTCGTGAAggaagaaatattagaaagagATTCATCCGACGTATTTAATAACGAACAATCTAAGGAACATAACAATACCAATGAAAACGGCCAAAGTTCTGGTAACGAACATGCACTCGATGATAAAACGGAAGAGACTACTTTGGATGCTAATTCGAGACACGCATTCAAAATGGATAATTGCAATGATACCATTCAAGATAGACAAGAGGATAATACTGCTGATCTTGCTAGCGTATCGGAATTATTGGACAACGCTTCTCATCAGTATCAACACTTTCAACCGCAATATCTGAGCGACGAGGAAGGTTTGGTCGCGTCTACGAGCGATTTCAATAATTCCGGAAGCGAGGATAAATCTGACTCAGTTAATTCCGGAAATTCTAACAACGcttcttcgaaaaaaaagaagaaaaagaaaaagaagaagaaatcggCTTATTCTTTAGCACCCAACAGAGTAATGTGTCCCTATTGCGATCGTCCATTTCCATGGACGTCATCTCTCAGAAGACACATCCTTACACATACCGGACAAAAaccatttaaatgtatatactgTTCACTTTTGTTCACCACCAAATCTAATTGCGATAGACACCTATTGAGAAAGCACAAAACTAATCCGTACAAGATAAGAAGAGCTAGAAATTCGTCATCGCCTGACAGTCAAGTTGTCAATACgaataatacattttctatGCGAAATGTTCCCGAAAGGCCGTACAAATGTAATCAATGTCCGAGTTCAACGTTCTCAACGTTAGGAAACTTGAAGAAACATCGTTCGACCAAACACTcgcgtaaaaataaattgagatCCGTTTCGCCGTCGACCGAGACGCAAAATAGTCCACTACCATCATCTAAACAAAATGATCTTAGCGATTACGAGAGCCGATCCTCAAGCGTGTCAGAGAATACGGAACAACAACAGGTATCACCGTCCGAAActcaaaaacaaaattcaaataattctaaCGCATCGTTGTCCAATACCGAATTGTCACGATCACGAAGAACTTCACCGAGATCATCACCCGGTCCTAACGATGTACCATTCAAGTGTCATCTTTGTGATTGTGGATTTGCCGATCGTCACGATTGTTTGGAACACATCAAGATCAATCATAATGAATCTTACGAGATGCTCGTAGCAAAGGGTGCTATGGATATGGATATTGACGGGCTGGAAGATCATCaagtaccaccaccaccacctcagCAACATCTTAGCGATggggaggaaagaaaaggccGATTTCCAGATTACAGTAATAGAAAAGTAGTCTGTGCCTTTTGTATAAGAAGATTTTGGTCAGCCGAAGATCTTCGTCGTCATATGAGAACGCATACAGGGGAAAGGCCATTCTCGTGTGACATTTGTCTTCGTAGATTCACATTGAAACATAGCATGCTGCGTCATCGTAAAAAACACGAATCAGTCGATTCAACGATGTACGTTGGTACCAGCGGTGACGAAGAAAATTCACCTACTCAACCACCTACGATAACACCCCGTACACAAAAGCAACCACCAGTTTTAATGGCCACCAATATCAATAATTCGAGAATTCAAGATAGAATCTCGTTGTCTGTTGCAACCGGTGATGCCGCGCCAGGAGGTGGTTTTATGAGATACAACAGTTACGAAAAATTAACAACATTTGCCGGAAAACTTACCGCCAATAACGCTCAGCTTcataataatgcaataaataatgaattatccGAAAATACTGACAACGATTTGATCTCGAATCTTTTAGGAATACGCGACAAAAGTTTTATCGATAGAGTTCTTCAAGCATCACCCGACGATGCTGCTAAATTGTTAGGCGTACAACGTAGTCACGAATGA
Protein Sequence: MDYSTKVTVKSEPDPEQEQEHEEEQVEIQADAASPTSSIDLPENTHPCPACPSILPTSHDLTNHLREHNSPRSTDYGGEEDYCCAICQKVLSSASSLDRHVLVHSRERPFKCKYCDIAFTTNGNMNRHVKSAHRGERSPPQSYTESESTSNDSINSSRRQPLEEHNNNEISKRTSPNFLIRERLAKNLTNKRKSPSFTREDENPRKHKILLNNSRTEIKRTPTETQNSYNCPVCNRQDFATSGLLETHLEQNHPEFTIRCEPCNLSFKNHRVLNLHRCMIHFSDYPVGIPARNLRNSVVGFDDLTFVDFTSAKFPTIARAMCEQAMHRPASGEGTNFQCSKCSRAFPCFKSMKEHQNECGKCRSNLQCRPIDIGESQRDYFFAGLELHNKAALTEAKDGKDLADIESILSVTSGPILQNFPRSDASTPENNIKFNSSVGSSGSSGTMSSEYHEEEAQDLFAAEFRKMKLKGEFPCRLCTSIFPNLRALKGHNRAHMGVGPGVPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNDNIGNSPRVTKDEARKSLIYPNDREDSMQQQQQQRYLPIPIDSKGDIRVIEEAKLPSPELASSIRNMIVNHCESNDTYGRSSIPGSGLISRTMEEATTSQDQSGRADDDLESRSSNESVPLVINNESDMHQRMQASPINLKKMSNPSNTGNSNQDGPLDLSMDVLDLSKKAKERNGAGSLRSNEYPNNDRREFYDSTSQLFLTQALLQASQNTSPGTSPSTSQGNSQTNPLQNFYANAQIIYRNLGSISNRVNAGILSSYMFNSQFFGQDLNISDRIQKEFARGLQLTSGGTLVDPSGNNNFPAFPQANDAPSQMVTDQNDYTSLLGTKMTNKTISPREKIDNSASTNSVKMIIKNGVLMPKQKQRRYRTERPFSCGHCSAKFTLRSNMERHIKQQHPEFWSQRPRGGHSTRGRPPANHQNIMKNSGQSNSQSSSQSYSSILPKADPSATTVESTGRHSISEQVKYAILAQQLKANKMDDNDTDEELIIDEDPVDKEMQESQEQTEQRSTSLLRGQLEGNESNKDIVVKEEILERDSSDVFNNEQSKEHNNTNENGQSSGNEHALDDKTEETTLDANSRHAFKMDNCNDTIQDRQEDNTADLASVSELLDNASHQYQHFQPQYLSDEEGLVASTSDFNNSGSEDKSDSVNSGNSNNASSKKKKKKKKKKKSAYSLAPNRVMCPYCDRPFPWTSSLRRHILTHTGQKPFKCIYCSLLFTTKSNCDRHLLRKHKTNPYKIRRARNSSSPDSQVVNTNNTFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHSRKNKLRSVSPSTETQNSPLPSSKQNDLSDYESRSSSVSENTEQQQVSPSETQKQNSNNSNASLSNTELSRSRRTSPRSSPGPNDVPFKCHLCDCGFADRHDCLEHIKINHNESYEMLVAKGAMDMDIDGLEDHQVPPPPPQQHLSDGEERKGRFPDYSNRKVVCAFCIRRFWSAEDLRRHMRTHTGERPFSCDICLRRFTLKHSMLRHRKKHESVDSTMYVGTSGDEENSPTQPPTITPRTQKQPPVLMATNINNSRIQDRISLSVATGDAAPGGGFMRYNSYEKLTTFAGKLTANNAQLHNNAINNELSENTDNDLISNLLGIRDKSFIDRVLQASPDDAAKLLGVQRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01512393;
90% Identity: iTF_01233874;
80% Identity: -