Pmer008734.1
Basic Information
- Insect
- Polistes metricus
- Gene Symbol
- -
- Assembly
- GCA_010416925.1
- Location
- QUOH01000005.1:8878219-8882503[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.8 3.3e+02 1.7 7.4 2 23 265 287 264 287 0.96 2 20 0.042 2.9 8.2 4.2 1 23 338 360 338 360 0.97 3 20 0.079 5.5 7.3 0.5 1 23 409 431 409 431 0.98 4 20 0.015 1 9.7 0.3 1 20 486 505 486 507 0.94 5 20 1.3 88 3.5 3.9 1 23 519 542 519 542 0.89 6 20 0.0011 0.077 13.2 2.4 1 23 547 569 547 569 0.97 7 20 8.4e-05 0.0058 16.7 0.4 1 23 616 638 616 638 0.97 8 20 0.00062 0.043 14.0 0.1 1 23 644 666 644 666 0.97 9 20 2.4e-06 0.00017 21.5 0.4 2 23 710 732 710 732 0.95 10 20 0.048 3.3 8.0 1.1 1 23 739 762 739 762 0.92 11 20 0.00023 0.016 15.3 0.5 2 23 769 791 768 791 0.94 12 20 0.01 0.71 10.1 0.1 2 23 799 820 799 820 0.94 13 20 0.0093 0.64 10.3 0.1 1 20 880 899 880 899 0.97 14 20 0.0025 0.17 12.0 0.3 2 23 919 940 918 940 0.95 15 20 0.00012 0.008 16.2 3.9 1 23 954 976 954 976 0.95 16 20 1.7e-05 0.0012 18.9 1.5 1 23 996 1019 996 1019 0.95 17 20 0.01 0.72 10.1 2.2 2 23 1072 1094 1071 1094 0.94 18 20 0.0035 0.24 11.6 0.4 2 21 1121 1140 1120 1143 0.88 19 20 9.5 6.6e+02 0.8 1.1 3 23 1181 1202 1179 1202 0.90 20 20 4.5 3.1e+02 1.8 2.2 2 23 1232 1254 1232 1254 0.92
Sequence Information
- Coding Sequence
- ATGGACGACGTTGAACTACTGAACGTTGAAAATGTGTGTAGATTGTGTCTATCTGTGGAGGAACCAAAATCCTCGATATTTCAGACGGAAGACTCTCCTTCTGCTGTACcattagttattaaaatacaagCATGCTTATCGCTTCAGATTTTGTCTACGGATAAAGTATCCACATTGATATGCTCTTCTTGTATAGATAATGTAAATCAATGGTATAATTACAAGGAAGCTTGTTTTCATTCTCAAGATAAACTACAGAAATGGCTAGAAACTCATCCGCAGACAAATCCAGtgGTTGTAAATATAAAGGAAGAACCTATGGATATAGATTATTGCGAAGATAacactaaaacatttgaaTCCAACAGCGAATCAAGTGCTCATGTAACAAATCATGCGAAGTCAGCaggaaaattttattctaaaagtGAAGCTCGGGCAGGAGTACAAATCGACAAGACATATGGTTTAGGTAaagataagaatttaaaaacttcTCAATCATCTTCATCGAAGAATGTCAACAAGGAAGAATGCAGACTAGATAAAGAATATTGTAATGTATTGATTAAAACTGAACCAGAGGATGATTACGATACAGATTGTACAATAGAAATAGAATCGGTAAGCGGTACCGAATTACTTTTAAATCCAATGGCAATTGCTAGTAAAGAGGAGAGAATTATGGAAGCCGATTCTACTCAAAAATCAAATGCGACTACTCCGAATAGtagaaagaagatgaaacgTGGTCCTCACACACATTTCCGAGGTACACGCGTTTATAAACAGAAATGTATGCATTGTCAGATAAATCTACATTCTAAGCATTCGTATATAAAACACATGGAAAGATTTCATAGCGAAGATTGcgaaaataagaatttatctAAGTCGACATCTGCCGATGAAGAAGAACTGATAGAAGACGTGGAAGATGAATTGACGAGTATGGAGAACGATGCACCATTGACGGAGGtgcaacaaaatataattagtcAATTGAAGACATTTTCCTGTTACTCGTGTCAACAGACTTTCAATGATAGAAAACATACACTTATTCATATTCGTCAACATATGCCAGACTTAAGGCCATACACTTGTATCGCATGTTTAACACAATTTCGTGATCGATCTATGTACAAACTACATTGTAGCGCATCCTTCGAATGTGCAATGAAAATTGCATTGGTTATACCTAAGGAAGGAAACGAAAAGTATTTCACTTGCAACATGTGTTTACGACCGATggcaaatagaaaagaattattaagtCATTTGTCTAAACATTCAGATAAACAATATGAAGAAATGATGTCACCGATGAGATCGCCGCCCAAATTACAACCTATGACACCTTTACCAAGTCCAAAAAAGGACATTTTACCAAAATCACCTCAGATGAATAAAGCCCTTCTTGGACCTTACAAAAATGGTGATCCAGCGCATAATCATCCCTGCAATTTGTGCGGTATGATCTACAGATACAAGCCTAATATGTTAAGACATCATGTAATTTGCATCAGGCTATCGCCGGAATTAAGGACTTGTTACAGATGTGTACATTGTGGTATGACTTTCCTcgtttttaagaaatttcacAATCATATCACTATCGatcataagaaaaaagaattcgttTGTTTCGAATGTAACGCTAAGTTCAAATCCCCGAGTGATTATCTGACGCATCACGAGAAGCATCGACAAATGGCCGTCAGTCAAAATCAGGAGGTTACTAGTAATCAGATAATGTCCCCTCATCGTGGGCAAAGTCCATTAAAATCGTGGAGCGATAACGAGGAAGCTACGGTGTCAAGACGAAGCATGGAGGGTCAACGATACGTTTGTAATCTATGCGGTCAAGATTTTACAACGAGAGCCAAATTGGCCTCGCATAAGAATCTTCATctcaaagtaaaaatatattcttgcGTTATTTGCCGCAGTATGTTTAGCAGTGCTGGTGCTTTAGAAATCCATATGAAGGATCATGGTATCGAAGATCCGCAAGAAAGAAATGCTAACAGTTCTTGCGTTGAATATGATCGACTTGACAATAGACCGCAAGAAATTGATACTCTTAACACGAGTTCTGTCTCGGACACTGGTGGACGAGAAAATGTATGTAACATATGCGGAAAGATATTCTCCAATTATCCAAATTTGAGAAgacattttagaaatattcaCAAGGATAACAAAGCACGTTTTACTTGTATACGTTGCTCGTTatcttttaaaacaaaagagCTTTATGAGAATCACGTGAAGCTCGATCACAAAACAAAAGTCATGCTGATGTGCAGCCAGTGTCCCAAGACATTTAGCTTTAAAGCTAATTTGGATCTTCATTATAGTAGTGCTCACGGAGATAAACCCGGGAATCGAGAATGCGATATATGTGGAAAAGTCTTTTTGGAAGAAGCCTCCTTGAAGATTCATCGAAGCTGGCACAATCGAGCGAATTCGCGGTTTTACACTCGATCATTTTTAAGCGACGAGATCAAACCTATAACTTCGCTTTCTCCTACcgaaattaatgataataatttagttgCTTCGTCGCCCGAACGTCCAGCTAGGGCAAGAAAATCTTTTCCCAATCCACCACCTACAAAGCCGCAAAACGATTACCAGTGTCAAGTATGTGACAGTAAATTCGAAGATGTAGTCGAATTGAGGAAACATTTGTGGGATGTTCACTGTGCTCGTAATAAACCAGAGAGAAGTTTCTCAGGTGATGAACTTCAATGTCAGTTATGTACCAATATTTTTCCCGATCAAAAAAGTCTAAAGTTACATATGGATTGGCACAAAGCCAATCCAATATTGAGCAATATACAAAAGCAAACTTTCCTTTGCGAGATATGTAACAAACATTACAGCTCAAAGAAAGCTTTGACGAAACACAGAAAGCTTCACAAAGCAAACACGGTAGCTTCAATTAAGTTCCAATCGCTTAGTAGAAAGAGCGCTCAATATCTCTGCGACGTCTGTCGAAAGGTCTTCAGCAGCAATCAATCATTGCAACGACATAGAATGTCTTTTCACAACGATTTACAGTCTCCTCGGTCTCAAGCATTTAGTAGTAGTACTCGAAGAGTATCCAATGAGGAAtacaaaatgaagaaaatggatatggaagtaaaagaagaatctTCAAAAGAGTTTACTTTGAATACAGTCAATGCTATTAAGAAACCGGTTACTTGTCATTCGTGTAAAAAGACATTCCCAAACATGAGTGTTTTATACAAACACAAACAACTGATTCATAAACCGAGAATAACAAAAGTGATCGGTAAAACCCCAATAAATGAATGTGTTCCTATACAAAATGCTGACGGTAGAATTTCGTGCAATATATGCGGTAAACAGTTTTGGTCGATGTCAAATTTGAAACAACATTTTGCCGCGAAGCATAGAAACAATCCAAAAAGTCGTTGTACCACGGCTAGCTGTAATCCTACATATTCGCTTCTATCGCAGTCAATAAAGAGCGAATCTTTGCCACACAAAGCAACGATTATCTGTTGTAAACTTTGCAACCGTCATGTTTGGAGTAGAGAAGAGATAGCTATTCATATGCTTTCCGTACACGGTACAGCTTATGAACCTGATACCAACAGTAATTTCCACAGAGAAACCGATCTTACCACTTATGTTGTTGAAGGAGCGGTTAATGCGACTTGTCCTTGTTGCAATATCAAGTATCCTAACAATAGAGCTATGAAGATTCATTACTTTAAATTCCACGAAGCTACGGACTAA
- Protein Sequence
- MDDVELLNVENVCRLCLSVEEPKSSIFQTEDSPSAVPLVIKIQACLSLQILSTDKVSTLICSSCIDNVNQWYNYKEACFHSQDKLQKWLETHPQTNPVVVNIKEEPMDIDYCEDNTKTFESNSESSAHVTNHAKSAGKFYSKSEARAGVQIDKTYGLGKDKNLKTSQSSSSKNVNKEECRLDKEYCNVLIKTEPEDDYDTDCTIEIESVSGTELLLNPMAIASKEERIMEADSTQKSNATTPNSRKKMKRGPHTHFRGTRVYKQKCMHCQINLHSKHSYIKHMERFHSEDCENKNLSKSTSADEEELIEDVEDELTSMENDAPLTEVQQNIISQLKTFSCYSCQQTFNDRKHTLIHIRQHMPDLRPYTCIACLTQFRDRSMYKLHCSASFECAMKIALVIPKEGNEKYFTCNMCLRPMANRKELLSHLSKHSDKQYEEMMSPMRSPPKLQPMTPLPSPKKDILPKSPQMNKALLGPYKNGDPAHNHPCNLCGMIYRYKPNMLRHHVICIRLSPELRTCYRCVHCGMTFLVFKKFHNHITIDHKKKEFVCFECNAKFKSPSDYLTHHEKHRQMAVSQNQEVTSNQIMSPHRGQSPLKSWSDNEEATVSRRSMEGQRYVCNLCGQDFTTRAKLASHKNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPQERNANSSCVEYDRLDNRPQEIDTLNTSSVSDTGGRENVCNICGKIFSNYPNLRRHFRNIHKDNKARFTCIRCSLSFKTKELYENHVKLDHKTKVMLMCSQCPKTFSFKANLDLHYSSAHGDKPGNRECDICGKVFLEEASLKIHRSWHNRANSRFYTRSFLSDEIKPITSLSPTEINDNNLVASSPERPARARKSFPNPPPTKPQNDYQCQVCDSKFEDVVELRKHLWDVHCARNKPERSFSGDELQCQLCTNIFPDQKSLKLHMDWHKANPILSNIQKQTFLCEICNKHYSSKKALTKHRKLHKANTVASIKFQSLSRKSAQYLCDVCRKVFSSNQSLQRHRMSFHNDLQSPRSQAFSSSTRRVSNEEYKMKKMDMEVKEESSKEFTLNTVNAIKKPVTCHSCKKTFPNMSVLYKHKQLIHKPRITKVIGKTPINECVPIQNADGRISCNICGKQFWSMSNLKQHFAAKHRNNPKSRCTTASCNPTYSLLSQSIKSESLPHKATIICCKLCNRHVWSREEIAIHMLSVHGTAYEPDTNSNFHRETDLTTYVVEGAVNATCPCCNIKYPNNRAMKIHYFKFHEATD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01233839;
- 90% Identity
- iTF_01232561;
- 80% Identity
- -