Pmer008416.1
Basic Information
- Insect
- Polistes metricus
- Gene Symbol
- bab2
- Assembly
- GCA_010416925.1
- Location
- QUOH01000019.1:3867379-3892557[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.9e-13 4.9e-10 38.6 0.0 1 39 383 422 383 426 0.90 2 4 2.4e-12 3.1e-09 36.1 0.1 2 39 438 475 437 478 0.94 3 4 5.5e-19 7e-16 57.3 0.0 1 45 492 537 492 537 0.97 4 4 1e-18 1.3e-15 56.5 0.1 1 42 544 586 544 587 0.97
Sequence Information
- Coding Sequence
- atgaTTTATGCCGGCGGAATGGCTGGGCAGCACTACTGCCTACGTTGGAACAACTACCAATCCAACATGACATCCGTTTTCCATCAACTCCTGCAAAACGAGGCCTTCGTAGACGTCACCCTGGCATGTAACGAAGCTTCGTTGAAGGCACACAAGgtGGTCCTATCGGCCTGCAGTTCCTACTTTCAAAAACTCTTACTCTCAAATCCATGTAAACATCCAACTATCATCATGCCACAGGACGTATGCTTCAGCGATCTCAAATTCATCATAGAATTTGTCTACAGAGGAGAGATCGATGTATCTCAAGCAGAACTACAGTCGCTTTTGAAAACGGCCGACCAATTGAAAATCAAGGGCCTCTGTGAAGTACCTGAAAGTAAGGACGGGCCACCATCAGTGAGTTTAAGCTCACCACCGAGAGAACCTGGTTCACAAAGATTCAACTTTACCAGGTTGAAGAGACCTTATCCAAGGTATAAGAGAACGAGGACATCATTTGAGCCTCGTGCCACTGATTCTAGGCATTACGATAGAtataaagaggaagaggacaGTGATAGTTACCATCGCAAAAATAAAGAGAATCGCAGAGACTGGCAGGTAGAAGATGAAGAGTGCACGGAGGTGGCAGCGGCAGCAGCAGTAGTTCTGGAAAGCTGCCAACGTAACAGTAACAATAGCACCAACAACGCTAACGGtacaaacaacaacaacaataacgGTGACATGTTCTGTCACACAGGGCTAGGTCATTACGGTCATCACCCAGATCCTGAGGTAGATCTGCCTCCAGAAACACAGCCCACACCACCTAGCGCTACTTTGGTCGGTACCACCATCACTCATTTGCGAGACTCTGATCATCATTCGACTGAGATACAAAATTGCGATACAGTGAAGATCAAGTTCGAAACCCTGCACACGATGGATTCTTCGGACACGATCGATATCGACAGTCACATGTCGGACAGAGCTAGTGTAAGCTCAAAAAATGCTGCGGACAGCGATAATATGATGATGATAACGCCTGAACTTCTCGGACTCATGCCCTCTGGCAGTTCGATTCATTCGGACTCGGGTGAAAATAATTCGAGAGGTCATTCTGGACAGTCGAGTTCACATCATCATGGTAATAAATCATGGACACAGGAGGACATGGATGCTGCGTTGGAAGCATTAAGAAATCACGATATGAGTCTTACGAAAGCATCTgCTGCATTTGGAATCCCATCAACGACGCTGTGGCAAAGAGCTCATCGTTTAGGAATCGACACGCCAAAAAAGGACGGACCTACGAAATCCTGGAGCGATGAGAGTTTGAATAATGCATTGGAGGCACTAAGAACAGGAACGATCTCAGCTAACAAGGCATCGAAAGCTTTTGGTATACCTTCCAGTACACTTTACAAAATAGCAAGAAGAGAGGGTATTAGATTAGCTGCACCCTTTAACGCGAGCCCAACTACCTGGACACCTGCCGATTTGGATCGTGCATTAGAAGCAATAAGATCTGGTCAAACCTCTGTTCAGAGAGCTTCCACGGAATTTGGTATTCCTACGGGAACTCTCTATGGTAGGTGTAAGAGAGAAGGGATTGAACTCAGTAGAAGTAATCCCACACCTTGGAGCGAGGATGCTATGACCGAAGCTCTAGAAGCTGTCAgGCTAGGTCACATGAGCATCAATCAAGCAGCTATTCATTACAATTTACCATATTCCTCCTTGTACGGACGTTTTAAAAGAGGCAAATACGAGGAACCTGTAGTCGGTGATTTGTCACAGGACGGCACCAACTCACATTTTCATCAAAGTCCTACGCAGAATCACTCATCTACGATTCCCGATCAAATGTCTTATCAGGGTAGCTGA
- Protein Sequence
- MIYAGGMAGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFSDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESKDGPPSVSLSSPPREPGSQRFNFTRLKRPYPRYKRTRTSFEPRATDSRHYDRYKEEEDSDSYHRKNKENRRDWQVEDEECTEVAAAAAVVLESCQRNSNNSTNNANGTNNNNNNGDMFCHTGLGHYGHHPDPEVDLPPETQPTPPSATLVGTTITHLRDSDHHSTEIQNCDTVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGENNSRGHSGQSSSHHHGNKSWTQEDMDAALEALRNHDMSLTKASAAFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDLSQDGTNSHFHQSPTQNHSSTIPDQMSYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00391429;
- 80% Identity
- iTF_01235110;