Pfus001113.1
Basic Information
- Insect
- Polistes fuscatus
- Gene Symbol
- -
- Assembly
- GCA_010416935.1
- Location
- QUOI01000014.1:2104334-2110436[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.7 7.7e+02 0.6 0.1 2 13 100 111 99 112 0.88 2 17 0.12 9.2 6.7 4.1 1 23 154 177 154 177 0.95 3 17 4 3.2e+02 1.8 0.4 1 23 553 576 553 576 0.91 4 17 5.5 4.4e+02 1.4 3.1 3 23 575 602 573 602 0.84 5 17 0.11 8.5 6.8 3.5 2 23 608 629 607 629 0.97 6 17 0.0028 0.22 11.8 0.8 1 22 942 963 942 963 0.96 7 17 0.028 2.2 8.6 2.3 2 23 971 993 971 993 0.94 8 17 0.012 0.95 9.8 4.0 3 23 1005 1026 1003 1026 0.91 9 17 0.073 5.8 7.3 0.1 3 21 1056 1074 1054 1075 0.92 10 17 0.095 7.5 6.9 5.3 1 23 1082 1105 1082 1106 0.92 11 17 0.034 2.7 8.4 0.9 1 23 1116 1139 1116 1139 0.95 12 17 0.041 3.3 8.1 0.2 1 20 1161 1180 1161 1182 0.94 13 17 0.075 5.9 7.3 3.7 1 23 1189 1212 1189 1212 0.96 14 17 0.28 22 5.5 2.0 1 23 1221 1244 1221 1244 0.92 15 17 0.03 2.4 8.5 0.1 1 20 1299 1318 1299 1320 0.94 16 17 0.00016 0.012 15.7 1.0 1 23 1327 1349 1327 1349 0.96 17 17 3.8 3e+02 1.9 0.7 1 23 1359 1382 1359 1382 0.88
Sequence Information
- Coding Sequence
- ATGATTAAACAAGAGCCATGTGATACGAACAACGTAAAGATGAATGAAAATTGTGTATCGACTAATATACAGTGCAAATATATCGACCTAACCAAGGATAATAGCAGTCAGCAAGAAGATGTTGTTTCTTCTACAACTGAAAATCTCAGTTACAATGTAATAACTAGTCAAATCAGAAAGGAACCTATTTTAATGGGTAATgcaataattgaaaatgttgGGACGTTAGAAAAAAGtgacaatattaataaatttaaactacAAAAAAATGCAGCACAGTTACAGAATACGACAACTCAATGTAGCATATGTTTGTTGTCGTTCCCCAGTCAGcaaattttgaattttcataATAGTTATTATGAAAgtactaatatttattgttgtcACAGTTGTGCTTCCAAATCTTGTTATCACATTAAAGAGCAAAATAGTAAGAAGACGTATTACTATAACATGTATGAATGCGATATTTGTAAAGACCGGTTTAAGCATAAGGAACGTATGCAAGCTCATTTACTCCATTaccacaaaaaagaaataaataggatGAATGTcgtagaaaatgataaaattatgattaatcATTCGACTGTTTCACAATCCATTACCCCAATCAAGGATAAATTGATACAACAAAAAAGGGAcaacgaaagagaaacagaaggAACGGTTAATGAAAACGTACACAACTCTGAAGCAAGTATGTGTGAATTATTACCAATGATTaaacaagagaaagaatggGGAGATGATCAAGAAAGTGAATTATCGATGGATCAACTAGTTTCAATTGTATTTCAAACTAAaaacaaaccaaaagaaaataaaatgcatgATAAACAGTTTACTCAAGTACACGTTGACATGAATACGATGGAAGCTCTTTTAAAAGTTTCGAATAACAACTTCCTTGACAAATCTTTGCCGtatgatgataatattaataataatactaatagtaatactaatagtaataataatagcagtAAAAATAGCagtaataatagaattattagtAAATCTTATGCATTACGTTCCttaaataattcgaaagaGCTTAATAATAGCATAACACCACCTACAGTTGtacagaaaaataatcaaagcgATGATAAACTAAGTAAACATTTAAATGCgtgtaaaaaatgtataattccTCTGGTAAAATGTGATAGTATTATTAATGTGACAACATCAACTAAATTGAATTCGaactttttacaatttaatagaCTATCTTCTCAGATTTCACGACCATCACTTAATCATAAGTCTATTAACTATAAATCAACacttagaaaaagaaagagtaccATGTCTTCTTCTATCGAAGAACCGCCCATAAAAATGACTCGATCGCGAAGTATGAATAGTCCATTAAAATTACCTACAAGCAATGATATTATACAtcataggaaaaaaagaatgtttggTCAAAAATTGGAAAGATCTCtgagaaaagataatattaagaattccAAAGTTACACTGACTGTTAAGAAACTCAATACTGATGTATTACGAAACAAAAAACTTGCAATTAACAATGTTCAATTAAAGGAAGTTAAGATATCTTTGATAAAGTTACCGGagattaaaaaggaaataatcgaGTCGGCAAATATTGGAAACGAAATTACTCCTACAGAAACTTTTCTTTgtcaaatttgtaatttaccGTTGGCCTCGGAGGAAATTCTGAAAGATCATGTAAAGAAATGTCACACGGCGTATATTTCAACTATTTGTAAAGCGAAGTATACCTCGAAACGACGTTTATTGGACcattatttaaaagaacatGACACGAGGGCTAGCAAATGCTGCGTTTGTCAACAATTCTTAAACAACCGATTTTTACTAAGACAACATATGCTTTTACATTGTATCAAAATAACTTTATCGAAAAAAGATCGTCCTGTTtcaaataagaattttaaatgtagtttatttaaaaataataacttcaaaCGTACTGGTTTTAAAATAATGCTGCGAACGCCAAAACCGTCAAAGAAATGTGGAAAGATTAATCATTATGgtaataaatatgttaataaaccAACAAAACGTCAgaagatttataataatgataagaataatgtagagaaaaaaacgaaatatcaaGAGATCGATAAtggtgaaaataataaaaaaaaaacaatagaacctgaagaaattaataatgataagaataatcaagaaaaaacaatagaacctgaagaaattaataatgataagaataatctagaaaaaacaacagaacctgaagaaattaataatgataagaataataaagaaaaaacaatagaacctgaagaaattaataatgataagaataataaagaaaaaacaacagaacctgaagaaattaataatgataagaaTAATCTAGAAAAATCAATAGAATTTCAAAAGGTTGATGATAATGACGATCATGGCGATTGTCTAGAAATATTAGAGGATAATTTTAACGTAAATAACGCTGAGAATATGACGAAACAAGTTAGTAAAAGCAAAGAGAATGATGATGCTGGtgttattgaaaaaagaaatgaatcagAGACTGATACGATACTCTGTATTGACTTAACAGAACCATCAGAAAGTGATAATACTGAAGTTCCTTGTTCTAGTAATATGATAAAAGAACCAATGATGGAACCTTTGCAAGTTGTTAACTCAACATTTATCATTTGTAATCCTAACGAGAATGCGCAAACAAAATTAAcattagatattaataattcaatgcaACCGAGTGTTAACGATAGTAACGAGCCTATAGaagtaatagaaattatagcagagaagaaaaaatatccatGTTCTATTTGCAAACAACAGTTTCAAAAGCTTGAAAGTTTGCAACAACACAAACGTACCTACGATCCGTCGCCAAATAATTATTGTGGCCACTGTAAGctatatttttcgaataaatacatattgaaAACTCACATGAATGCTACTCACAATATAAGTATTTGTAATTCATATAAAATGCATTGCCAATTTTGTAATCAAGGTTTCCGTACTCAGAACAATCTTAGAATACACGAGTTGCATTATCATACAACAGCAGTAActgtaaacaataaaaaaatcacgGATTTCTTGCAAATTTCGGACagagaaaataatcgatcgaCAAAAACGATTTGCAAGGTTTGTGGCCTATTCTTTGACACTGTCGAAAGTTATCAGTtacattatatgtatttttataaagatcATATATTTTCCTGTAAATTATGTGACAAAGTATTTCGCGGATTATACATGATGTACCATCACAACAAACTTTTCCATCATTCTGGAGATACTTTAGTATCTTACAAATACAAATGCATATATTGTCACGAAGGATTTGTTGCCGAGGTACAATTGCAAGCTCACATGTCACACGTGCATCCGAACAAACAAGTAAACGAATCACCGTTAAATTCTATAAACTATAATCAAACTAATAAATCTTATGTATGTTCCAAATGTAACATGGAATTTTTTAGCGTTAACGAACTCTTGATACACATTGAACATTTTTCGAATCATGGCAGTTATAGATGTTCCAAATGTTCTCGAAAATGTTATAACTTATCGATACTCAACGATCATATGAATCTGACTCACTTCCATGACGGGTTAACGAAAAGATACATGTGCGATATTTGTGGTGAAGTTTTAATATCCAAAACTTTTCTCTTGTGTCATCAGAAACACGTTCACGGTGATTTACAAAATGAACAAATCGTATCCACTAACAAAAATCCTACAACTGATTTACATATAGACGAGGTCACTAATGACAATGTATTACAAAATGATAATGAAGCGGTAGTACTTATGAATCCTCCTAATTCTTCTCCGATCgttgtaaaaaaatacaatttttattgttcgaTATGTCCCGTTAAGTttgataaagaaatttatttgaaggAACATTTGATCGAATATTTGGATTACGGCGATTATCAGTGCAACGAGTGTCTAAGGCGATTCGCAAATTCCGATTTCTTGAAGAAACACGctgaaaatcatttgaaacCGGGTATGGCTAAGACGAAATATTATTGCATTCTTTGCAACGAAGTTTGTAAATCTCCTATGGTCCTCGAATCTCACGTTGCTCATTTGCACGgacgtattatttttaaagatgaTCCGCCGAAGAATgtttaa
- Protein Sequence
- MIKQEPCDTNNVKMNENCVSTNIQCKYIDLTKDNSSQQEDVVSSTTENLSYNVITSQIRKEPILMGNAIIENVGTLEKSDNINKFKLQKNAAQLQNTTTQCSICLLSFPSQQILNFHNSYYESTNIYCCHSCASKSCYHIKEQNSKKTYYYNMYECDICKDRFKHKERMQAHLLHYHKKEINRMNVVENDKIMINHSTVSQSITPIKDKLIQQKRDNERETEGTVNENVHNSEASMCELLPMIKQEKEWGDDQESELSMDQLVSIVFQTKNKPKENKMHDKQFTQVHVDMNTMEALLKVSNNNFLDKSLPYDDNINNNTNSNTNSNNNSSKNSSNNRIISKSYALRSLNNSKELNNSITPPTVVQKNNQSDDKLSKHLNACKKCIIPLVKCDSIINVTTSTKLNSNFLQFNRLSSQISRPSLNHKSINYKSTLRKRKSTMSSSIEEPPIKMTRSRSMNSPLKLPTSNDIIHHRKKRMFGQKLERSLRKDNIKNSKVTLTVKKLNTDVLRNKKLAINNVQLKEVKISLIKLPEIKKEIIESANIGNEITPTETFLCQICNLPLASEEILKDHVKKCHTAYISTICKAKYTSKRRLLDHYLKEHDTRASKCCVCQQFLNNRFLLRQHMLLHCIKITLSKKDRPVSNKNFKCSLFKNNNFKRTGFKIMLRTPKPSKKCGKINHYGNKYVNKPTKRQKIYNNDKNNVEKKTKYQEIDNGENNKKKTIEPEEINNDKNNQEKTIEPEEINNDKNNLEKTTEPEEINNDKNNKEKTIEPEEINNDKNNKEKTTEPEEINNDKNNLEKSIEFQKVDDNDDHGDCLEILEDNFNVNNAENMTKQVSKSKENDDAGVIEKRNESETDTILCIDLTEPSESDNTEVPCSSNMIKEPMMEPLQVVNSTFIICNPNENAQTKLTLDINNSMQPSVNDSNEPIEVIEIIAEKKKYPCSICKQQFQKLESLQQHKRTYDPSPNNYCGHCKLYFSNKYILKTHMNATHNISICNSYKMHCQFCNQGFRTQNNLRIHELHYHTTAVTVNNKKITDFLQISDRENNRSTKTICKVCGLFFDTVESYQLHYMYFYKDHIFSCKLCDKVFRGLYMMYHHNKLFHHSGDTLVSYKYKCIYCHEGFVAEVQLQAHMSHVHPNKQVNESPLNSINYNQTNKSYVCSKCNMEFFSVNELLIHIEHFSNHGSYRCSKCSRKCYNLSILNDHMNLTHFHDGLTKRYMCDICGEVLISKTFLLCHQKHVHGDLQNEQIVSTNKNPTTDLHIDEVTNDNVLQNDNEAVVLMNPPNSSPIVVKKYNFYCSICPVKFDKEIYLKEHLIEYLDYGDYQCNECLRRFANSDFLKKHAENHLKPGMAKTKYYCILCNEVCKSPMVLESHVAHLHGRIIFKDDPPKNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01235295;
- 90% Identity
- iTF_01235295;
- 80% Identity
- -