Basic Information

Insect: Polistes fuscatus
Gene Symbol: gtf3a
Assembly: GCA_010416935.1
Location: QUOI01000014.1:5140967-5147696[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.3e-05 0.0018 18.4 0.1 2 23 748 769 747 769 0.97

2 17 5 3.9e+02 1.5 0.5 1 19 775 793 775 795 0.92

3 17 1 81 3.7 0.8 3 23 803 823 802 823 0.97

4 17 0.00059 0.047 13.9 1.8 3 23 832 853 831 853 0.98

5 17 0.012 0.99 9.7 3.0 1 23 860 883 860 883 0.95

6 17 7.5e-05 0.0059 16.7 0.7 1 23 889 912 889 912 0.94

7 17 0.51 40 4.7 0.9 2 23 920 940 920 940 0.94

8 17 1.1e-07 8.7e-06 25.6 2.1 2 23 946 967 945 967 0.97

9 17 1.8e-06 0.00014 21.8 0.2 1 23 973 995 973 995 0.99

10 17 0.00044 0.035 14.3 2.4 2 23 1007 1029 1006 1029 0.95

11 17 0.0014 0.11 12.7 1.6 1 23 1035 1058 1035 1058 0.96

12 17 0.0095 0.75 10.1 3.0 2 23 1079 1101 1078 1101 0.95

13 17 0.00017 0.013 15.6 1.2 2 23 1108 1130 1107 1130 0.96

14 17 4.5e-05 0.0036 17.4 1.0 3 23 1139 1159 1137 1159 0.96

15 17 0.00095 0.075 13.2 2.3 1 23 1165 1188 1165 1188 0.96

16 17 1.4 1.1e+02 3.3 3.4 2 23 1195 1216 1194 1216 0.96

17 17 0.0046 0.36 11.1 2.4 1 23 1222 1244 1222 1244 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.3e-05	0.0018	18.4	0.1	2	23	748	769	747	769	0.97
2	17	5	3.9e+02	1.5	0.5	1	19	775	793	775	795	0.92
3	17	1	81	3.7	0.8	3	23	803	823	802	823	0.97
4	17	0.00059	0.047	13.9	1.8	3	23	832	853	831	853	0.98
5	17	0.012	0.99	9.7	3.0	1	23	860	883	860	883	0.95
6	17	7.5e-05	0.0059	16.7	0.7	1	23	889	912	889	912	0.94
7	17	0.51	40	4.7	0.9	2	23	920	940	920	940	0.94
8	17	1.1e-07	8.7e-06	25.6	2.1	2	23	946	967	945	967	0.97
9	17	1.8e-06	0.00014	21.8	0.2	1	23	973	995	973	995	0.99
10	17	0.00044	0.035	14.3	2.4	2	23	1007	1029	1006	1029	0.95
11	17	0.0014	0.11	12.7	1.6	1	23	1035	1058	1035	1058	0.96
12	17	0.0095	0.75	10.1	3.0	2	23	1079	1101	1078	1101	0.95
13	17	0.00017	0.013	15.6	1.2	2	23	1108	1130	1107	1130	0.96
14	17	4.5e-05	0.0036	17.4	1.0	3	23	1139	1159	1137	1159	0.96
15	17	0.00095	0.075	13.2	2.3	1	23	1165	1188	1165	1188	0.96
16	17	1.4	1.1e+02	3.3	3.4	2	23	1195	1216	1194	1216	0.96
17	17	0.0046	0.36	11.1	2.4	1	23	1222	1244	1222	1244	0.98

Sequence Information

Coding Sequence: ATGCAGAATTCAACTAAGCTTAACAGAGATCACGATTATGGAGAATTAATGACAgaaaatcataattatatgaatACCAGTCCTCAGAAAGATatgttggaaaataatttattaaaaaccgTTTTGAAACCTATGAAGGTATCTTGTTTGACAGTAAATAAAGATACCTTAGGTGGACAAGTTAAGGATATAaatgagttaaaaaaaataacacctCGTGTAAAGCTATTGGCTCATGATGTAAATAGTTTGAAGGAATTAACTAAAATTTCTTtgcaaaataaatcattagaaTCAGACAAAATTCAAATGTTTGAAAATACTAAGcaagaattaaaaaagtactGTCGAACCTGTGCTGGTTTGAAGTTTCCTTTGGTCGATATCTTCAGTGAAAAAGGTATTCAAATGAGGCTAAGTCAACAGATCAAACatttagaagaaataaattctcaCGACAGTTTATCTACTCAAATGTGTATGGATTGTATTTGCGATTTGAAAATGAGTTATAAGTTTTATATGCAAATTAAAAAAGCtgaaattaagttaaaatcCCTTTATGTTACAATAACCGACACAGTCGTACGTAACATAGAAGCAGATAAAATACAATCTCTAACTAACAGTCAAAAGCTGGTAGAAGAAATTGATGATTCCTCTATGGTGCCCATATCAACAAGCACCGACAATGATGAATTTGTTCCAAAAATATCTgctatttattctttaaaagaTGTGAAATCACCACCTCCGGAAAGAGAGGCAAAAAATAATTCTGATGTAACATGTACAATTGAGCCTGAAATTTTTGAAGATGTTGTAAATCAACATCAAAGCGATGATAATGAATCTATCGAAGAATTCGATCCAGATGATCCACCATTTCAACCCGATAGTTCAGATGCTGCAGAATCTGATGATGAAATTGAAAGTAGTCACACGGATAGAAGACGAAATACGTCTAAAAAGGATAATATAAGTAAAGCAAATAATCAATCTTTTCTGTTACAAAATTTGTCGGGTAGTAATTTAATGCAGAATCAAGATGATGCAAATCAAGATGATGCAAATCAAGATTCTAATCAAactgtatataaatatgatacgGCATTAAAAGCTTATGTTAAATTAGATACTCCAcaagataatttaaattccaaatttcaaattaatcagaagattgatataaaaaataatgaatttggGAAAGATACTCCAAAACAACCAAATATATTAAAGCGCAGGCTTTTGCAGCAAACAAAAAAGGATAATTTAGGAAATAATGATGAGTCCAAATGTTCTACTATATCTGATATTTCTGAATATCCGAAAGATTCGAAAATTCCAAAATTAGATATGCAAAACCCTTTAAACATTAACGATACCCAAGAAGATGGAATTATGTACGTCACTGTGAAAGGTTCTAAaccgaatgaaatattattagtaaAGGTTAAAAAAATGGATAAACCGCTTGAAAAAAAGGACGAGAAAAATATGAGTAAAAGGAaatcatttgatttaaaacCAGTTGGTAAAATTTTGAAGAGATATGAAGCTTTAgcgacaaaagaaaagaatttatttacagAACGTACTAAGAAGTTGGATAAGAGAGAACAGATAATAGAAGAGCAAATagaagaatataagaaaaaacgtgATAAAATTCTAGGTAGTCAACCAAATTTACCAACTAAAAACGAAGATACTCAGAATCGATTTGTTAAACGAGTAGAAAGTTCTGACGATCAAAAAGCGCATATATACGAAGAAAGTAATTCCAATTTAAAGGTAGAATCTGACGTTGATAGTAGTACTATGAATAGTGTTAttataagagaagagaatgtTTCAGATGTTTCAGATTTTCAACAGGATCAGTCAGTTTCAGAGAAGGCATATGAGAACACAGAAGAGTACTTATCACGTTTAGCTAAACTTAAATTAAAATGGGAAGAggcgaaaaaaaagaaagaatacttACAAAAAGAACTTGATCAGTCTTACACTGAGGGAAACATGGAAAAATTATCACGAATtctaggagagaaagaaaaaaacttactagaatttcaagattatttaaagcaaagaaaaatagttattACCAGATTAAAAGATGAAGACATCATTTCCCTTTACGAAGATAGAAATAACACGTCTCTTCAAAAAAGTTTACCCGACTTGATCGATGAAACAACACCAGCAGATTATATACCAgaggaaaattatttagagTGTGATTATTGTCctgaaacattttcttctaaaGAAGTACTTGAGGATCATATAAAAATGcacgattttaaaataatgcatTACTGCGAAGATTGCATGGAGGAATTTCCTACaaacaaagcaaaaaaaaatcataatgtaatgtgttataaaaaattattatgtaaatattgtgatataatattagattcGAAAGGCAAAAAGAGGCAGCATGAACAGAAACATTGTGATAATATGTTTGGCCAATTGTGCGAGTTTTGTGgtgaaaaattcaaacatCAGGGGACCCTCGATCAACATGTTAAAACGCAACATATGAACTgggaaaaaatttttcaatgtaCTAAATGTCCGAAAAAATTTGcgttcaaacaaaagttgagttttcatttaaaatcagTCCACACAACGTTGAGAGCTTATTTGTGTGAAGATTGTGGGGCAGACTTTAAAAATCCTGCCAGTCTGAGACATCATCGTATTCGCAAACACCAACCTGTAGGGAACAAAAGAGAATGTCCAGTCTGTCATAAATTAGTACCATTTTATAGTCTTTCTAAACATATGTATACTCATAAAGCCTATACTATACAATGTCCACATTGTGATAAGATGTTTAAAAATAGTTCAACATTAAAACAACATGTAAGAATACATGAAGATCAACGACAATATCGCTGTGATACTTGCGGTGTTGGATTTAATAGGAGGGATGGATTAAGACTTCACATGAGAGTTCATGAAAAATCTGATAGCAGAGGATTAAAAGAATGCTCATGTCAAGTATGTGGTGAGAAATTCCCAAATCATTCTACACTAGTTATACATAGAAATCGCGTACACAAAGATGGAAGGCAATATACATGTCATATATGCAATAGATCTATGATTTCAGCAAGATCATTAGAATGGCATATGTCTCATATACATAACGAATCACTTCCTGGCATTGTAAAAGAAAGTGTAGATGGCGCACAAGAAAAAAGAGTTTCTTGTTACCATTGCAATAAAACTTTCAAAACAGAAATGATTTTAAGAacacatattaaaaatactcatATGGAGAAAGACCCTATGAAGTGTTTGGATTGCGACATGACATTTACTTCTGAAGTTAGATTGAGGCATCATATGATGGTACTTCATAATAGGCTGGAAGGCACATTAGCATGTCCTCATTGTCCAAAACGATTTGTAAATCAGCTTAGGTTAAAAACTCATATGATATCTCATTCTGAAGAAAGACCATATACATGTGAAATATGTGGATTTAATTTAAAGACTAAGATACAACTAATCAAGCATCATCAAAACAGACATAGCGATGAAAGACCTTTACAATGTAGATTCTGTCCATGGAGGTGTAAACAAGTAAGCGCACTTGTTTGTCATGAAAGAACTCATACAAATGAACGACCTTATTCGTGTAGTGTTTGTACAcaacgttttaaatatttgggTGATAAGAATAAACATGAAAGGCGTCATGAAAGTTTAGGAGGATCTGGATTTAAACGAATAGTACCTGGCAGAAATATTAAGCATTCTAAAGTTCAAGGAGAAACTTCTGGTTctgaacaagaacaagaagaattaACGCATGTAGATTCGCAGCTTACAGAAAACCAATACGAGGAACAAACGTGTCAACCgtttgaaacaaaatttatcaaaGAAGAAATCGTTAAATTTGAAGAACCTGAAATTGCAGAAGAATATGAGCAAGTCTATGAACAGGATTATGAAGAAACATCGAGAGAAGCTTCTGAAGCTGCCGAAGTTATTATGAACATGGAAGACACCACTGTATACACGGAAGAAGTAACTGCAGACAACATTGAGACAGCAGAAATAATGGCAAACGAAATGATGACTAACGAGATTTTACAGAGTGGAACTGTAGTACATTTGCAACAACAAGATGACAATGGAAAAATTCAAGTTATTCCTGTTATGCTATCTTTGCCTGATTTATCTGACACAAATACGGAAGTCAATTTAGCAACAGCATCAATAATGTATAacaattaa
Protein Sequence: MQNSTKLNRDHDYGELMTENHNYMNTSPQKDMLENNLLKTVLKPMKVSCLTVNKDTLGGQVKDINELKKITPRVKLLAHDVNSLKELTKISLQNKSLESDKIQMFENTKQELKKYCRTCAGLKFPLVDIFSEKGIQMRLSQQIKHLEEINSHDSLSTQMCMDCICDLKMSYKFYMQIKKAEIKLKSLYVTITDTVVRNIEADKIQSLTNSQKLVEEIDDSSMVPISTSTDNDEFVPKISAIYSLKDVKSPPPEREAKNNSDVTCTIEPEIFEDVVNQHQSDDNESIEEFDPDDPPFQPDSSDAAESDDEIESSHTDRRRNTSKKDNISKANNQSFLLQNLSGSNLMQNQDDANQDDANQDSNQTVYKYDTALKAYVKLDTPQDNLNSKFQINQKIDIKNNEFGKDTPKQPNILKRRLLQQTKKDNLGNNDESKCSTISDISEYPKDSKIPKLDMQNPLNINDTQEDGIMYVTVKGSKPNEILLVKVKKMDKPLEKKDEKNMSKRKSFDLKPVGKILKRYEALATKEKNLFTERTKKLDKREQIIEEQIEEYKKKRDKILGSQPNLPTKNEDTQNRFVKRVESSDDQKAHIYEESNSNLKVESDVDSSTMNSVIIREENVSDVSDFQQDQSVSEKAYENTEEYLSRLAKLKLKWEEAKKKKEYLQKELDQSYTEGNMEKLSRILGEKEKNLLEFQDYLKQRKIVITRLKDEDIISLYEDRNNTSLQKSLPDLIDETTPADYIPEENYLECDYCPETFSSKEVLEDHIKMHDFKIMHYCEDCMEEFPTNKAKKNHNVMCYKKLLCKYCDIILDSKGKKRQHEQKHCDNMFGQLCEFCGEKFKHQGTLDQHVKTQHMNWEKIFQCTKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMYTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKSDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISARSLEWHMSHIHNESLPGIVKESVDGAQEKRVSCYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCDMTFTSEVRLRHHMMVLHNRLEGTLACPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRFCPWRCKQVSALVCHERTHTNERPYSCSVCTQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNIKHSKVQGETSGSEQEQEELTHVDSQLTENQYEEQTCQPFETKFIKEEIVKFEEPEIAEEYEQVYEQDYEETSREASEAAEVIMNMEDTTVYTEEVTADNIETAEIMANEMMTNEILQSGTVVHLQQQDDNGKIQVIPVMLSLPDLSDTNTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01512335;
90% Identity: iTF_01233154;
80% Identity: -