Pfus011353.1
Basic Information
- Insect
- Polistes fuscatus
- Gene Symbol
- br
- Assembly
- GCA_010416935.1
- Location
- QUOI01000008.1:275948-278075[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.5e-07 0.0013 18.1 0.0 2 39 200 236 199 242 0.85 2 4 3.8e-12 5.1e-09 35.4 0.0 4 39 252 286 250 292 0.91 3 4 0.068 90 2.6 0.0 21 34 320 333 306 338 0.80 4 4 2.9e-13 3.8e-10 39.0 0.1 4 39 364 399 361 404 0.93
Sequence Information
- Coding Sequence
- ATGTGCGAACAATCTGctcaaaatgaaattaaccAAAGTTATTGTTTCAAATGGAATGATTATCAAAATCATTTATCCGATGTAATTCGTCAACTTTTAGAAGATGATTGTATGGTAGATGTTACACTTTCTGCAGCAGGAGAACGTATTCATGCACACCGTATTGTTCTATCTGCTTGCAGTACATTATTTCAAGAAGTTCTGAGTCAAGTAAACGAAGACCATCCTACCATAATATTAAGCGATATATCTGCTCAggatataaaatcaattattgaaTTTACCTATCATGGAGAAGTACGTATTCcagtagaaaatattaatagtttGTTGGATGCAGCACGATCTTTAAGAATATGTGGTCTTAATGagATTGATGATCTTGATGAAAATGATACCATTATTGATAGCAAAGATGCGGCTGAAGATAATATTGATCATTTACCAGAAATAAGTGAAACGGATGAAATTGagataaatacattaaataataaatgcgaATTAGGAAATTTAAAGACTGAAGACAAGACAACAGAAAACTCTctcttaaataaaagaagaaaaagaaaaagagatgtgatgaaaagagaatataGTGATGATATGTTAGCATCGGCTATTAATGATTTAAGGCTTGGTCAAACTTTAATAGAAGCGGCTACCAAACATAAAATACCACGTTCTACATTATACATGCGTGCTAAAGGATTGggtatacatttaaatgcaTCTAGGAATGAGTATCCTGCCGAATGTATGCAAGCGGCAATAGATACTGTGATCGctGGTACTAGTCTACAACAAGCATCAGAAATATTCAGTATTCCTAAAACCGTATTATGGAGACGCATACAAAAGCAAGGATATCAAATTCTACGCTCCGAAATGAAAAGATCTTATGGATCAGATAAACGTGAAGCAGCTGTTAAGGCTttagaaagaggagaaaattTAACTAAAGTTGCTCTTGAATTTCAgaTACCTAAGACAACATTATTTAGAGATAAAGCGAGATTAGTAGACGAAGGGAAATTACCACTTTCATTTTGGAAAAAACGTAAGACAGAAAATGAGGAGTTAAAAAAGTCGAGATTAGAAGAAGCCGTAGCTGCTTGTAAAGGAGGGAAAATGTCTCAAGCGGCAGCATCCATGGCTTATGATATACCAAAGACTACGATATGGAGGCGGTTGCAACAGGATAGTAAGAAGTCGGAaagattaacaaataaaaaaaaatcgcagAGAAGTATTGAGACAACATCGAGCACAATTGATAAACCAAAGCAAGAAGCATCCGATTTTACGTATTGCGaggtCGCGTCAGAAATTCCGATAACATATATAGATGAAAATAGTTTACCGGAGGATtccgttattattttaacgacAGAGGATATGGATGGTCTTAATTTAGAAGAGGGAAgacaaataattgtaaattctGTATCAAGTCATGAATATGTTCCATGTAATctaaatatagaagaaaattctaaTTACACACAACCAGAAAGTTAG
- Protein Sequence
- MCEQSAQNEINQSYCFKWNDYQNHLSDVIRQLLEDDCMVDVTLSAAGERIHAHRIVLSACSTLFQEVLSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRIPVENINSLLDAARSLRICGLNEIDDLDENDTIIDSKDAAEDNIDHLPEISETDEIEINTLNNKCELGNLKTEDKTTENSLLNKRRKRKRDVMKREYSDDMLASAINDLRLGQTLIEAATKHKIPRSTLYMRAKGLGIHLNASRNEYPAECMQAAIDTVIAGTSLQQASEIFSIPKTVLWRRIQKQGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFQIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMAYDIPKTTIWRRLQQDSKKSERLTNKKKSQRSIETTSSTIDKPKQEASDFTYCEVASEIPITYIDENSLPEDSVIILTTEDMDGLNLEEGRQIIVNSVSSHEYVPCNLNIEENSNYTQPES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_01233765;
- 80% Identity
- iTF_01233765;