Pdor003567.1
Basic Information
- Insect
- Polistes dorsalis
- Gene Symbol
- -
- Assembly
- GCA_010416905.1
- Location
- QUOG01000024.1:1662129-1668745[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.1 2.5e+02 1.6 0.3 41 48 17 24 1 35 0.45 2 4 4e-14 9.7e-11 41.4 7.0 5 69 107 170 103 171 0.94 3 4 4.6e-13 1.1e-09 38.0 4.5 4 69 248 313 245 314 0.94 4 4 1.5 3.6e+03 -2.1 0.8 8 19 430 441 425 449 0.73
Sequence Information
- Coding Sequence
- ATGATAACATTTCTAcatatttgtttgttaatatatttcaagcCATACATAGCCACATGGTGTCCCGTATGCGATAAACGTGTTAGCGATAAAGGAAAAGACACTGAAAAACTTTTAAAACACGTTAGAAGAAATCATTGTAAAATACCTTTATCCCAACGATCGGATAATAACGATAGTcaaGATTATTCCgaacaaatattgaaattaccAAGCTGCACTAAACGAACTACCGCTACTacgatttctaataaaaagaaaaaggataatacAAGAATTTATTCAACCCGtgtCGACACATGGAGGTCACACGACGAGAAAAAGATTTGTCCCCAATGCAAAAAGGTTGCCGTACCAACACTGCACACGCGCAGACACAAATTGACGACGTCTCATATAACAGCGATCTGTCTTCTAGGATGTTGgccattttgttttataccgTTAATGAAACGCTCGAAGAAGATTCGCATGATCTGTCCTGCCTGTGGATACGTTTACGGGACTTAcgagtataaaaataacagcCTGGCTCCTTCTTGTCAACCGGATTCCGAGAATTCGCAAaaAGCTCACATTTATATGCAACAGAAAGTAGAATGCGATCGGTCAGTAAACAATGCCAAAAAACGTTCGTGGATCTCTGCAAcgaaattatacaaaaatatttggcCCGTTggaaacgataaaagaaaaagaaacgtttattCTACCAGAgTTGAAACTTGGAAGTATCACAACGAGAGTTTATTATGCCCAGTATGTAACGAACACGTAGTACCAATAATATTcacaaaaagatataaatttaccAGTTCGAGATTCGGAGCTACTTGTTTGTTAGGATGTTGGCCATTGTGTTTGATGCCTCTGATGTTGAGTCAGGAGAGACAAGCTAGGCTTGTGTGTCCGTTTTGCGGACATAATTACGGAAATTACGTAAAGTCGGAAAATAAAAGGCACGATTCAAGCTTTTGGCATACTCGTGGTGGTGGACAACAACGATTAGTCCAAATTATGAACTCCAAGTTGAATCGTTCCGATAAACAGGAATCCGAACTTCAACCTAATTCACAATTGGCTGTATTAACTCGTCAAGAATTATGGGAGGTGCAGGACGCTTCTCAGCAAACAACAGACAACGccaaagaaaaggaaaaggaagttgagatagaagaggaaaaagaagaagatgaagaagaagaagaagaagaaggaagagatgCAAGTGTTCCAAAAGTTTTCCAGAATCTTTCCAAAGAGACAATGTcccaacgttcggaaggttgCACCTTTTGTTCGAGCCAGGTCAAACCAAATCGTTGCTACGAGACACAACACTTTGAATTATCTGACCTAGATTATCATTCCGATTGGTCTAcctataataatcatcattataatCATCATCCTTACTCGGTTTATCAAAAAACTCGATTGTACGATCAAATTTACAACTGA
- Protein Sequence
- MITFLHICLLIYFKPYIATWCPVCDKRVSDKGKDTEKLLKHVRRNHCKIPLSQRSDNNDSQDYSEQILKLPSCTKRTTATTISNKKKKDNTRIYSTRVDTWRSHDEKKICPQCKKVAVPTLHTRRHKLTTSHITAICLLGCWPFCFIPLMKRSKKIRMICPACGYVYGTYEYKNNSLAPSCQPDSENSQKAHIYMQQKVECDRSVNNAKKRSWISATKLYKNIWPVGNDKRKRNVYSTRVETWKYHNESLLCPVCNEHVVPIIFTKRYKFTSSRFGATCLLGCWPLCLMPLMLSQERQARLVCPFCGHNYGNYVKSENKRHDSSFWHTRGGGQQRLVQIMNSKLNRSDKQESELQPNSQLAVLTRQELWEVQDASQQTTDNAKEKEKEVEIEEEKEEDEEEEEEEGRDASVPKVFQNLSKETMSQRSEGCTFCSSQVKPNRCYETQHFELSDLDYHSDWSTYNNHHYNHHPYSVYQKTRLYDQIYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -