Pdor010127.1
Basic Information
- Insect
- Polistes dorsalis
- Gene Symbol
- -
- Assembly
- GCA_010416905.1
- Location
- QUOG01000016.1:3087164-3092285[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0077 0.54 10.5 3.2 1 23 204 227 204 227 0.96 2 15 1.4 97 3.4 0.7 1 23 628 651 628 651 0.93 3 15 7.2 5.1e+02 1.2 3.2 3 23 650 677 649 677 0.83 4 15 0.16 11 6.4 3.5 2 23 683 704 682 704 0.97 5 15 0.0032 0.23 11.7 0.8 1 22 973 994 973 994 0.96 6 15 0.024 1.7 9.0 2.3 2 23 1002 1024 1002 1024 0.94 7 15 0.014 0.97 9.7 4.0 3 23 1036 1057 1034 1057 0.91 8 15 0.083 5.8 7.3 0.1 3 21 1087 1105 1085 1106 0.92 9 15 0.016 1.1 9.5 3.7 1 23 1113 1136 1113 1137 0.93 10 15 0.038 2.7 8.3 0.9 1 23 1147 1170 1147 1170 0.95 11 15 0.042 3 8.2 0.1 1 20 1192 1211 1192 1213 0.94 12 15 0.086 6 7.2 3.7 1 23 1220 1243 1220 1243 0.96 13 15 0.32 22 5.4 2.0 1 23 1252 1275 1252 1275 0.92 14 15 0.035 2.4 8.5 0.1 1 20 1330 1349 1330 1351 0.94 15 15 0.00034 0.024 14.8 2.0 1 23 1358 1380 1358 1380 0.98
Sequence Information
- Coding Sequence
- atgGCACGAGTTCGTCAGTACTCAAGACCATTGGATCCTATAACTgctaaatttgatttttcacaAATTTCTACATTTAACAGAGAAAACATCATGATTAAACAAGAGCCGTGTGATACGAACAACGTAAAGATGAATGAAAATTGTGTATCGACTAATATACAGTGCAAATATATCGACCTAACCAAGGATAATAGCAGTCAGCAAGAAAATGTTGTTTCTTCTACAGCTGAAAATCTCAGTAACAATGTAATAACTAGTCAAATCAGAAAGGAACCTATTTTAATGGGTAATgcaataattgaaaataataaacatctACAGCAAATGGAACGTTCGCTTGTTATAGATGAAAGTAATGAAAATGTTGGGACGTTAGAAAAAagtgataatattaataaatttaaactacAAAAAAATGCAGCACAGTTACAGAATACGACAACTCAATGTAGCATGTGTTTGTTGTCGTTCCCCAGTCAGcaaattttgaattttcataATAGTTATTATGAAAGTactaatctttatttttgtcacAGTTGTGCTTCCAAATCTTGTTATCacattaaagagaaaaatagtaaGAAGACGTATTACTATAACATGTATGAATGCGATATTTGTAAAGACCGCTTTAAGTATAAGAAACATATGCAAGCTCATTTACTCAATTaccacaaaaaagaaataaatagcaTGAATGTcgtagaaaatgataaaattatgattaatcaTTCGACTGTTTCACAATCCATTACCCCAATCAAGGATAAATTGATACAACAAAAAAGGGAcaacgaaagagaaacagaaggaACGGTTAATGAAAGCGTACACAACGCTGAAGCAAGTATGTGTGAATCATTACCAATGAttaaacaagagaaagaatggGGAGATGATCAAGAAAGTGAATTATCGATGGATCAAATAGTTTCAAATGTATTTCAAACTAAaaacaaaccaaaagaaaatagaatacaTGATAAACAGTTTACTCAAGTACACGTTGACATAAATACGATGGAAgctcttttaaaaatttcgaataacAATTTCCTTGACAAATCTTTGCCGTATGatggtaatattaataataatactgatAGTAATACTGATAGTAATACTGATAGTAATACTAATAGTAATACTAATAGTAATACTAATAGTAATactaatagtaataataatagcagtaataataatagcagtAATAATAGcagtaataatagtattattagtAAATCTTATGCATTACGTTCcttaaataattcgaaagaGCTTAATAATAGCGTAACACCACCTACAGTTGtacagaaaaataatcaaagcgatgataaattaagtaaatatttagatgcatgtaaaaaatgtataattccTCTGGTAAAATGTGATAGTATTATAAATGTGACAACATCAACTAAATTGAATTCGaactttttacaatttaatagaCTATCTTCTCAGATTTCACGACCATCACTTAATCATAAGTCTATTAACTATAAATTAACacttagaaaaagaaagagtaccACGTCTTCTTCTATCGAAGAACCGCCCATAAAAATCACTCGATCGCGAAGTATGAATAGTCCATTAGAATTACCTATGAGCAATGATATTATACAtcatacgaaaaaaagaatgtttgGTCAAAAATTGGAAAGATCTCtgagaaaagataatattaagaaTTCCAAAGTTACACCGATTGTTAAGAAACTCAATACTGATGTATTACGAAACAAAAAACTTGCAATTAACAATGTTCAATTAAAGGAAGTTAAGATATCTTTGATAAAGTTACCGGagattaaaaaggaaataatcgAGTCGGCAAATATTGGAAACGAAATTACTCCTACAGAAACTTTTCTTTgtcaaatttgtaatttatcgtTGGCCTCGGAGCAAATTCTGAAAGATCATCTAAAGAAATGTCACACGGCGTATATTTCAACTATTTGTAAAGCGAAATATACCTCCAAACGACGTTTATTGGACcattatttaaaagaacatGACACGTGGGCTAGCAAATGCTGCGTTTGTCAACAATTCTTAAACAGCCGATTTTTACTAAGACAACATATGCTTTTACATTGTATCAAAATAACTTtatcgaaaaaagatcgtCCTGTTTcaaataagaattttaaatgtagtttattaaaaaataataactgcAAACGTACTGGTTTTAAAATAATGCTGCGAACACCAAAACCGTCAAAGAAATGTCGAAAGATTAATCATTATGgtaataaatatgttaataaaccAACAAAACGTCAGAAGAtctataataatgataagaaTAATGAAGAGAAACAAACGAAATATCAAGAGATCgataatgatgaaaataataaaaaaaaaacaatagaacctgaagaaattaataatgataagaaTAATCAANNNNNNNNNNaagaaaaaacaacagaacctgaagaaattaataatgataagaataataaagaaaaaacgatagaATTTCAAAAGGTTGATGATAATGACGATCATGGCGATTGTCTAGAAATACTAGAGGATAATTTTAACGTAAATAACGCTGAGAATATGACGAAACAAGTTAGTAAAAGCAAAGAGAATGATGATGCTGGtgttattgaaaaaagaaatgaatcagAGACTGATACGGTACTCTGTATTGACTTAACAGAACCATTAGAAAGTGATAGTACTGAAGTTCCTTGTTCTAGTAATATGATAAAAGAACCAATGATGGATTTTTCGCAAGTTGTTAACTCAACATTTATCATTTGTAATCCTAACGAGAATGcgcaaacaaaattaacatcaaatattaataattcgataCAACCGAGTGTTAACGATAGTAACGAGCCTATAGAAGTAACAGAAATTACagcagagaagaaaaaatatccatGTTCTATTTGCAAACAACAGTTTCAAAAGCTTGAAAGTTTGCAACAACACAAACGTACCTACGATCCGTCGCCAAATAATTATTGTGGCCACTGTAAgctatatttttcgaataaatacatattgaAAAATCACATGAATGCTACTCACAATATAAGTATTTgtaattcatataaaatgCATTGCCAATTTTGTAATCAAGGTTTCCGTACTCAGAACAATCTTCGAATACACGAGTTGCATTATCATACAACAGCAGTAActgtaaacaataaaaaaatcacgGATTTCTTGCAAATTTCGGACagagaaaataatcgatcgacAAAAACGATTTGCAAGGTTTGTGGCCTATTCTTTGACACTGTCGAAAGTTATCAGTTacattatatgtatttttataaagatcATATATTTTCCTGTAAATTATGTGACAAAGTATTTCGCGGATTATACATGATGTACCGTCACAACAAACTTTTCCATCATTCTGGAGATACttcaatattttacaaatacaaatGCATATATTGTCACGAAGGATTTGTTGCCGAGGTACAATTGCAAGCTCACATGTCACACGTGCATCCGAACAAACAAGTAAACGAATCACCGTTAAATTCTATAAACTATAATCAAACTAATAAATCTTATGTATGTTCCAAATGTAACATGGAATTTTTTAGCGTTAACGAACTCTTGATAcacattgaatatttttcgaatcatGGCAGTTATAGATGTTCCAAATGTTCTCGAAAATGTTATAACTTATCGATACTCAACGATCATATGAATCTGACTCACTTCAATGACGGGTTAACGAAAAGATACATGTGCGATATTTGTGGAGAAGTTTTAATATCCAAAACTTTTCTCTTGTGTCATCAGAAACACGTTCACGGTGATTTACAAAATGAACAAATCGTATCCACTAACAAAAATCCTACAACTGATTTACATATAGACGAGGTCACTAATGacaatgtattaaaaaatgataatgaagCGGTAGTACTTATAAATCCTCCTAATTCTTCTCCGATCGCtatgcaaaaatacaatttttattgttcgATATGTCCCGTTAAGTTTGATaaggaaatttatttgaagGAACATTTGATCGAATATTTGGATTACGGCGATTATCAGTGCAACGAGTGTCTAAGGCGATTCGCAAATTACGATTTCTTGAAGAAACACgctaaaaatcatttgaaaccGGGTATGGCCAAGACGAAATATTATTGCATTCTTTGCAACGAAGTTTGTAAATCTTCTATAATCCTCGAATCTCACGTTGCTCATTTGCACGGACGTATTGTTTTTAAAGATGATCCGCCGAAGAAtgtttaa
- Protein Sequence
- MARVRQYSRPLDPITAKFDFSQISTFNRENIMIKQEPCDTNNVKMNENCVSTNIQCKYIDLTKDNSSQQENVVSSTAENLSNNVITSQIRKEPILMGNAIIENNKHLQQMERSLVIDESNENVGTLEKSDNINKFKLQKNAAQLQNTTTQCSMCLLSFPSQQILNFHNSYYESTNLYFCHSCASKSCYHIKEKNSKKTYYYNMYECDICKDRFKYKKHMQAHLLNYHKKEINSMNVVENDKIMINHSTVSQSITPIKDKLIQQKRDNERETEGTVNESVHNAEASMCESLPMIKQEKEWGDDQESELSMDQIVSNVFQTKNKPKENRIHDKQFTQVHVDINTMEALLKISNNNFLDKSLPYDGNINNNTDSNTDSNTDSNTNSNTNSNTNSNTNSNNNSSNNNSSNNSSNNSIISKSYALRSLNNSKELNNSVTPPTVVQKNNQSDDKLSKYLDACKKCIIPLVKCDSIINVTTSTKLNSNFLQFNRLSSQISRPSLNHKSINYKLTLRKRKSTTSSSIEEPPIKITRSRSMNSPLELPMSNDIIHHTKKRMFGQKLERSLRKDNIKNSKVTPIVKKLNTDVLRNKKLAINNVQLKEVKISLIKLPEIKKEIIESANIGNEITPTETFLCQICNLSLASEQILKDHLKKCHTAYISTICKAKYTSKRRLLDHYLKEHDTWASKCCVCQQFLNSRFLLRQHMLLHCIKITLSKKDRPVSNKNFKCSLLKNNNCKRTGFKIMLRTPKPSKKCRKINHYGNKYVNKPTKRQKIYNNDKNNEEKQTKYQEIDNDENNKKKTIEPEEINNDKNNQXXXXEKTTEPEEINNDKNNKEKTIEFQKVDDNDDHGDCLEILEDNFNVNNAENMTKQVSKSKENDDAGVIEKRNESETDTVLCIDLTEPLESDSTEVPCSSNMIKEPMMDFSQVVNSTFIICNPNENAQTKLTSNINNSIQPSVNDSNEPIEVTEITAEKKKYPCSICKQQFQKLESLQQHKRTYDPSPNNYCGHCKLYFSNKYILKNHMNATHNISICNSYKMHCQFCNQGFRTQNNLRIHELHYHTTAVTVNNKKITDFLQISDRENNRSTKTICKVCGLFFDTVESYQLHYMYFYKDHIFSCKLCDKVFRGLYMMYRHNKLFHHSGDTSIFYKYKCIYCHEGFVAEVQLQAHMSHVHPNKQVNESPLNSINYNQTNKSYVCSKCNMEFFSVNELLIHIEYFSNHGSYRCSKCSRKCYNLSILNDHMNLTHFNDGLTKRYMCDICGEVLISKTFLLCHQKHVHGDLQNEQIVSTNKNPTTDLHIDEVTNDNVLKNDNEAVVLINPPNSSPIAMQKYNFYCSICPVKFDKEIYLKEHLIEYLDYGDYQCNECLRRFANYDFLKKHAKNHLKPGMAKTKYYCILCNEVCKSSIILESHVAHLHGRIVFKDDPPKNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01235295;
- 90% Identity
- -
- 80% Identity
- -