Pdor002576.1
Basic Information
- Insect
- Polistes dorsalis
- Gene Symbol
- SCAND3
- Assembly
- GCA_010416905.1
- Location
- QUOG01000001.1:12840547-12843471[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00033 0.023 14.8 3.2 2 23 401 422 400 422 0.97 2 15 0.015 1 9.6 3.9 1 23 428 451 428 451 0.95 3 15 4e-06 0.00028 20.9 1.7 2 23 547 568 546 568 0.97 4 15 7.2e-06 0.0005 20.1 2.7 1 23 574 596 574 596 0.97 5 15 0.98 68 3.9 1.6 2 23 603 624 602 624 0.95 6 15 9.8e-07 6.8e-05 22.8 1.4 1 23 639 661 639 661 0.98 7 15 3.7e-06 0.00026 21.0 1.2 3 23 669 689 667 689 0.98 8 15 1.2e-05 0.00085 19.4 1.9 1 23 695 717 695 717 0.98 9 15 0.00079 0.055 13.6 0.2 1 23 723 745 723 745 0.99 10 15 1.8e-05 0.0013 18.8 0.3 1 23 751 774 751 774 0.92 11 15 1.8e-05 0.0013 18.8 1.3 1 23 780 802 780 802 0.98 12 15 0.00039 0.027 14.6 4.7 1 23 808 830 808 830 0.98 13 15 3.2e-06 0.00023 21.2 0.2 1 23 836 859 836 859 0.96 14 15 8.7e-06 0.00061 19.8 0.5 1 23 865 887 865 887 0.95 15 15 6.9e-07 4.8e-05 23.3 4.4 1 23 893 915 893 915 0.99
Sequence Information
- Coding Sequence
- atgatagaaatggaaaataaGCTTTCAGTAGATACGGATTGGTCTTCTgggaataaatatatgaaaagttCATTGCATACATTTTTCACTGTcactaaaaataatcataacgttgtatctgtaaaaaaagaaattcatttagaAGAGGACAAACGTAACTTTCAAGCATTAAAGAATATGAAACATCCTGAAGATTTGACAAATAAagacagaaataaaataaacgacgaAGAAGCTTCTATATCTTCGGATATAATAACAACAaaTCATAAATCACAGCATTTAAATTCCACATTGACTAGGACTGTCGTTGATGCACATGTACATTCAGAGATCAAAGATGTACATGAAACATTGTGTCGAAGAGGTCAAATCGATGTTATAGAAATGCCATTAgaacaaacatatttttataaatattttttggtttATGAAGATCTGCCCTCAAAATTTGTGGTACTGCATGCTTTGCAAAGTAATACAGCGAAAGAAGTAGCTAATAAGCTGCTAgatatattatcaattattggAGCTCCTCAAGTTCTACAAAGTGGAAACGGACGTAATTTTGCTGAACAAATAGTCAAAGAGTTACGTACTTTATGGAAAGATTTTATCATATTACATGGAAACATTTGCAAGTGTGAAGAAGATGATAACagagattttaaaaatttattgaaatgttggttaaacaaaaatcctgGTAAATCGTGGTACGAAggtttaaaatttatacaaatctttcaaaattcgACATATCGTTGTCCGAATGGTAAAATACCGTGCGACTTATTATTTGGACAAAACGTTCATCAAGAgtttcaaaaattaatcatcCCCAAAAATGCTGCAAACGACATATGGACAGAAGAAGAATGGATTAATGatacgttaaataaaaaactaaataacaCTACTACGATTGACAATTCAACTCATACatctgaaaatataatttcgataaacATAAGCGATACGGATAAAAATGACAATtGCCATATTGAATATGATGATACATTGcataataatcgtataaacGATCGCGAATATTCTCTTCAATTTCAAAAGAATTCAAATAGTTTTAAATTTGTCAGCGTTAAAAGTGAAACATTTTTGGATAATTTACAAATGGAAGATTCAACATGTGCGGAAGCAAATATCGAAGAACATAATTctcatataaataatcaaaacttAACatgtaaaatttgtaataaacaGTACATGAAACTGggacatttaaaaaatcatgtGAAAACTCATATTAAAAAACGACAATTTGATTGCACATTATGTAACAAAACATTTCATATCTTAAAATTATATGAGAAACATATGCAACAGTTTCACGAGAATCCTCAACAAATTAACAGTGATACagattgtataaaaaatgataaaattaatagtaaatatactgaaataaattttagtaaaaaagaaagtatagaaacagagaaaatTCCAAAGACACATAAATCAATAATGAAATCTTATCGAAGTAGTAACATAGTATTGAATCATACAGATAAATGTATTAgatctattaaaaaatcaaatcctATAAATGGAAGACAATTtcctagaaagagagaagaaaatagaatatcaAGATTGAATGGAAATCCAACGTTGGAATGTTCatattgtaaacaaaaatttagtTTTCCTAGTGTATTAAAAAGGCACATGCGTTCTCATACCAATGAAAGACCttacatttgtaaaatatgtaataaaagttttaaacaattaGGTCACCTTAGTCAACAttcgttgacgcataaagatTACAAATCTATCCAATGTGCAACATGTTGCATTAAATTTGAATCTTTAGATTTACTTAAAACTCATTCGCAATCACATCAAGGTGAATCAATATCAAAGTCTAAAGAAATTTATCGTCTTTTTGAGTGCGACAATTGCAAGAAGGTTTTTACAACAAAAAGTGTGTTGGAACGTCATATATTTACTCACACGCATGAGCGTCAATTTGGATGTAAAATATGTGGGAAGCGATTTAAGCAAGCTGGTCACGTAAAATCTCACATGTTAGTTCATACCggagaacgaaaatttgaatgCACTGTATGTTCGAAGAGATTTAGCTTATcgaattcgttaaaaaaacatatgtaCATTCATAATGGTGAAAAACCATATCAGTGTGACGTGTGCGGAGCAAGATTTCTAGAGAAAAGGAATCTTAACGGACATCTTATGACACATACAAACGAAAGGCCATTTTCTTGCAAAATATGTGGCAAAAGATACACGTTAGCAGATACGCTACGTCGGCACGTCAGTGCTGCTCATGAAGATGGTCGAACGTATCAATGCGAAATTTGTGCAAAAATGTTTAAACAGCTCGCGCATTTATCCGTTCACAAGAAAGTACATAACGACGAACGTCCTTTCCAATGTCATCTTtgtgaaaaaaattttaaacacaAGAATGTTCTTAAATCTCATTTAGCAATTCACGCTAATATTCGACCTTTCGAATGCGACATTTGTAAAGCAACATTTGTTAGAAAAACTAATTTGCAAACACATATAGCATCGGCACATATGAATGAACGTCCATATGCTTGTACAATTTGTGGTAAACGTTTTAAACAGATAAGTCACTTAAATGGTCACGTTGTTGTTCATAGTAATTCAATGCCTTATCAGTGCGATTATTGCGATCGTCGCTGTAATAGATTGGACAATTTAAAAAAGCACATGCGTCTTCATACAAAAGAcaaagaatga
- Protein Sequence
- MIEMENKLSVDTDWSSGNKYMKSSLHTFFTVTKNNHNVVSVKKEIHLEEDKRNFQALKNMKHPEDLTNKDRNKINDEEASISSDIITTNHKSQHLNSTLTRTVVDAHVHSEIKDVHETLCRRGQIDVIEMPLEQTYFYKYFLVYEDLPSKFVVLHALQSNTAKEVANKLLDILSIIGAPQVLQSGNGRNFAEQIVKELRTLWKDFIILHGNICKCEEDDNRDFKNLLKCWLNKNPGKSWYEGLKFIQIFQNSTYRCPNGKIPCDLLFGQNVHQEFQKLIIPKNAANDIWTEEEWINDTLNKKLNNTTTIDNSTHTSENIISINISDTDKNDNCHIEYDDTLHNNRINDREYSLQFQKNSNSFKFVSVKSETFLDNLQMEDSTCAEANIEEHNSHINNQNLTCKICNKQYMKLGHLKNHVKTHIKKRQFDCTLCNKTFHILKLYEKHMQQFHENPQQINSDTDCIKNDKINSKYTEINFSKKESIETEKIPKTHKSIMKSYRSSNIVLNHTDKCIRSIKKSNPINGRQFPRKREENRISRLNGNPTLECSYCKQKFSFPSVLKRHMRSHTNERPYICKICNKSFKQLGHLSQHSLTHKDYKSIQCATCCIKFESLDLLKTHSQSHQGESISKSKEIYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKICGKRFKQAGHVKSHMLVHTGERKFECTVCSKRFSLSNSLKKHMYIHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANIRPFECDICKATFVRKTNLQTHIASAHMNERPYACTICGKRFKQISHLNGHVVVHSNSMPYQCDYCDRRCNRLDNLKKHMRLHTKDKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090135;
- 90% Identity
- iTF_01235172;
- 80% Identity
- -