Pdom007844.1
Basic Information
- Insect
- Polistes dominula
- Gene Symbol
- -
- Assembly
- GCA_001465965.1
- Location
- NW:2368259-2370557[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 1.6 7.6e+03 -3.8 0.1 27 39 133 145 132 149 0.74 2 7 0.0039 18 4.6 0.0 23 44 185 206 177 214 0.86 3 7 0.0063 30 3.9 0.0 22 45 212 235 207 240 0.89 4 7 0.12 5.6e+02 -0.1 0.1 25 45 243 263 237 270 0.85 5 7 0.00042 2 7.7 0.0 19 44 293 318 287 323 0.89 6 7 3e-06 0.014 14.6 0.9 22 49 324 351 320 355 0.90 7 7 0.11 5.2e+02 -0.0 0.0 9 38 425 454 422 458 0.86
Sequence Information
- Coding Sequence
- atgaCTGTAGTGTTAGACAGTGAGGAAAACTCCATTACTAAGCCTTCTAAAGCTTCCATCAAAAACGATATTGACAGTGAacaagatttatataaattgacaaatgtaaatatagaCAGTGAGGAAAATTCCATTACTAAGCGTTCTAAACCTTTCATTACTAAAATAGAAACTTTTAGAGAACTAGGTACGCAAATACGTTTAGATTATGAGTGCTCAGATTCGGATGACTCTTTAATATCTGATGATGAAAGAGTACATGTTAAAGAGATAATATCAGATACAATGGTTAATTTGGTTAATAAAGAATCATCGAAGGAGAAGGGTAATCgtagaaaaagattttctgACGAAAGTCATATATTAGTAATACCTGGAAATCCCGAaaagtataaatgtaatatttgtcataaaatatttctaaataaaaaaaacaaaagttatcACGATGCATGTGTAACTGGAATTAAGccttataaatgtaatatttgcgATAGAACTTTCGTGAAACATTCTCATTTTGAATATCATGAAAGAACTCACACTGGATATAAACCATATAAATGTGATATATGCGATAAGGCATTTCCacaacaaaacaaattgaagAGACATATGATATCACATACCGataaaaaaccATTTGAATGTCACATTTGTGAGAAGAAGTATCGTAAACATCAAGATTTGAAAAACCATTTGAAAACTCATACCGATTCTGATTTATCTACTTGCACAGTTTGTAATAAAACTTTCAAGTGTTCGGCAAGTTTGACACTTCATATGAAAACACATTCGGATATACGACCATATCAGTGTGACCAATGCAGTAAGAGTTTCAAAATTAATGGTTTACTGACACGTCACAAGAAAACTCATCAGAAAGATAAACCTTTCACTTGTGATAAATGCAATAAAGTTTTCGTAACCAAGTTCGAATTAAGACGTCATATTATAACACATAcagagGACAGACCATATTCCTGCAAACATTGTGGTACTGTCTTCAGGAGGAAAGATAATTTACGACGTCACTTAAGTCATCATCATATGGAAACTTCAACAATTGTTATGAATAAAGTATCaaatgaaagtaataaaagtgaactaaaaacaaaaaataaacttggcacagaaaaagaagaaaacttagaacataagaaaaaacgaaaaaagaaacaaaaatcaatgacTAATGTTATACCAAAATATCCCGATAAGGTTTCAATTGGTGTTACTAATTCTCGTGAACAAATAAACTCTAGGTTAGATCCGATGGGTAATATCACACCAATTATAAGAACAACTAGCGAGCTAAGTAATGCTGTACCTGTTATCTATGGTCCTACTAAAAAATCCAAAGATAAGactgaaaataagaaaacatttacatatacagaACCAATACCACTTGCTGAAGCTGTTGTTATAAACAGAAGAATCGAAGAGAAGTTATATCCTCAAAATACGTCTCgtcatgattattatttaagtgaTTATTTAGATATTCCTTACATGCAACATCACACCATGGCATCTACATCGACGTATGCTAATCCTTgtatgagaaataataattccaaTCTGAATGATCCATCCTCTGAATCAACAGTGACAAGTGAAGCTACCTTTACATGCCAAACTGCAGAATCAGGTGACAATTTGGTTAATactgaagaaaagaaacaagaacaaGCAAACTATGTCATCACTATAAAAAAGACGCGTGATAGATCTTCTTAA
- Protein Sequence
- MTVVLDSEENSITKPSKASIKNDIDSEQDLYKLTNVNIDSEENSITKRSKPFITKIETFRELGTQIRLDYECSDSDDSLISDDERVHVKEIISDTMVNLVNKESSKEKGNRRKRFSDESHILVIPGNPEKYKCNICHKIFLNKKNKSYHDACVTGIKPYKCNICDRTFVKHSHFEYHERTHTGYKPYKCDICDKAFPQQNKLKRHMISHTDKKPFECHICEKKYRKHQDLKNHLKTHTDSDLSTCTVCNKTFKCSASLTLHMKTHSDIRPYQCDQCSKSFKINGLLTRHKKTHQKDKPFTCDKCNKVFVTKFELRRHIITHTEDRPYSCKHCGTVFRRKDNLRRHLSHHHMETSTIVMNKVSNESNKSELKTKNKLGTEKEENLEHKKKRKKKQKSMTNVIPKYPDKVSIGVTNSREQINSRLDPMGNITPIIRTTSELSNAVPVIYGPTKKSKDKTENKKTFTYTEPIPLAEAVVINRRIEEKLYPQNTSRHDYYLSDYLDIPYMQHHTMASTSTYANPCMRNNNSNLNDPSSESTVTSEATFTCQTAESGDNLVNTEEKKQEQANYVITIKKTRDRSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01233165;
- 90% Identity
- iTF_01233165;
- 80% Identity
- iTF_01233165;