Pdom005160.1
Basic Information
- Insect
- Polistes dominula
- Gene Symbol
- -
- Assembly
- GCA_001465965.1
- Location
- NW:445167-450705[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.22 13 5.6 2.0 6 23 260 277 257 277 0.92 2 12 0.0018 0.11 12.2 0.4 1 20 282 301 282 305 0.92 3 12 0.00022 0.013 15.0 3.0 3 23 319 340 319 340 0.98 4 12 0.001 0.062 12.9 0.5 3 23 353 373 353 373 0.98 5 12 1.2e-07 7e-06 25.3 1.0 2 23 421 442 420 442 0.97 6 12 0.00026 0.016 14.8 0.2 1 23 447 470 447 470 0.96 7 12 0.092 5.5 6.8 0.7 2 23 551 572 550 572 0.97 8 12 1.3e-05 0.00077 18.9 0.6 1 23 581 603 581 603 0.97 9 12 0.00014 0.0086 15.6 0.8 1 23 612 634 612 634 0.98 10 12 0.027 1.6 8.4 3.6 1 22 640 661 640 661 0.95 11 12 0.0002 0.012 15.2 0.3 1 23 686 708 686 708 0.98 12 12 5.6e-07 3.4e-05 23.2 5.5 1 23 801 824 801 824 0.98
Sequence Information
- Coding Sequence
- atggcTGTTGTTAACAAGTGGGAGAATGTATGTAGATTGTGTTCAGAGGAGAAAATCGAGATGTTGCCAATATTTGGCATTGAAGGTGTACAACGTAAAGTGGTGCAAAAATTAAGAGCTTGTTTGCCAGTTTTAGTGTATAAAACCGACCCACTGCCTAAACAAATTTGTCAGTTTTGTGCAGCACGTCTTGAtgatatttatgaatttagaGAATATTGTCTTAACGTTTATAAGGATATGTATGTTAAACTGTTAAATTATAAGGACGTTGAATCTGTACAGATATTTTTTGAAGCTATGAAAAATTCTCCTGATCCTTGTCAGGCACAACTCTGCAGAGAAAAAGTTAGAGCTCCGCCACCATTAGTGCCATTACCGTCATTACTATCTTTTGAAAGTTCTTCTATGTTAACCGAAGTTAATCGAGAacaattatctaataattgtATCGAAACATTATCTGAACTACCATGTGAAGTAGAAATTGAAGAAGTTAATTCAGAAACATTTATTGGAGATGATACATGCGGAAGCACAGACTCGAGGACATTATCCGATAATGAATTCTATCAAATGACAGACAAACAACttgattttaatgtttttgaacatatagaaaatgataatagtTCTTCTAAGGAAGAATTTGTAActaagaaagaggagaaacgAACTAGTATTTTAGAACAAGTTTTAACTGGAAGTTTAACTATGAATGATCGTATGGAATTAAAAGGCAGGGAACATTTAACGTCAGAGTGGTGGTGTGCACCTTGTAATAGTTATTACAAaACAAAAGAATGCCTGAGAAAACATCTTCAATCCCATGGTCCACGTAAATATAAGTGTAGAAAGTGTCGTATGTCTTTTGAATCAGTTGAAAATTTGGCCAAACATGAAGGTGCTACTCATTGGAGAGTTACATtggatttcaatgaaaaagcGAATGGGTGTCATCGATGTGATCGCAAATTTGTTAGTTGGGAAATGTTAAAGCAACATAGAATGCGTGATCATTTTGgtgaaattattcgaatagGAACGAATACATGGTGCTCATCTTGTAACAGatCTTTCCCCACTGAAGAAGCATATCAAAATCATCAACAATtgcatgaaaatattaattattcgatgGCACAAATGAAACAACTTTCTATGAaactttctataaaaaaaaaattttctatatttggtCATGGAGATCATTTACAAGAGATTAAAAAGGAACATTCGCCTGAAAATACTAAATCGCTTACTTGCCCTACTTGCGGAAAAGTATGTACGCAACAAAGTGCATTATCCAATCACATGCGTATTCACGAAcctaaaagatataaatgtgACATTTGTGGTCGATCATTTGgattatttatacgtttaaCTGCACATATAAAGAATGAACATGATCAACAAACTTCTATGTCTCCACTTACGGCATCCGTTGAACAAGAAGAAGCTTTAAATGCTGCACGAGAAGCGCGAGAAACGCGAGAATCTAGAGAAGCTAGAGAAGCTTGTACTCGTGCAGGAAAAACTAGAACATATTCAGaggcatttaatcgaaataatatattaaatagcgTTGAATCTTTAGCAAAACAAAATACTTCATTACAAACTAGCaatgaaaatatgaatgtTTCACGCTGTGGTATTTGTTTTCAATGGTTCAATGATTACAGGACTATGATGATACATTTACGAACACATCCAGAATTCTATACATGTAAAAATTTCACTTGTCctatatgtaaaatatcttttaaagaaaaatggcAACTTTCCAGACACAAgGAGATACATAACCGTACCGACACATCATCTTCCTATGCATGTAATGTTtgcaataaaacatttttagaaaaaagtttattaaaaatacacgaaaagacacatgttataaataaaacgtatcATTGTCcaaaatgtaataaactttttttcaaagaagttTCATTGCTTTCCCATCAATGTACGGGAGAACCATTACATCAGAAAAAAGATTCAACTTCGAAAGTCAATCCAAAATCGTTACAAactacgaaaaaatataagtgcTCTGAGTGTAACGCAACTTTTAGTAGTGAGATATTAAAGAAAGCTCATATGGAAGTTCACATAGAGAGTATTAATGCCGCAgtACGAGAAGCGATACTAAAAGATGagctagaaaaatatttaatgccAGAATTGAAACCAGAAACGTCGCTGGAACACATCGTGCCCTCTATCGAACCAAAAGTTGAGATCAATGAAGAAACTGCAACACCACCTCCACTTAAGAGAACTCTCATCAAAACAAGTGGAGGATATCGTTGCGGTTTTTGTCAATCTCCATTTGTCTTGAGAGAAATAGCAATCGCACATTTGAAATCTGCGCATCCTGTAATGCCATATCAATGTCCTTATTGTACAAAACGATTTACAACTCAATACACATTTACGCATCATATTAAGACCGATCATCCTGAAGAACcagaaaattaa
- Protein Sequence
- MAVVNKWENVCRLCSEEKIEMLPIFGIEGVQRKVVQKLRACLPVLVYKTDPLPKQICQFCAARLDDIYEFREYCLNVYKDMYVKLLNYKDVESVQIFFEAMKNSPDPCQAQLCREKVRAPPPLVPLPSLLSFESSSMLTEVNREQLSNNCIETLSELPCEVEIEEVNSETFIGDDTCGSTDSRTLSDNEFYQMTDKQLDFNVFEHIENDNSSSKEEFVTKKEEKRTSILEQVLTGSLTMNDRMELKGREHLTSEWWCAPCNSYYKTKECLRKHLQSHGPRKYKCRKCRMSFESVENLAKHEGATHWRVTLDFNEKANGCHRCDRKFVSWEMLKQHRMRDHFGEIIRIGTNTWCSSCNRSFPTEEAYQNHQQLHENINYSMAQMKQLSMKLSIKKKFSIFGHGDHLQEIKKEHSPENTKSLTCPTCGKVCTQQSALSNHMRIHEPKRYKCDICGRSFGLFIRLTAHIKNEHDQQTSMSPLTASVEQEEALNAAREARETRESREAREACTRAGKTRTYSEAFNRNNILNSVESLAKQNTSLQTSNENMNVSRCGICFQWFNDYRTMMIHLRTHPEFYTCKNFTCPICKISFKEKWQLSRHKEIHNRTDTSSSYACNVCNKTFLEKSLLKIHEKTHVINKTYHCPKCNKLFFKEVSLLSHQCTGEPLHQKKDSTSKVNPKSLQTTKKYKCSECNATFSSEILKKAHMEVHIESINAAVREAILKDELEKYLMPELKPETSLEHIVPSIEPKVEINEETATPPPLKRTLIKTSGGYRCGFCQSPFVLREIAIAHLKSAHPVMPYQCPYCTKRFTTQYTFTHHIKTDHPEEPEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01232563; iTF_01234530; iTF_01235208; iTF_01233842;
- 90% Identity
- -
- 80% Identity
- -