Pcan005210.1
Basic Information
- Insect
- Polistes canadensis
- Gene Symbol
- -
- Assembly
- GCA_001313835.1
- Location
- NW:414796-420065[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.3 80 3.1 1.5 6 23 284 301 281 301 0.91 2 13 0.0012 0.072 12.7 0.4 1 23 306 329 306 329 0.95 3 13 2.5e-05 0.0015 17.9 2.5 2 23 342 364 341 364 0.96 4 13 0.077 4.8 6.9 1.8 3 23 377 397 377 397 0.98 5 13 1.1e-07 7e-06 25.3 1.0 2 23 442 463 441 463 0.97 6 13 0.0032 0.2 11.3 0.8 1 23 468 491 468 491 0.94 7 13 0.18 11 5.8 0.4 2 23 566 587 565 587 0.96 8 13 2.6e-05 0.0017 17.8 0.6 1 23 596 618 596 618 0.95 9 13 0.00086 0.054 13.1 0.4 1 23 627 649 627 649 0.98 10 13 0.084 5.2 6.8 3.6 1 22 655 676 655 676 0.95 11 13 6.2e-06 0.00039 19.8 0.9 1 23 702 724 702 724 0.99 12 13 0.27 17 5.2 0.1 1 23 788 811 788 811 0.97 13 13 5.4e-07 3.4e-05 23.2 5.5 1 23 816 839 816 839 0.98
Sequence Information
- Coding Sequence
- atgtatatatatatatatataaatatatatataaatataacgataacacaattagttgttgaaatattaaaaatggcTGTTGTTAACAAGTGGGAGAATGTATGTAGATTGTGTTCAGAGGAGAAAATCGAGATGTTGCCAATATTTGGCATTGAAGGTGTACGACGTAAAGTGGTGCAAAAATTGAGAGCTTGTTTGCCAGTTTTAGTGTATAAAACCGACCCACTGCCTAAACAAATTTGTCAGTTTTGCGCAGCACGTCTTGACGATATTTATGAATTTAGAGAATATTGTCTTAATGTTTATAAGGATATGCATGTTAAACTATTAAATTATAGGGACGTTGAATCTGTACAGATATTTTTTGAAGCTATGAAAAATTCTCCTGATCCTTGCCAGGCACAACTCTGCACAGAAAAAGTTAGAGCTCCGCCACCATTAGTGCCATTACCATCGTTACTATCTTTTGAAAGTTCTTCTATGTCAACCGAGATTAATCGAGAACAACTATCTAATAGTTGCATCGAGACATTGTCTGAACTTCCATGCGAGGTAGAAATTGAAGAAGTTAATTCGGAAACATTTCTCGGAGATGAGACATGCGAAAGTACAGACTCAAGGACATTATCTGATAATGAATTCTACCTAATGACAGACAAACAACTTGATTTTAACGTTTTTGAACATATGgaaaatgataatgatttttctaaGGAAGAATTTGGAACTAAGAAAGGGGAGAAACGAACTAGTATTTTAGAACAAGTTTTAACCGGAAGTTTAACTATGAATGATCGTATGGAATTAAAAGGCAGGGAACATTTAACATCAGAGTGGTGGTGTGCAccttgtaataattattacaaaACAAGAGAGTGCTTGATAAAGCATCTTCAATTCCATTGTCCACGTAAATATAAGTGTAGAAAGTGTTCTATGTCTTTTGAATCAGTTGAAGATTTGGCCAAACATGAAGGTACTAATCATTTGAAAGTTACATTggatttcaatgaaatagtGAAAGAGTGTCATCAATGTGATCGCAAATTTGTTAGTTGGGAAATGTTAAAGCAACATAGAATGCGTGATCATTTAGGTGAATCTATTACATTAGGAATGAATACATGGTGCTCGTCTTGTAACAGatttttccCCACTATAGAAGCATATCACAATCATCAACAATTGCaccaaaataataatcattccaTGGCACAAACGCAACAACTTTCTATGCAATCTagtaaattttctatatttggtCTTGGAGATCATTTACAAGAGATTAAAAAGGAACATTCGCTCGAAAATACTAAATCGCTTACTTGTCCTACTTGCGGAAAAGTATGTACGCAACAAAGTGCATTATCCAATCACATGCGTATTCACGAACCTAAAAGACATAAATGTGACATTTGTGGTCGATCATTTGgattatttatacgtttagTAGCACATAGAAAGAGTGAACATGATCAACAAACTTCTATGTCCCCACTTATGGCATCCGTTGAACAGGAAGAAGCTTTAAATGCTGCACGAGAAGCGCGAGAAGCTAGAGAAGCTTGTACTCGTAGAGGAAGAACCAGAACATATTCAGAGgcATTTGATCgagataatatattgaatagcGTTGAATCCTTAGCAAAACAAAATGCTTCATTACAAATTAGcagtgtaaataaaaatgtttcacgCTGTGGTATTTGTTTACAATGGTTCAATGATTATACAACTATGATGATACATTTACGAACGCATCCAGAATTCTATACATGTCAAAATTTCACTTGTCctatatgtaaaatatcttttaaagaaaaatggcaACTTTTTAGACACGAGGTATCACATAACCGTACGGACACATCATCCTCTTATGCATGTAATGTTTGCAATAGAATATTTCTAGAAAAGAGTTTATTAAAAGTACATGAAAAGACACATGTTGTAGATAAAACGTATCATTGTTCAAAatgtaataaactttttttcaaagaaatttcattgctTGCCCATCAATGTACGGGAGAGCTATTACAtcggaaaaaagatttaacttCGAAATCCACCCAAAAATCGGTATTACAAAATACGAAAAGATATAGGTGTTCTAAGTGTAACGCATCTTTTACTAATCCGCAATTAAGGAAAGCTCATATGAGAATTCACACAGAGAGTATTAATGCCGCAGTACGACAAgcgataataaaagaagagccagaaaatgatttaatgcCAGAATTGAAACCAGAAACGTCGCTGGAATATATCGTGCCCTCTATCGAACCAAAAGTTGAGATCAATGAAGAATCTACACCACCTCCACTTAAGAGAACTCTCATCAAAACAAGTGGAGGaTATCGTTGCGGTTTTTGTCAATCTCCGTTTGTCTTGAGAGAATTAGCAATCGCACATTTGAAATCTGCGCATCCTGTAATGCCATATCAATGTCCTTATTGTACAAAACGATTTACAACTCAATACACATTTACGCATCATATTAAGACCGATCATCCTGAAGAACCAGAAAATTAA
- Protein Sequence
- MYIYIYINIYINITITQLVVEILKMAVVNKWENVCRLCSEEKIEMLPIFGIEGVRRKVVQKLRACLPVLVYKTDPLPKQICQFCAARLDDIYEFREYCLNVYKDMHVKLLNYRDVESVQIFFEAMKNSPDPCQAQLCTEKVRAPPPLVPLPSLLSFESSSMSTEINREQLSNSCIETLSELPCEVEIEEVNSETFLGDETCESTDSRTLSDNEFYLMTDKQLDFNVFEHMENDNDFSKEEFGTKKGEKRTSILEQVLTGSLTMNDRMELKGREHLTSEWWCAPCNNYYKTRECLIKHLQFHCPRKYKCRKCSMSFESVEDLAKHEGTNHLKVTLDFNEIVKECHQCDRKFVSWEMLKQHRMRDHLGESITLGMNTWCSSCNRFFPTIEAYHNHQQLHQNNNHSMAQTQQLSMQSSKFSIFGLGDHLQEIKKEHSLENTKSLTCPTCGKVCTQQSALSNHMRIHEPKRHKCDICGRSFGLFIRLVAHRKSEHDQQTSMSPLMASVEQEEALNAAREAREAREACTRRGRTRTYSEAFDRDNILNSVESLAKQNASLQISSVNKNVSRCGICLQWFNDYTTMMIHLRTHPEFYTCQNFTCPICKISFKEKWQLFRHEVSHNRTDTSSSYACNVCNRIFLEKSLLKVHEKTHVVDKTYHCSKCNKLFFKEISLLAHQCTGELLHRKKDLTSKSTQKSVLQNTKRYRCSKCNASFTNPQLRKAHMRIHTESINAAVRQAIIKEEPENDLMPELKPETSLEYIVPSIEPKVEINEESTPPPLKRTLIKTSGGYRCGFCQSPFVLRELAIAHLKSAHPVMPYQCPYCTKRFTTQYTFTHHIKTDHPEEPEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01233162;
- 90% Identity
- iTF_01234530;
- 80% Identity
- -