Basic Information

Insect: Polistes dominula
Gene Symbol: SCAND3
Assembly: GCA_001465965.1
Location: NW:611966-616337[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.7e-05 0.0028 17.1 3.7 2 23 402 423 401 423 0.97

2 15 0.029 1.8 8.3 4.2 1 23 429 452 429 452 0.95

3 15 3.1e-06 0.00019 20.9 1.7 2 23 548 569 547 569 0.97

4 15 5.5e-06 0.00033 20.1 2.7 1 23 575 597 575 597 0.97

5 15 0.63 38 4.2 2.1 2 23 604 625 603 625 0.95

6 15 7.5e-07 4.5e-05 22.8 1.4 1 23 640 662 640 662 0.98

7 15 2.8e-06 0.00017 21.0 1.2 3 23 670 690 668 690 0.98

8 15 9.3e-06 0.00056 19.4 1.9 1 23 696 718 696 718 0.98

9 15 0.00061 0.036 13.6 0.2 1 23 724 746 724 746 0.99

10 15 1.4e-05 0.00083 18.8 0.3 1 23 752 775 752 775 0.92

11 15 1.4e-05 0.00082 18.8 1.3 1 23 781 803 781 803 0.98

12 15 0.0003 0.018 14.6 4.7 1 23 809 831 809 831 0.98

13 15 2.5e-06 0.00015 21.2 0.2 1 23 837 860 837 860 0.96

14 15 6.7e-06 0.0004 19.8 0.5 1 23 866 888 866 888 0.95

15 15 5.3e-07 3.2e-05 23.3 4.4 1 23 894 916 894 916 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.7e-05	0.0028	17.1	3.7	2	23	402	423	401	423	0.97
2	15	0.029	1.8	8.3	4.2	1	23	429	452	429	452	0.95
3	15	3.1e-06	0.00019	20.9	1.7	2	23	548	569	547	569	0.97
4	15	5.5e-06	0.00033	20.1	2.7	1	23	575	597	575	597	0.97
5	15	0.63	38	4.2	2.1	2	23	604	625	603	625	0.95
6	15	7.5e-07	4.5e-05	22.8	1.4	1	23	640	662	640	662	0.98
7	15	2.8e-06	0.00017	21.0	1.2	3	23	670	690	668	690	0.98
8	15	9.3e-06	0.00056	19.4	1.9	1	23	696	718	696	718	0.98
9	15	0.00061	0.036	13.6	0.2	1	23	724	746	724	746	0.99
10	15	1.4e-05	0.00083	18.8	0.3	1	23	752	775	752	775	0.92
11	15	1.4e-05	0.00082	18.8	1.3	1	23	781	803	781	803	0.98
12	15	0.0003	0.018	14.6	4.7	1	23	809	831	809	831	0.98
13	15	2.5e-06	0.00015	21.2	0.2	1	23	837	860	837	860	0.96
14	15	6.7e-06	0.0004	19.8	0.5	1	23	866	888	866	888	0.95
15	15	5.3e-07	3.2e-05	23.3	4.4	1	23	894	916	894	916	0.99

Sequence Information

Coding Sequence: atgatagaaatggaaaataagCTTCCAGTAGATACGGATTGGTCTTCTggcaataaatatatgaaaagttCATTGCATGCATTTTTCACTGCcactaaaaataatcataacgTTGTATCtctaaagaaacaaatttatttagaagaaGACAAACGTAACTTTCAAGCGttaaagaatatgaaaaatcCTGAAGATTTGACGAATAAAGACAgtgataaaataaacgatgaaGAAGCTTCTATATCTTCGGATGTAATAACGACAaatCATAAATCGCAGCCTTTAAATTCCACGTTGACTAGGACTGTGAATGAAAATGCACATATACGTTCAGAGATCAAAGATGTACATGAAACATTGTGTCGAAGAGGTCAAATAGATGTTATAGAAATGCCATTGgaacaaacatatttttataaatacttctTAGTTTATGAAGATCTACCGTCAAAATTTGTGGTACTGCATGCTTTGCAAAGTAACACAGCAAAAGAAGTAGCTAATAAGTTGCTagatatattatcaattattggaGCTCCTCAAGTTTTACAAAGTGGAAATGGACGTAATTTTGCTGAACAAATAGTTAAAGAGTTACGTATTTTATGGAAAGATTTTATCATATTACATGgaaatatttgcaaatgtgaagaagatgataatagggattttaaaaatttattgaaatgttgGTTAAACAAAAATCCTGACAAATCGTGGTACGAAggtttaaaatttatacaaatctttcaaaattcGACATATCGTTGTCAAAATGGTAAAATACCGTGCGACGTATTATTTGGACAAAACGTTCATCAAgagtttcaaaaattaataattcctAAAAATGCTGCAAACGACATGTGGACAGAAGAGGAATGGATTAATGatacgttaaataaaaaactaaataacacTACTACGATTGAAAATTCGACTCATACatctgaaaatataatttcgataaaCACAAGCGATAcggataaaaatgataattgTCATATTGAATATCATGATATATCGCATAATAATCATGTAAACGCTCACGATGATTCTattcaatttcaaaagaattcaaacagttttaaatttgtcagcgttaaaagtgaaacatttttagataatttacAAATGGAAGATTCGATATGTATGGAAGCAAACATCGAAgaacataattttaatataaataatcaaaacttaacatgtaaaatttgtaataaacagTACATGAAACTGggacatttaaaaaatcatatgaaAACTCATATTAAGAAACGACAATTTGATTGCAcattgtgtaataaaaaattccatattttaaaattatatgaaaaacatATGCAACAGTTTCACGAGAATCCTCAACAAATTAACAGTGATATAGATTGcataaaaaaggataaaattaatagtaaatatactGAAATAAATCTTAGTAAAAAAGGAAGTATAGAAACAGAAGAAATTCCAAAGACACATAAATCAATAATGAAATCTTATTTAAGTAGTAACATAGTATTGAATCGTACAGATAAATGTATTAgatctattaaaaaatcaaatcctATAAATGGAAGACAATTTcctagaaaaagagaagaaaatagaatatcaAGATTGAATGGAAATCCAACATTAGAATGTTcatattgtaaacaaaaatttagttTTCCTAGTGTATTAAAAAGGCATATGCGTTCTCATACAAATGAAAGACCttacatttgtaaaatatgtaataaaagttttaagCAATTAGGTCACCTTAGTCAACATTCATTGACACATAAAGATTACAAATCTATCCAATGTACAACATGTTGCATTAAATTTGAATCTCTGGATTTACTTAAAACTCATTCGCAATTACATCAAGGTGAATCGATATTAAAgtctaaagaaatttatcgTCTTTTTGAGTGCGACAATTGTAAGAAGGTTTTTACAACAAAAAGTGTGTTGGAACGTCATATATTTACTCACACGCATGAGCGTCAATTTGGATGTAAAATATGTGGGAAACGATTTAAGCAAGCTGGTCACGTAAAATCTCATATGTTAGTTCATACTGGAGAACGAAAATTTGAATGCACTGTATGTTCGAAGAGATTTAGCTTATcgaattcgttaaaaaaacatatgtacATTCATAATGGTGAAAAACCATATCAGTGTGATGTATGCGGAGCAAGATttttagagaaaagaaatcttAACGGACATCTTATGACACATACAAACGAAAGGCCATTTTCTTGCAAAATATGTGGTAAAAGATACACGTTAGCAGATACGTTACGTCGGCATGTCAGTGCTGCCCATGAAGATGGTCGAACGTATCAATGTGAAATTTGTgcaaaaatgtttaaacagTTGGCGCATTTGTCCGTTCACAAGAAAGTACACAACGACGAACGTCCTTTCCAATGTCACCtttgtgaaaaaaattttaaacacaAAAATGTTCTCAAATCTCATTTAGCAATTCACGCTAATATTCGACCTTTCGAATGCGACATTTGTAAAGCAACATTTGTTAGAAAGACTAACTTGCAAACACATATAGCATCGGCGCATATGAATGAACGTCCATATGCTTGTACAATTTGCGGTAAACGTTTTAAACAGATAAGTCATTTAAATGGTCACGTTGTTGTTCATAGTAATTCAATGCCTTATCAGTGTGATTATTGCGATCGTCGCTGTAATAGATTGGACAATTTAAAAAAGCATATGCGTCTTCATACAAAAGacaaagaatga
Protein Sequence: MIEMENKLPVDTDWSSGNKYMKSSLHAFFTATKNNHNVVSLKKQIYLEEDKRNFQALKNMKNPEDLTNKDSDKINDEEASISSDVITTNHKSQPLNSTLTRTVNENAHIRSEIKDVHETLCRRGQIDVIEMPLEQTYFYKYFLVYEDLPSKFVVLHALQSNTAKEVANKLLDILSIIGAPQVLQSGNGRNFAEQIVKELRILWKDFIILHGNICKCEEDDNRDFKNLLKCWLNKNPDKSWYEGLKFIQIFQNSTYRCQNGKIPCDVLFGQNVHQEFQKLIIPKNAANDMWTEEEWINDTLNKKLNNTTTIENSTHTSENIISINTSDTDKNDNCHIEYHDISHNNHVNAHDDSIQFQKNSNSFKFVSVKSETFLDNLQMEDSICMEANIEEHNFNINNQNLTCKICNKQYMKLGHLKNHMKTHIKKRQFDCTLCNKKFHILKLYEKHMQQFHENPQQINSDIDCIKKDKINSKYTEINLSKKGSIETEEIPKTHKSIMKSYLSSNIVLNRTDKCIRSIKKSNPINGRQFPRKREENRISRLNGNPTLECSYCKQKFSFPSVLKRHMRSHTNERPYICKICNKSFKQLGHLSQHSLTHKDYKSIQCTTCCIKFESLDLLKTHSQLHQGESILKSKEIYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKICGKRFKQAGHVKSHMLVHTGERKFECTVCSKRFSLSNSLKKHMYIHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANIRPFECDICKATFVRKTNLQTHIASAHMNERPYACTICGKRFKQISHLNGHVVVHSNSMPYQCDYCDRRCNRLDNLKKHMRLHTKDKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01090135;
90% Identity: iTF_01235172;
80% Identity: -