Pdom006938.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polistes dominula
Gene Symbol
-
Assembly
GCA_001465965.1
Location
NW:2165308-2212121[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 0.0054 0.32 10.7 0.4 2 23 500 522 499 522 0.91
2 36 0.6 36 4.2 0.3 1 23 534 557 534 557 0.95
3 36 0.0097 0.58 9.9 4.3 1 23 570 593 570 593 0.94
4 36 0.00024 0.014 14.9 5.8 1 23 599 621 599 622 0.95
5 36 0.00046 0.027 14.0 0.6 2 23 628 650 627 650 0.94
6 36 0.0019 0.11 12.1 1.2 1 23 655 678 655 678 0.97
7 36 5.3e-07 3.2e-05 23.3 0.4 2 23 685 706 684 706 0.96
8 36 8.7e-06 0.00052 19.4 1.6 1 23 712 734 712 734 0.97
9 36 5.8e-05 0.0035 16.8 1.0 1 23 740 762 740 762 0.98
10 36 2.1e-05 0.0013 18.2 3.1 2 23 875 896 874 896 0.97
11 36 0.0004 0.024 14.2 4.4 1 23 898 921 898 922 0.96
12 36 0.011 0.66 9.7 0.4 1 20 926 945 926 946 0.96
13 36 0.0012 0.069 12.8 2.5 1 23 955 978 955 978 0.96
14 36 0.0019 0.12 12.1 2.0 2 23 985 1007 984 1007 0.95
15 36 0.01 0.61 9.8 0.2 1 23 1012 1034 1012 1034 0.96
16 36 0.0012 0.073 12.7 0.5 3 23 1042 1061 1041 1061 0.98
17 36 9.2e-06 0.00055 19.4 0.1 1 23 1067 1089 1067 1089 0.97
18 36 0.0016 0.095 12.3 0.4 1 23 1095 1117 1095 1117 0.97
19 36 1.7e-05 0.001 18.6 1.0 1 23 1188 1210 1188 1210 0.97
20 36 2.8e-06 0.00017 21.0 0.7 1 23 1216 1238 1216 1238 0.99
21 36 0.00019 0.012 15.2 1.0 1 23 1244 1266 1244 1266 0.98
22 36 0.0015 0.089 12.4 3.8 1 23 1272 1295 1272 1295 0.98
23 36 0.0026 0.16 11.7 0.8 1 23 1336 1358 1336 1358 0.96
24 36 5.3e-06 0.00032 20.1 1.3 2 23 1365 1386 1365 1386 0.98
25 36 1.8e-05 0.0011 18.5 2.4 1 23 1392 1414 1392 1414 0.96
26 36 6e-07 3.6e-05 23.1 1.7 1 23 1420 1442 1420 1442 0.98
27 36 1.2 74 3.2 0.2 2 23 1477 1499 1476 1499 0.92
28 36 0.00094 0.056 13.0 2.6 1 23 1505 1528 1505 1528 0.97
29 36 1.8 1.1e+02 2.7 2.0 3 23 1535 1555 1534 1556 0.95
30 36 0.0014 0.081 12.5 0.2 1 23 1561 1583 1561 1583 0.98
31 36 0.27 16 5.3 1.3 1 23 1589 1611 1589 1612 0.95
32 36 0.00034 0.02 14.4 2.5 1 23 1634 1657 1634 1657 0.93
33 36 0.0048 0.29 10.8 0.1 1 23 1668 1690 1668 1690 0.95
34 36 0.11 6.7 6.5 3.9 1 11 1696 1706 1696 1718 0.80
35 36 7.7e-07 4.6e-05 22.8 1.2 1 23 1724 1746 1724 1746 0.98
36 36 4.9e-05 0.003 17.1 0.2 1 21 1752 1772 1752 1773 0.96

Sequence Information

Coding Sequence
ATGTCTTCCCTCAACTATCTCGACTTGTGTCGACTCTGTCTCGTGAAGGAACGTGTTACTGTGCCGATTTTTGAGGGCGAGGGTGATACAAGACAAATTTATCTCAAAATAACCGCCTGCCTACCGGTCAAGGTCGATAGAGAAGACAAGTTACCTAAGAAAATATGTAATGACTGTGTGTATaaagtagaatttatttatgactTTTGGAATACATCTGCTAGTTCACAAAAGAAATTCTTAGAATGGTTGGGAGAAGATGGATTGGAGGACAAATCAAATTATGCTACAAATGTTCTCAATCAGAACATAATGAAATCAGATCCAAACGCTGGTAACAGATTAGATGGAAGTATGATGCAGCAAGTAAATGAACATCAAAACAATATGGGTATGGGTATGATGGACAACATGAATCTAAATATCCCCATGATAATGTCCTCGACCAATCAACAACAAATAACCTCAGTTCCTATGGACACAAGCATTAGTTCAGTACAATCTGTACAAGAAATGCCTGGTACAAGTACTCAATCTACGCATGaacaaatcacacaaaatCAAACTAACACGAGTAatcaacaagaagaagaagaagagagtagtgaagaagaagaaaactcgGAAGATGAATGTGATGGAGATGaaggcCTACctgttaaagaagaaaatgaagaagatccCAACAATAGCAGAGTCATTGAACCAACAACATTTGTAAACGTTTCATTAGCTTGTGATGAAGCTGGACCTTCCGGACTTCAACAACAGAAAGTTACTGAGATACCTGAAATAGCAATGCAACAATCTGCAGAAGGAGATCCCAAATCTggATTTGATCACGAGGCTACTTACGACTCTCGCGGTATTTTCTTCTACGATAAAGAATCGGTGGTAATGAGGAAATGGCAGATTTTAGAGTTTGATGGAAAGCCGTATTATGCATTTGTACCGGAGGATGATGTACCGTTACCAGACGATAATATTCCTGAAGAATTGGAGGAGATTATAAAGAATGATGAAGaatttttgaaagaagaagggaacGAAGTGGAAGATGaattagaagaagataaagaatacAATAAGGAAACAAAAGTGGAATGCTTTTATACAGAAGAAAGTTTACAATATGATTCTATAGATGAGAACCtttatgaagaagaaaatatttttaatggagATTACGAGcaaaaggtagaagaagaggatgTAAAaccgattttatttaatggtaGTAACAGTGTAGATAATAGAAACACGGTGGGAGATTTATATCAGTTGAAACTTCAAGGTAGCACAGTAACTCTCGAAAAGCTTTTCTCTACAGATGTCAATGAAAaatctgaaaatatttttctaactgAGGAAACTTATAACAAAGATActgaagaagatgaaggtgAAGTAGAATATCTGGAAAGTGAAATCATAGGATCTATGAATGATCCTTTATCTCCaacgaaaagtaaaaaaaaagtttcgaaCACTGCATTAAAATGTAAACTCTGTTCGGAGATGTTCAACTCAGCTATATCCTTTCGAAAGCATGTTGCGTGGactcacaaaaaaaaagtgtgtatAAAGGAGGATGGTGCTTACATATGCGCTGTGTGTGATTATAGAACATTAAAGAAAAGCTTATTCGCAGCACATCTTGAAAGAAAACACGAAACCTGGTCTAGAAAACGACAGAACAATCTAGTATTTCCTTGTGATGTTTGCGGATTCGAATGTAGGTCCAAACACTCATTACAGTCACACTTTATAAGAAAACATACTGATCGATATGAACATCAATGCAAATTTTGtccaaaaaaatttaaagttaAGGGTGATCTTACGAATCACGTAAGATTTCATCATAAAGAAAAACCATTAAATTGTAACGTTTGTGGAAAGGTTTGTCAAAATAGTGGTTCTCTTTATGTTCATCAAAAATGGGCTCATTATAAACCGAAATATGAATGTCATATTTGTAAAAGACGAATGGTGACTCAGGAAAATCTTGATCAACATCTTTTAATGCAacatgaaaaaagagaaaaaatcgtATGCGCGGAATGTGGTAAAACCTTCACAAAAAAAGACTCTTTCAAGAGACATATGGCTGTTCATACTGGGTGCAAACCGCATTCTTGTCTCATTTGTAAAAAACCTTTCGCAAGAAGATCGCAACTAAGACAACACTTGCTAATACACACAGGAAAGAGACCATTTGTTTGTGACATTTGTGGAAAAGCTTTCACCCAAAAACCAGGTCTAATTTGTCATAGAAAGACACATCCTGGTCCACATCCACCATTACCTGTGATGCCAATCGCTGATATTGTTAAGGAATTTACTGAGGAATATGTTCAAGAAATCAATGCTCGTGAAAATGATGAGAGAGTTATTGAGGAAACATAAATATCCGATCCATTGAGTGTGGACATTAAATCCGCTCATCTGTCTTCATTGAAACTTGAATATGACGAACACAACAAAACAAGATCTTTGAAACAAGCTGATAACGAGGATAACTCTCTCAAAAAAATATCTGTTCTCTTTGTAGATCGTTTCAAAGATGAAAGTACATTAAATATCAAAGgaaattcaaaaaagaaagtagataAAAACGTGGAATGTGATCATTGTCAACGAagattcagaaaaaaaagtaatctaaTAGAACACTTAAAACAACACAAACATAAATGTACCGATTGTTCGAAGACATTTAGTCTTCGACGTTATTTAATCTCTCACATTGAGAGAATTCATCATCGTCAGATCTACGAGTGTAGCGTTTGCgagtataaaagtaataacaaaGGTACCCTGAAGaatcattatatttgtttacacACTAATAGTTATGATTATTCCTGCGATACCTGTGGCAAATTATTCAAGATCAAGAAGGCTTTGAATCACCATGTTAAACAAAATCACAGTGGTGCACCACCCATTGTATGCGATGTTTGTGGGCACTTCAGCAAAAACCTTCATGCATTGAAAGCTCATATGAAATACAGACATTATAAACCTGAGTTCGTGTGTCGTATTTGTAGACGCGGTATGACCACTCGTGAAAATCTTGAACAACACTTAGCTTGGCACGAGAACAGAGAAAAGGTTCTCTGTCCTACATGTGGAAAAAGATTTCGAGGTCGTGACCTCGATTCTCACATGCGAATACATACTGGTGTCAAGCCTTTTCCCTGTCCAGTTTGCGGTAAATCTTTTAGAAGACAAACTGCTCAAGAACAACACGTTCTTATACACACTGGAAAAAGACCTTACATTTGTGATATTTGTGGACAAGCTTTTGCACAAAAACCTGGCCTAATTTGTCATAGAAAAAGACATCCTGGTCCTTTACCACCTCTACCTGTAGTATCTGTCAAAAGTATAGTTACTGAATTCACTAGGGAATATTCAACGAAAAATACGATAAAGATAGAGcaacagaagaagaaatcgCAAGGTATGCATGAATGTATCAAGTGTCGTGCTCGTTTCTGTCACATGATGAAATTAGTcgaacatttgaaaaatcttcATAGCATTGAACGCGCATTCCATTGCGACGAATGTGGAAAAGCTTTTCGTAGTCCAATGAACATAACACGTCACAAACTGATTCATACAggtcaaaaaaaatttacttgcGATATTTGCGATTATGCTTCtaatcaaaaatcaaatttggaGTCTCATCTTCGCAGGCATAGAAAGGATTACGTTTACAAATGCGAAAAGTGTAATAAAGGATTCTTCGATAAGGCAGAATATGAAGAACATTTTAATGTAcacataaaagataaattttatcaatgtgaatactgtaaaaaattgtatttatataaaaaaaacttgaataGGCATTTGAAAACTCAACATGCGAATTTATCGTCTAATACGAATGTTCTAAGTCCAACAACAAACAAACTCATTGACAAAAGCTACTTGTCCGATGAAAAgttgttaaaaaacaaatcttctAAGATAATCACTAGGAAGTATCTTTGTGATTTGTGTGGTAAAGCGTTGTCCTCGCATAATAGACTGGCGATTCATAGACGTATGCATACTGGTGAAAAAATAGCCAAGTGTGAAATGTGTGCTAAGAAATTTACTAGtaaagagaatttaaaaattcatttgcgAATTCACACTGGAGAAAAACCACACATTTGCTCCGAATGTGGTAGACGTTTTACACAAAGAACATCTCTGGTTATGCATCTTCGTTATCATTCGGGAGATAGACCATTTAAATGTCCTGATTGTGATAAGAGTTTTATTTCCAGTACGTTTCTTAAGAACCATCGTAAAGTACATGACAAGGACTCTACCAATACTAAAAAAGTACTTGTAACGGACAGTAATCCTTTAGAATTAGACCCattgatttaaaaacaaaaatctgatACGAATGAGAAAGTCTGTGATATATGCAAACAAAAATTCCTTTTTGTAACAAGACTGGTTGCTCATCTAAGGATTATTCATGGGATTCATCGACCATTTAAATGTATGATTTGTGAGAAAAACTATCCTCAACAATTTATGCTAAATGCTCACGTAAAAAAATGTCACACACCAAAAACTGTACTGTGTACTCAATGTACCTTTATGGGCGTTGATACGAGTGACGTAGAAAGACATAAAAAGCGTCATCATCGAGAAGAAAAGTTTACTTGTGAGATTTGTAGCGAGATATTTACCGAGAAAGATGTACTTATCACTCATACGTCTATGCATAATTTTATGAAGCATCATCAGTGTAATGCATGCGGTGGAATATTTAATGATGTTTTAAgCTTAAAAGAACATAATCGTTTGCATCATTACGATCCCAACAGTGTAATGACAGACAACAAGCACATGCGATCGGATTGTCAAAGTTCGGATCACAAATGTGAAATTTGtggaaaaatgttcaaatacaaatcaattttaaaacaacATAAAGTGAAGGCCCACGGTAACTGGTTGAACTACGAGAGACGTCGATATCTTTGTGCTTTGTGTGGCAAGGAACTAAAAACAGCAAAAGGTCTCGAGATTCATAACAGATCTCATACAGGTGAAAAACCATACACGTGCGAAATTTGCGGCAAGTGTTTTACTTGCGAAACTATTTTAAGGACTCACAACGTCACACACAcgggtgaaagaaaatatacatgtgATCAGTGTGGTAAAGCATTCACGCAAAGATCCACACTTGTCGTTCATAAAAGATATCACTCAGGTGAAAGGCCTTACGTGTGTTCTCAATGTGGCAAGGGTTTCGTCACTAGAACGGTTTTGAATACTCATATGAAATCGTgtcgataa
Protein Sequence
MSSLNYLDLCRLCLVKERVTVPIFEGEGDTRQIYLKITACLPVKVDREDKLPKKICNDCVYKVEFIYDFWNTSASSQKKFLEWLGEDGLEDKSNYATNVLNQNIMKSDPNAGNRLDGSMMQQVNEHQNNMGMGMMDNMNLNIPMIMSSTNQQQITSVPMDTSISSVQSVQEMPGTSTQSTHEQITQNQTNTSNQQEEEEESSEEEENSEDECDGDEGLPVKEENEEDPNNSRVIEPTTFVNVSLACDEAGPSGLQQQKVTEIPEIAMQQSAEGDPKSGFDHEATYDSRGIFFYDKESVVMRKWQILEFDGKPYYAFVPEDDVPLPDDNIPEELEEIIKNDEEFLKEEGNEVEDELEEDKEYNKETKVECFYTEESLQYDSIDENLYEEENIFNGDYEQKVEEEDVKPILFNGSNSVDNRNTVGDLYQLKLQGSTVTLEKLFSTDVNEKSENIFLTEETYNKDTEEDEGEVEYLESEIIGSMNDPLSPTKSKKKVSNTALKCKLCSEMFNSAISFRKHVAWTHKKKVCIKEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRQNNLVFPCDVCGFECRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPLNCNVCGKVCQNSGSLYVHQKWAHYKPKYECHICKRRMVTQENLDQHLLMQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGCKPHSCLICKKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEEYVQEINARENDERVIEET*ISDPLSVDIKSAHLSSLKLEYDEHNKTRSLKQADNEDNSLKKISVLFVDRFKDESTLNIKGNSKKKVDKNVECDHCQRRFRKKSNLIEHLKQHKHKCTDCSKTFSLRRYLISHIERIHHRQIYECSVCEYKSNNKGTLKNHYICLHTNSYDYSCDTCGKLFKIKKALNHHVKQNHSGAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTRENLEQHLAWHENREKVLCPTCGKRFRGRDLDSHMRIHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYICDICGQAFAQKPGLICHRKRHPGPLPPLPVVSVKSIVTEFTREYSTKNTIKIEQQKKKSQGMHECIKCRARFCHMMKLVEHLKNLHSIERAFHCDECGKAFRSPMNITRHKLIHTGQKKFTCDICDYASNQKSNLESHLRRHRKDYVYKCEKCNKGFFDKAEYEEHFNVHIKDKFYQCEYCKKLYLYKKNLNRHLKTQHANLSSNTNVLSPTTNKLIDKSYLSDEKLLKNKSSKIITRKYLCDLCGKALSSHNRLAIHRRMHTGEKIAKCEMCAKKFTSKENLKIHLRIHTGEKPHICSECGRRFTQRTSLVMHLRYHSGDRPFKCPDCDKSFISSTFLKNHRKVHDKDSTNTKKVLVTDSNPLELDPLI*KQKSDTNEKVCDICKQKFLFVTRLVAHLRIIHGIHRPFKCMICEKNYPQQFMLNAHVKKCHTPKTVLCTQCTFMGVDTSDVERHKKRHHREEKFTCEICSEIFTEKDVLITHTSMHNFMKHHQCNACGGIFNDVLSLKEHNRLHHYDPNSVMTDNKHMRSDCQSSDHKCEICGKMFKYKSILKQHKVKAHGNWLNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEICGKCFTCETILRTHNVTHTGERKYTCDQCGKAFTQRSTLVVHKRYHSGERPYVCSQCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01232524;
90% Identity
iTF_01232524;
80% Identity
-