Pcan000794.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polistes canadensis
Gene Symbol
-
Assembly
GCA_001313835.1
Location
NW:840784-888336[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 0.005 0.31 10.7 0.4 2 23 498 520 497 520 0.91
2 36 0.56 35 4.2 0.3 1 23 532 555 532 555 0.95
3 36 0.2 13 5.6 3.7 1 23 568 591 568 591 0.93
4 36 0.00022 0.014 14.9 5.8 1 23 597 619 597 620 0.95
5 36 0.0073 0.46 10.2 0.7 2 23 626 648 625 648 0.94
6 36 0.0018 0.11 12.1 1.2 1 23 653 676 653 676 0.97
7 36 5e-07 3.1e-05 23.3 0.4 2 23 683 704 682 704 0.96
8 36 8.1e-06 0.00051 19.4 1.6 1 23 710 732 710 732 0.97
9 36 5.5e-05 0.0034 16.8 1.0 1 23 738 760 738 760 0.98
10 36 2e-05 0.0013 18.2 3.1 2 23 873 894 872 894 0.97
11 36 0.00041 0.026 14.1 4.5 1 23 896 919 896 920 0.96
12 36 0.01 0.65 9.7 0.4 1 20 924 943 924 944 0.96
13 36 0.0011 0.067 12.8 2.5 1 23 953 976 953 976 0.96
14 36 0.0018 0.11 12.1 2.0 2 23 983 1005 982 1005 0.95
15 36 0.0095 0.59 9.8 0.2 1 23 1010 1032 1010 1032 0.96
16 36 0.0011 0.071 12.7 0.5 3 23 1040 1059 1039 1059 0.98
17 36 8.6e-06 0.00054 19.4 0.1 1 23 1065 1087 1065 1087 0.97
18 36 0.0015 0.093 12.3 0.4 1 23 1093 1115 1093 1115 0.97
19 36 1.6e-05 0.00098 18.6 1.0 1 23 1186 1208 1186 1208 0.97
20 36 2.6e-06 0.00017 21.0 0.7 1 23 1214 1236 1214 1236 0.99
21 36 0.00029 0.018 14.6 1.0 1 23 1242 1264 1242 1264 0.98
22 36 0.0014 0.087 12.4 3.9 1 23 1270 1293 1270 1293 0.98
23 36 0.0027 0.17 11.5 0.6 1 23 1334 1356 1334 1356 0.96
24 36 9.6e-06 0.0006 19.2 1.0 3 23 1364 1384 1363 1384 0.97
25 36 1.6e-05 0.001 18.5 2.4 1 23 1390 1412 1390 1412 0.96
26 36 5.6e-07 3.5e-05 23.1 1.7 1 23 1418 1440 1418 1440 0.98
27 36 4.9 3.1e+02 1.3 0.2 2 23 1473 1495 1472 1495 0.90
28 36 0.00088 0.055 13.0 2.6 1 23 1501 1524 1501 1524 0.97
29 36 1.7 1e+02 2.7 2.0 3 23 1531 1551 1530 1552 0.95
30 36 0.00016 0.0097 15.4 0.1 1 23 1557 1579 1557 1579 0.98
31 36 0.0088 0.55 9.9 2.1 1 23 1585 1607 1585 1608 0.95
32 36 0.0013 0.081 12.5 2.4 1 23 1630 1653 1630 1653 0.93
33 36 0.0045 0.28 10.8 0.1 1 23 1664 1686 1664 1686 0.95
34 36 0.13 8 6.2 3.1 1 11 1692 1702 1692 1714 0.83
35 36 1.1e-06 6.7e-05 22.2 1.1 1 23 1720 1742 1720 1742 0.98
36 36 4.6e-05 0.0029 17.1 0.2 1 21 1748 1768 1748 1769 0.96

Sequence Information

Coding Sequence
ATGTCTTCCCTCAACTATCTCGACTTGTGTCGACTCTGTCTCGTGAAGGAACGTGTTACTGTGCCGATTTTTGAGGGCGAGGGTGATACAAGACAAATTTATCTCAAGATAACCGCCTGCCTACCGGTCAAGgtTGATAGAGAAGACAAGTTACCTAAGAAAATATGTAATGACTGCGTGTATAaagtagaatttatttatgacTTTTGGAATACGTCTGCTAGTTCACAAAAGAAATTCTTAGAATGGTTGGGAGAAGATGGTTTGGAAGACAAACCAAATTATGCTACAAATGTTCTCAATCAGAACATAATGAAATCAGATCCAAACGGTGGTAACAGATTAGATGGAAGTATGATGCAGCAAGTAAGCGAGCATCAAAACAATATAGGTATGGGTATGATGGACAACATAAATCTGAGTATCCCCATGATAATGTCCTCGACCAATCAACAACAAATAACCTCAGTTCCTATGGACACAAGCGTTAGTTCTGTACAATCTGTGCAAGAAATGCCTGGTACAAGTACTCAATCTACGCACGAACAAATCACACAAAGTCAAACTAACACGAGTAATcaacaagaagaagaggaagagagtagcgaagaagaagaaaattcggAAGATGAATGTGATGGAGATGaagGCCTACctgttaaagaagaaaatgaagaagatccGAACAATAGCAGAGTTATTGAACCAACAACATTTGTAAACGTTTCATTAGCCTGTGATGAAGCTGGACCTTCGGGACTTCAACAACAGAAAGTTACTGAGATACCTGAAATGGCAATGCAACAAAATGCAGAAGGAGATCCTAAATCTGGATATGATCACGAGGCTACTTACGACTCTCGCGGTATTTTCTTCTACGATAAAGAATCAGTGGTAATGAGGAAATGGCAGATTTTAGAGTTCGATGGAAAGCCGTATTATGCATTTGTACCAGAGGATGACATACCTTTACCAGACGATAATATTCCTGAAGACTTGGAGGAGATCACAAAGAATGGCGAAGAATTTTTGAAAGAAGGGGACGAAATGGAAGATGAATTAGAAGAAGgtgaagaatataataaagaatcaAAAGATGAATGCTTTTATGCAGAAGAAAGTTTACAATATGATTCAATAGATGAGAACCTTTATGaagaaggaaatatttttaataggaatTACGagcaaaaggaagaagaagaggatgtaAAACCGATTATACTTAATGGTAGTAACAAAATAGATAGTAAAAACACGGTAGGAGATTTATATCAGTTGAAACTTCAAGGTAGCACAGTAACTCTCGAAAAGCTTTTCTCTACAGATGCCAACGTAAAATCTgaacatatttttcaaactGAGGAAACTTATAACAAAGATGCTGAAGATGAAGGAGAAGTAGAATATCTCGAAAGTGAAATCTTAGAATCTACGGATGATCCTGTATCTCCaacgaaaagtaaaaaaaaagtttcgaacACTGCATTAAAATGTAAACTCTGTTCGGAGATGTTTAACTCAGCTATATCTTTTCGAAAGCATGTTGCGTGGactcacaaaaaaaaagtgtgtaTAAAAGAGGACGGTGCTTACATATGCGCTGTGTGTGATTATAGAACATTAAAGAAAAGCTTGTTCGCAGCacatcttgaaagaaaacacgAAACTTGGTCTAGGAAACGACAGAACAATGTATTATTTCCTTGTGCTGCTTGCGGATTCGAATGTAGGTCCAAACACTCATTACAGTcacattttataagaaaacatACAGATCGATATGAACATCAATGCAAATTTTGTCCCAAAAAGTTTAAAGTTAAGGGTGATCTCACGAATCACGTAAGATTCCATCATAAAGAAAAACCATTAAATTGTAACGTTTGCGGAAAGCTCTGTCAAAACAGTGGTTCTCTTTATGTTCATCAGAAATGGGCTCATTATAAACCGAAATACGAATGTCATATTTGTAAAAGACGAATGGTGACTCAGGAAAATCTTGACCAGCATCTTTTAATGCAacatgaaaagagagaaaaaatcgtATGCGCGGAATGTGGTAaaaccttcacaaaaaaagattcttttaaGAGACATATGGCTGTCCATACTGGATGCAAACCGCATTCTTGTCTAATTTGTAAAAAGCCTTTTGCAAGAAGATCACAACTAAGACAGCACTTGCTAATACACACAGGAAAGCGACCATTTGTTTGTGACATTTGTGGAAAAGCTTTTACTCAAAAACCAGGTCTAATTTGTCACAGAAAGACACATCCTGGTCCTCATCCACCATTACCTGTGATGCCAATCGCTGACATCGTTAAGGAATTTACTGAGGAATATGTTCAAGAAATCAATGCTCGTGAAAATGATGAGAGATTTGTTGAGGAAACATAAATATCCGATCCATTGAGTGTGGACATTAAATCCGCTCATCAGTCTTCATTGAAACTTGAATACGACGAACACAACGAAACAAGATCCTTGAAACAAGCTGATAACGAGGATATCtctcaaaaagaaatatctgtTCTCATTGTAGATCGCTTCAAAGATGAGAGTACATTAAATATCAAAGGAAATTCGAAAAGGAAAGTAGATAAAAACGTGGAATGTGATCATTGTCAACGAAgattcagaaaaaaaagtaatctgATAGAACACTTAAAACAACACAAACATAAATGTACCGATTGTTCGAAGACATTTAGTCTTCGACGTTATTTAATCTCTCACATTGAGAAAATTCATCATCGTCAGATCTACGAGTGTAGCGTTTGCgagtataaaagtaataacaaAGGTACCCTGAAGAATCATTATATTTGTCTGCACACCAACAGTTATGATTATTCCTGTGATACCTGTGGCAAATTATTCAAGATCAAAAAGGCTTTGAATCATCATGTTAAACAGAATCACAGTGGCGCACCGCCCATTGTATGCGATGTTTGTGGACACTTCAGCAAGAATCTTCATGCATTGAAGGCTCACATGAAGTATAGACATTATAAACCTGAGTTCGTGTGTCGTATTTGTAGACGCGGTATGACCACTCGTGAAAATCTTGAACAACACTTAGCTTGGCACGAGAACAGAGAAAAGGTTCTCTGTCCTACATGTGGGAAAAGATTTCGAGGTCGTGATCTTGATTCTCACATGCGAATACACACTGGTGTTAAACCTTTTCCCTGTCCAGTTTGTGGTAAATCTTTTAGAAGACAAACTGCTCAAGAACAACACGTTCTTATACACACCGGAAAAAGACCTTACATTTGTGATATTTGTGGACAGGCTTTTGCACAAAAACCTGGCCTAATTTGTCATAGAAAAAGACATCCTGGTCCTTTACCACCTCTACCTGTAGTGTCTGTGAAAAGTATAGTTACTGAATTCACTAGAGAATATTCAacgaaaaatacgataaagatagaGcaacagaagaagaaatcgCAAGATATGCATGAGTGTATCAAGTGCCGTGCTCGTTTCCGTCACATGATGAAATTAGTCgaacatttgaaaaatcttCATAGTATTGAACGTGCATTCCATTGCGACGAATGTGGAAAAGCTTTTCGTAGTCCAATGAACATAACACGTCACAAACTGATCCATACtggtcaaaaaaaatttacttgCGATATTTGCGATTACGCTTCTAATCAAAAATCAAACTTGGAGTCTCATCTTCGTAGGCATAGAAAGGATTACGTTTACAAGTGTGAAAAGTGTAACAAAGGATTCTTCGATCGGGCAGAATATGAAGAACATTTTAATGTACatgtaaaagataaattttatcaatgtGAATActgtaaaaaattgtatttatataagaaaaacttGACTAGGCATTTGAAAACTCAACATGTGAATTTATCGTCTAATACAAATGTTCTAAGTCCAACAACGAACAAACTCATTGGCAAAATCTACTTGTCCGATGAAAagttgttaaaaaacaaatcttctAAAGTAATCACTAGGAAATATCTTTGTGATTTGTGTGGTAAAGCGTTATCCTCGCATAATAGACTGGCGATTCATAGACGTGTACATACAGGTGAAAAAATAGCCAATTGTGAAATGTGTGCTAAGAAATTTACTAGTaaagagaatttaaaaattcatttgcgAATTCACACTGGAGAAAAACCACACATTTGCTCCGAATGTGGTAGACGTTTTACACAAAGAACATCTTTGGTTATGCATCTTCGTTATCATTCGGGAGATAGACCATTTAAATGTCCTGATTGTGATAAGAGTTTCATTTCCAGTACGTTTCTTAAGAACCATCGTAAAGTACATAACAAGGGCTCTATCAACATTGACAAAATGATacaatcaaaatttaataatttcattgtcaTATCGCATTTTTACAGATACGAGATGAACGAGAAAGTCTGTGATCTATGCGAACAAAAATTCCTCTTCGTAACAAGATTGGTTGCTCATCTAAGAATTATTCATGGGATTCATCGACCATTTAAATGTATGATCTGTGAAAAAAACTACCCTCAACAATTTATGCTAAATGCTCATGTAAAAAAATGTCACACACCAAAAACTGTACTGTGTACGCAATGTACCTTTATGGGCGTTGATACGAGTGACGTAGAGAGACATAAAAAGCGTCATCATCGAGAAGAAAAGTTTACTTGTGAGATATGTAGTGAGATATTTACTGAGAAAGATGCACTCATCGCTCATACGACTATGCATAATTTTATGAAGCACCATCAGTGTAATGCATGTGGTGAAACATTTAATGATGTTTTAAGcTTGAAAGAACATAATCGTTTGCATCATTACGATCCCAATAGTGTAATGATAGACAACAAGCACGTGCAATCGGATCGTCAAAGTTCGGATCACAAATGTGAAATTTGTGGAAAAATGTACAAATACAAATCCATTTTAAAACAGCACAAAGTGAAGGCCCACGGTAACTCGTTGAACTACGAAAAACGTCGATATCTTTGTGCTTTGTGTGGCAAGGAACTAAAAACAGCAAAAGGTCTGGAGATTCATAACAGATCACATACAGGTGAAAAACCATATACGTGCGAAATTTGCGGCAAGTGTTTTGCTTGCGAAACTATTTTAAGGACTCATAATGTCACCCACACgggtgaaagaaaatattcatgtGATCAATGTGGTAAAGCATTCACGCAAAGATCCACACTTGTTGTTCACAAAAGATATCATTCAGGTGAAAGACCCTATGTGTGTTCTCAGTGTGGTAAGGGTTTCGTCACTAGAACGGTTTTGAATACTCACATGAAATCGTGTCGATGA
Protein Sequence
MSSLNYLDLCRLCLVKERVTVPIFEGEGDTRQIYLKITACLPVKVDREDKLPKKICNDCVYKVEFIYDFWNTSASSQKKFLEWLGEDGLEDKPNYATNVLNQNIMKSDPNGGNRLDGSMMQQVSEHQNNIGMGMMDNINLSIPMIMSSTNQQQITSVPMDTSVSSVQSVQEMPGTSTQSTHEQITQSQTNTSNQQEEEEESSEEEENSEDECDGDEGLPVKEENEEDPNNSRVIEPTTFVNVSLACDEAGPSGLQQQKVTEIPEMAMQQNAEGDPKSGYDHEATYDSRGIFFYDKESVVMRKWQILEFDGKPYYAFVPEDDIPLPDDNIPEDLEEITKNGEEFLKEGDEMEDELEEGEEYNKESKDECFYAEESLQYDSIDENLYEEGNIFNRNYEQKEEEEDVKPIILNGSNKIDSKNTVGDLYQLKLQGSTVTLEKLFSTDANVKSEHIFQTEETYNKDAEDEGEVEYLESEILESTDDPVSPTKSKKKVSNTALKCKLCSEMFNSAISFRKHVAWTHKKKVCIKEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRQNNVLFPCAACGFECRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPLNCNVCGKLCQNSGSLYVHQKWAHYKPKYECHICKRRMVTQENLDQHLLMQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGCKPHSCLICKKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEEYVQEINARENDERFVEET*ISDPLSVDIKSAHQSSLKLEYDEHNETRSLKQADNEDISQKEISVLIVDRFKDESTLNIKGNSKRKVDKNVECDHCQRRFRKKSNLIEHLKQHKHKCTDCSKTFSLRRYLISHIEKIHHRQIYECSVCEYKSNNKGTLKNHYICLHTNSYDYSCDTCGKLFKIKKALNHHVKQNHSGAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTRENLEQHLAWHENREKVLCPTCGKRFRGRDLDSHMRIHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYICDICGQAFAQKPGLICHRKRHPGPLPPLPVVSVKSIVTEFTREYSTKNTIKIEQQKKKSQDMHECIKCRARFRHMMKLVEHLKNLHSIERAFHCDECGKAFRSPMNITRHKLIHTGQKKFTCDICDYASNQKSNLESHLRRHRKDYVYKCEKCNKGFFDRAEYEEHFNVHVKDKFYQCEYCKKLYLYKKNLTRHLKTQHVNLSSNTNVLSPTTNKLIGKIYLSDEKLLKNKSSKVITRKYLCDLCGKALSSHNRLAIHRRVHTGEKIANCEMCAKKFTSKENLKIHLRIHTGEKPHICSECGRRFTQRTSLVMHLRYHSGDRPFKCPDCDKSFISSTFLKNHRKVHNKGSINIDKMIQSKFNNFIVISHFYRYEMNEKVCDLCEQKFLFVTRLVAHLRIIHGIHRPFKCMICEKNYPQQFMLNAHVKKCHTPKTVLCTQCTFMGVDTSDVERHKKRHHREEKFTCEICSEIFTEKDALIAHTTMHNFMKHHQCNACGETFNDVLSLKEHNRLHHYDPNSVMIDNKHVQSDRQSSDHKCEICGKMYKYKSILKQHKVKAHGNSLNYEKRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEICGKCFACETILRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHSGERPYVCSQCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01233134;
90% Identity
iTF_01233134;
80% Identity
-