Pdom008817.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polistes dominula
Gene Symbol
Hr39
Assembly
GCA_001465965.1
Location
NW:1040339-1044168[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 2.1 6.6e+03 -4.8 6.2 138 163 58 81 24 122 0.58
2 5 1.2 3.8e+03 -4.0 8.0 43 163 244 386 223 403 0.65
3 5 3 9.5e+03 -7.3 8.8 78 139 414 495 392 530 0.38
4 5 7e-08 0.00022 19.8 0.1 1 21 599 619 599 623 0.93
5 5 5.7e-70 1.8e-66 224.4 0.0 201 408 774 994 618 994 0.74

Sequence Information

Coding Sequence
ATGTCGGAGCAAAACGGGCCCGGCGATGGCCCGGGACCTGGTCCAGGTTGGTGGCCTTCAACACAACCCTGGAAATCGTCTGGTTCCGTTGGATCTaactcgtcgtcgtcttctaCCTCCGGTACAAGCGTCGGCACCACTTCCGTTTCTGCCTCCTGCGCCACCGCCGCCGCCACCACCGCACCCTCCACCGGATCATCGGCCTCATCGGTTTCACCAACGTCCTCATCCACCTGTTGTTCTTCATCATCCATTGGCAATTCTTCCACGATGACCACAACTCGTTCCACGGAAACGGGGAAGAACGTTTCCGTAACTGCTATCAATGTCCCACCTACGCATCACGAAATGCACGATGGCAAAGGCATCTGTAAATATCTAGCAGGTCAAAATGGCGTGACGGTGTCCGTAGTTTCAAATTGCGGCTCGGTACTCGGCTGTACGAGTAGCACAAGCAACGTGGGCTCGCATGGTATCGGGATCGGTATTCTCAGTTCAAATGCCACGAATATCGACGACGCGGACGACAGCGACGGTGAAATAAGCAAGATCGACTTCCGCGGTGTCAATCTAAGAACCAAGAAGAAACGAGATATCTCCGTAAATCAGAGCGGTGAGAAAATCGGCGATTGCGATGGCGAAGGTGAAAGCGGAGCTTGCGACGGTAACGATACgtctcaacaacaacaaccagaGAGACCTATGTCATGGGAAGGAGAACTATCCGATCAAGAGATGTCTTCGAATACCCTAACTAATCAGGACGATCACGAAGAAACGTCGATGGAAGGTGTTCAAGTTTGTGGTTCCAGTCCTGGACCTATGGAACAAAAGTTTCCAATAAAGCCAGAACCAGATTTTCGATCGAGTTCAGGATACGCGCTTTCGGGAAATTTATCTTTAAGTCATAATCAACAATTACAGCAACAACGTGGTATAGAAAATCTTGAACAAACTCAACAGAGCGACTTACCTCTTCTCGTGGGAAAACTATTGGGTGGTTATAACAGTTCTACTCCAAATCACAGTCCTGTTCTTAATCCAAGACATCATTTGACCAAACACAGTCATACGCGATCGCAGGTACCATCACCAGATTCGGCTATTCATTCTGCATACAGTGTCTTCAGTTCACCGACTCAAAGTCCTCATGCTGCAAGACACTCCGCCTTGGGAGCAGGAAGCCCGATTCCTTCTTCCTCGCTTTCCTTATCTCGACATAGTTTCAATAATTCGACCTCCTCGTTGtcactctccctctctcattCGCTTTCACGTAACAATTCAGACGCTTCGAGCAGTTGTTACAGTTATGGCTCTTTGAGCCCACCTACGCATTCTCCCGTCCAGCAACCTCGACATCCGCACGCTCACTCGCAACATCAGCATCAACAAGTAGCACAAGGTAGTCCTTTACATCTTCCAACGGCTGCTTCTTCGGCTGTGAGCGCGCACCATTATTCCTCTTCCGCTCCAGGATCAGAACTTTCCTCGGATGGGCATCCTGGAACAGAAGATCAAGAAGACTGTAGAATACCTGCTGCACCATCTGGTATTTCCACGAGACAGCAGTTAATTAATAGCCCCTGTCCGATATGCGGTGATAAAATCAGTGGATTTCATTATGGTATATTTTCGTGCGAATCGTGCAAGGGCTTTTTCAAGAGGACCGTCCAGAATCGTAAAAACTATGTGTGCCTTAGGGGTGCAGGTTGTCCTGTCACCGTTGCCACAAGAAAGAAATGCCCTGCTTGTCGATTCGACAAGTGTCTCAATATGGGAATGAAACTCGAAGCTATCAGAGAGGATCGTACCAGAGGTGGTAGGAGCACTTATCAGTGTACATATACATTACCGACTAATTTCATCGGTAGTTCTGCAAACAATATGACGACTggtgataaaataaatgctgCTGGTAATTGTAGTCCTGCACCGCCCGGCAGTGAACATCATTATTCAGTCAGACATCATTCGAATCATTCATACAAAGTACATGTAGTTCCACAACTTTTGCAAGACATCATGGATGTAGAACATCTTTGGCATTATAATGACAGTGATCGTATAACTGGTATTCAGTCTGGTGTGATAACTTCGGGCGGAGCTAGAAATACTCCTGACAGTGACATGTTATTAGGAAGCGGAAACGGTGGTAATGTTTCTTCAGGTCGAAGTGGATCAGCTACCAACGGCTCTAGTACTGATTGTCCTACCAACGGACACGCtagtaacaatattaataacagaAGAGACGACAATACTGGAAGACCTTGTTCGACAGGTTCGACTTCGACAGGTAGTCACGAACAATTATCGGCTAACTCTGGCAACGTTGGCAATTGTAATTCTCGAATGTGCGGAAATTCTAATGGCAATCCATCTACACATCCGGACTTTATTTCGAATCTTTGCAATATTGCCGATCATCGTCTctataaaatagttaaatgGTGTAAAAGTTTGCCactattcaaaaatatttcaatcgacGATCAGATTTGTCTACTTATCAATTCATGGTGCGAGTTGCTGCTATTCTCTTGTTGTTTCCGCAGTATGAGTACTCCTGGTGAAATAAGAGTATCTCTCGGCAAGTCGATTACATTGGAACAGGCAAGACAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTAGCTTTCACTAATAATTTGAGAAGGCTGAGGGTGGATCAATACGAGTACGTTGCGATGAAGGTAATAGTATTACTGACATCTGACACAAGTGAATTGAAAGAACCTGACAAAGTTAGGGCTTCTCAAGAAAAAGCTTTGCAAGCACTTCAACAATATACTATTGCCAGGTATCCAGAAATGCCTGCTAAATTTGGGGAACTATTATTGAGGATTCCAGATTTACAAAGAACGTGTCAGGTAGGCAAGGAATTATTGAGTGCAAAACGTGCTGAAGGAGAAGGCAGTTCGTTTAACCTTTTAATGGAATTATTGCGAGGcgatcattaa
Protein Sequence
MSEQNGPGDGPGPGPGWWPSTQPWKSSGSVGSNSSSSSTSGTSVGTTSVSASCATAAATTAPSTGSSASSVSPTSSSTCCSSSSIGNSSTMTTTRSTETGKNVSVTAINVPPTHHEMHDGKGICKYLAGQNGVTVSVVSNCGSVLGCTSSTSNVGSHGIGIGILSSNATNIDDADDSDGEISKIDFRGVNLRTKKKRDISVNQSGEKIGDCDGEGESGACDGNDTSQQQQPERPMSWEGELSDQEMSSNTLTNQDDHEETSMEGVQVCGSSPGPMEQKFPIKPEPDFRSSSGYALSGNLSLSHNQQLQQQRGIENLEQTQQSDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHAHSQHQHQQVAQGSPLHLPTAASSAVSAHHYSSSAPGSELSSDGHPGTEDQEDCRIPAAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPTNFIGSSANNMTTGDKINAAGNCSPAPPGSEHHYSVRHHSNHSYKVHVVPQLLQDIMDVEHLWHYNDSDRITGIQSGVITSGGARNTPDSDMLLGSGNGGNVSSGRSGSATNGSSTDCPTNGHASNNINNRRDDNTGRPCSTGSTSTGSHEQLSANSGNVGNCNSRMCGNSNGNPSTHPDFISNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPDKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQVGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01513512;
90% Identity
iTF_01234404;
80% Identity
iTF_01233061;