Pcan004327.1
Basic Information
- Insect
- Polistes canadensis
- Gene Symbol
- nfxl1
- Assembly
- GCA_001313835.1
- Location
- NW:317324-321378[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.7 7.9e+03 -3.9 1.3 15 19 126 130 125 130 0.81 2 19 0.14 6.7e+02 -0.5 0.8 4 10 161 167 160 167 0.95 3 19 5.2e-08 0.00024 20.1 14.6 1 18 175 191 175 192 0.98 4 19 3.6e-09 1.7e-05 23.8 12.0 3 18 230 245 229 246 0.95 5 19 1.8 8.2e+03 -3.9 1.2 5 10 270 275 270 275 0.91 6 19 0.1 4.8e+02 -0.0 14.3 1 17 281 305 281 308 0.71 7 19 3.4e-05 0.16 11.1 7.2 1 18 335 352 335 353 0.96 8 19 0.0068 32 3.8 7.6 1 12 387 398 387 398 0.94 9 19 1.2 5.6e+03 -3.4 1.7 6 10 408 412 408 412 0.97 10 19 3.8e-07 0.0017 17.4 12.6 1 18 418 435 418 436 0.93 11 19 1.7 7.7e+03 -3.9 1.3 6 10 465 469 464 469 0.76 12 19 0.00048 2.2 7.4 10.6 10 19 485 494 483 494 0.94 13 19 0.00025 1.1 8.4 5.9 1 12 504 514 504 514 0.96 14 19 0.85 3.9e+03 -2.9 5.8 14 18 546 550 546 551 0.89 15 19 0.00015 0.69 9.1 4.0 1 11 587 597 577 598 0.90 16 19 0.63 2.9e+03 -2.5 1.6 6 10 614 618 613 618 0.88 17 19 0.0019 8.9 5.5 10.3 4 19 628 643 626 643 0.94 18 19 2.2e-06 0.01 14.9 10.0 1 16 688 702 688 708 0.90 19 19 1.4 6.4e+03 -3.6 0.6 6 10 738 742 737 742 0.86
Sequence Information
- Coding Sequence
- ATGCAAAAGTTTAAGCAAGCtcaagtagaaaataaaatgtctatTAGAAGACATTTAGAAGCGAATGCTTCTCTTGATTCGTCTAGCGAAGACGAAGACAATATTTGTGAGGAAGATATACAAAGGACGTTAGGTGAAGTTTTATCAGCCTATAATGGTGAACAATTAAACACAGAAAAGATTATGTCGTATTTGATAAACGTTTTTCAATCTGGTGGTGCTATCTGTTTAATATGTATTTCAACAGTAAAAAGAGCAGATCCCATATGGAACtgcaataaatgttattcttttATGCATTTGACGTGTATCCTACATTGGATTCGAGATACTCTAGCCCATAAACATGAACAAGGAATTATGCCAACTTGGACGTGTCCAAAATGTAGAACAGAATATGGAGAAGATGAAATTCCAAAAGTGTACAAATGTTTTTGCAAGAGAGTTGAAAATCCATCTAATCAAACGTGGATTATTCCGCATTCTTGTGGAGAAACTTGTGGGAAATATTTGGAACCTAGATGTGGACACAGATGTGTATTGTTATGTCATCCTGGACCATGTCCACCTTGTGCAAAAAcggtaataattaaatgttattgtGGAAAGCAGCCTGCCCGTCCATTGCGATGTAATATAAGTGGTTGGAGTTGTAATAACatatgcaataaaaaatacgatCAATGTAACCATACTTGTAAAGAAATTTGCCACGCTGGAGATTGTCCACCATGTATGGAAATTCTACCAACGGATTGTCGTTGTAAAAGCAGCagacaaatgaaaaattgcaACGAAGTTACTTGGACTTGTAATAAGTCTTGTAATAGGTTATTGTCTTGCAAAATACATACCTGTGAAGGTATTTGTCATTCTATTAATGATTGTGGAGATTGTCCAAAGAAATTTAGAACTTGTCCCTGCGGTAAAAACCGATATACAGTTTCATGTAAGGAACAACAATTACTCAAATGTGGAAGCACTTGTGGAAAATTACTAAATTGTGGTTTACACTATTGCAACATGACGTGTCATTTTGAACAATGTGGTCAATGCTTGGAGATGGTCATGAAATCGTGTAGATGTGGgaattttacaaaagaaatagcTTGTGGGAAAGAATTccactgtaataaaaaatgtactcAAAGAAGACTTTGTGGAAGGCATCTatgcaataaaaaatgttgcgATTGTTTAGTAAAAAATACCTTTAATATATGTGAAAAAGTATGCAACACTCTTCTTAATTGTCAGAAACATAAATGTCCAGCAGCTTGTCATAGTGGACCTTGCTACCCATGCGCTCGTACTGATATAATTCAGTGCaaatgtggtaataaaaagataacaatACCTTGtggaaccaaaaaaaaaattaagccACCACCTTGTAATAAGCCATGTAAAATACCTTCTATTTGTATTCATCCGGAGAGAGAGATCCATAATTGTCATCAAGGTCCTTGCCCACCatgtaaaaaaatgtgtggtttaattcataaaaaatgtGGACATAAATGTTTAGCTGTTTGTCATAGTAAGGTTTGGGTCAAAACGAGCTTAAATAGTATAGAAGGACAGCCCAAAGGACCATGGgaaaaacaaagatatatGATGGAATTAAAAACATTACCCTGTCCACCTTGTGAAGTTCCTATTAAAGTAGAATGTTTAGGTGGACACGAAACACGTATATTACCTTGCTATATCGCTAAAGCTGATTCTTGTGGAAGACCTTGTGGTCAATTACTAGAATGTACAAATCACACTTGTGAATTAATGTGCCATGCTGTAAAATTATCAGAaggaatgaataataataaacaatgtaTGCAATGTGAAAGACCATGCTCTTTCACACGTCCCAAAGAATGTTTTCATAAGTGTTTAAAATCTTGTCATCCCGCACCATGTGACTTATGTCAACAATTAGTACGTGTTTCTTGCCATTGTGGCATCAGTACTTTATATAGACGTTGCATAGATTTGACATCCGCAACAGTCAAGCAACGTGAAGAGCTGTTCAAGTGTGGAAATCAATGcccaaaaaatTATCCATGTGGCCATCGGTGCAATGATATTTGTCATCCTGGATTATGTAAAAAgtcaaataaatgtaataaaaaagtaaaactatGGTGTAAATGTAAACGCATTAAAAAGGAATATGTTTGTTCTgttatacaagaaaaaaaaattgtagttGAGTGTGATAGTGTTTGTCAGTCacttattaatgaaaaagataatgctaataaaatcaaagaaatacAACGTAAACGCGAAGAAGAATTACGTAATCAGGAAGAAATCGAAAAATTCCAAAGGAAATTTAAACCACGACGAAAAGCAAaggataaattgaaaaaagaattagcgaattcaaaagaagaaaatagtaaaatattcatattggTTTTGATATTGACCATTTTTATAGCTATCATAAGTATTATAGTAATCTATGCTAACCtaagttaa
- Protein Sequence
- MQKFKQAQVENKMSIRRHLEANASLDSSSEDEDNICEEDIQRTLGEVLSAYNGEQLNTEKIMSYLINVFQSGGAICLICISTVKRADPIWNCNKCYSFMHLTCILHWIRDTLAHKHEQGIMPTWTCPKCRTEYGEDEIPKVYKCFCKRVENPSNQTWIIPHSCGETCGKYLEPRCGHRCVLLCHPGPCPPCAKTVIIKCYCGKQPARPLRCNISGWSCNNICNKKYDQCNHTCKEICHAGDCPPCMEILPTDCRCKSSRQMKNCNEVTWTCNKSCNRLLSCKIHTCEGICHSINDCGDCPKKFRTCPCGKNRYTVSCKEQQLLKCGSTCGKLLNCGLHYCNMTCHFEQCGQCLEMVMKSCRCGNFTKEIACGKEFHCNKKCTQRRLCGRHLCNKKCCDCLVKNTFNICEKVCNTLLNCQKHKCPAACHSGPCYPCARTDIIQCKCGNKKITIPCGTKKKIKPPPCNKPCKIPSICIHPEREIHNCHQGPCPPCKKMCGLIHKKCGHKCLAVCHSKVWVKTSLNSIEGQPKGPWEKQRYMMELKTLPCPPCEVPIKVECLGGHETRILPCYIAKADSCGRPCGQLLECTNHTCELMCHAVKLSEGMNNNKQCMQCERPCSFTRPKECFHKCLKSCHPAPCDLCQQLVRVSCHCGISTLYRRCIDLTSATVKQREELFKCGNQCPKNYPCGHRCNDICHPGLCKKSNKCNKKVKLWCKCKRIKKEYVCSVIQEKKIVVECDSVCQSLINEKDNANKIKEIQRKREEELRNQEEIEKFQRKFKPRRKAKDKLKKELANSKEENSKIFILVLILTIFIAIISIIVIYANLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01233326;
- 90% Identity
- iTF_01234709;
- 80% Identity
- -