Pcan001564.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polistes canadensis
Gene Symbol
Trl
Assembly
GCA_001313835.1
Location
NW:267675-273143[-]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 7.3e-11 3.3e-07 29.4 0.2 17 44 305 332 300 336 0.92
2 3 2.3e-17 1.1e-13 50.2 0.0 14 49 421 456 417 460 0.92
3 3 0.078 3.6e+02 0.5 0.2 5 30 488 515 486 526 0.76

Sequence Information

Coding Sequence
ATGGGGAGCACCAGTCAGTTGTATAGTCTCTCATGGGGAGAATTCAGCTCGTCTTTGGCCTCTGCAGTACAATTACTTAGAGGACATGGAGATTTAGTCGATGTAACATTAGCAGCAGGAGGGCGTAGCTTTCCTGCACACAAGATAGTTCTATCGGCGGCAAGTCcatttttgctggatttactGAAGAGTACACCTTGTCAACACCCAGTAGTGATGCTAGCTGGTATAGGTGCAGATGATTTAGAATCATTATTGGAGTTTGTTTATCGAGGTGAAGTCAGCGTCGAACCATCTCAACTACCATCTCTGCTTCAAGCTGCTCATTGTTTGTGTATTCATGGTCTATCACCGCCGACAATATTAACCGAAagtGGCGAGGAAGTACCTGCATCTGCAATACCGGCAGCTAGTGAAGCTTTGTCTCGTGAAACTCTTAGTTCGTATTTCCCTttaaaaaggaggaaaaagagaagaaagtcTTCTTCATCGTCGGGAAAGTGGGCACGTGGAAGTATGACTAATGATAATGAAAACAGGCATTTAAATACGCACGCAGATGATCATGCTACTACAGATTATGATCCAAAAGATATCGATGCTCACCATGGTGATGACACAGCAGCAAGCGATCAGTTGGGATATACAAATCATCAGGATAGCCATTCACCTTCCTCCAAAGAGGCTAAGCGAGTAACAACCGAAAATTCTCAAGCAGGAGCTCAACAGGAACATACGTCAGATAGTGAACATCACTTACAGACAATGACGTCGATACAACAATATTCACCACTGCATATACCTCAGTTTCCTGGTTCAATGAACATGGGCTATCCACCAGGTGTACCGCTTTCTCTAACACAAGGATCAGCAGCCGGTACAGCTACGTGTAATATAGCAGGAAGTTTAAAAGTTCGTGGTGCTTCAGATTGTCCAGGCATGTGTCCACTTTGTGGTGCTACGTTACGTCAAGCAAGAAATTTACGCAGGCATCTTTTATCGTCTTGCAAGTGTCGATTTAGTAGTCATCCATTGCAAGGTCCATTGTCCGATTCAATGTTGATCGAAGTTAAACCAGAAGTAGAAGTAACGGAATACAGTGATCAATCAGCCAATCATGGGACTGACAGTGGGAATAATAGTGAacgaattatttgtaaacCCAGTCCGCTTCCTTCGCCGATATCGCGCGAATCTAATGTTGTATCCCCACACAGCAATGCACCGTCCTTCTTCATGGAATTCATTTTAGGAGATGGACAATCGAAAACAAGGAACATGTCAGATCAACCAATATCTTGTCCATTATGTGGTGCGATGTTACGCCAATCGAGGAACTTAAGAAGACATTTggaattattacattttggACTCGGCAATGGTAGCAAAGCTGGCCTACATGTGAGACATCGAAGGAACGACAGAGGCGGAAATTATTTTAGACCATCCTTGCCATGCATTCGTACACCGCACGCACCTAGAACGGACTCTCATCATCCAAGAGCTAACGAACATTCGGATTTCCCCACGATGACACCTTTATCTGTTCCTTCGACGGTGAGCTCTGGCAATCTCATGGGACCAGGTTCGAGTGTATTAGGATCAGCCGAACAGAACGCACATTCCATATCTACGGCTACTTCTTGCGGTGTATCCATGGGACCAGCCAACAACGGGATTTATACGTCAGATACCAGTGCCAGTATGCTTGGCTGTTTACTACCATCTTTGCCTTCACTGCCTTCTCTTTCATCTCCGCATGATGTTTTTCGACATGGTGAAATGTTACGAGCATATCATGATCCTTCGAGACAACATGCAAGACATTTGCAACGCACCGACGTTACCTAA
Protein Sequence
MGSTSQLYSLSWGEFSSSLASAVQLLRGHGDLVDVTLAAGGRSFPAHKIVLSAASPFLLDLLKSTPCQHPVVMLAGIGADDLESLLEFVYRGEVSVEPSQLPSLLQAAHCLCIHGLSPPTILTESGEEVPASAIPAASEALSRETLSSYFPLKRRKKRRKSSSSSGKWARGSMTNDNENRHLNTHADDHATTDYDPKDIDAHHGDDTAASDQLGYTNHQDSHSPSSKEAKRVTTENSQAGAQQEHTSDSEHHLQTMTSIQQYSPLHIPQFPGSMNMGYPPGVPLSLTQGSAAGTATCNIAGSLKVRGASDCPGMCPLCGATLRQARNLRRHLLSSCKCRFSSHPLQGPLSDSMLIEVKPEVEVTEYSDQSANHGTDSGNNSERIICKPSPLPSPISRESNVVSPHSNAPSFFMEFILGDGQSKTRNMSDQPISCPLCGAMLRQSRNLRRHLELLHFGLGNGSKAGLHVRHRRNDRGGNYFRPSLPCIRTPHAPRTDSHHPRANEHSDFPTMTPLSVPSTVSSGNLMGPGSSVLGSAEQNAHSISTATSCGVSMGPANNGIYTSDTSASMLGCLLPSLPSLPSLSSPHDVFRHGEMLRAYHDPSRQHARHLQRTDVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01233285;
90% Identity
iTF_01233285;
80% Identity
iTF_01232493;