Basic Information

Insect: Polistes canadensis
Gene Symbol: -
Assembly: GCA_001313835.1
Location: NW:385203-394649[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.088 5.5 6.8 0.4 2 23 126 147 125 148 0.94

2 17 3.4 2.1e+02 1.8 3.7 1 23 154 176 154 176 0.97

3 17 0.01 0.62 9.7 0.4 2 23 182 203 181 203 0.97

4 17 0.0059 0.37 10.5 2.0 2 21 480 499 479 500 0.95

5 17 1.4 89 2.9 1.0 1 23 567 589 567 589 0.82

6 17 0.89 55 3.6 1.3 2 23 770 791 769 791 0.95

7 17 2.3 1.4e+02 2.3 0.3 3 23 808 828 806 828 0.93

8 17 0.014 0.85 9.3 0.3 1 23 836 858 836 858 0.98

9 17 0.017 1 9.0 1.0 2 23 955 976 954 976 0.96

10 17 0.17 11 5.8 0.7 1 23 986 1008 986 1008 0.97

11 17 0.0026 0.16 11.6 0.1 1 23 1085 1107 1085 1107 0.97

12 17 0.022 1.4 8.6 0.3 1 23 1183 1205 1183 1205 0.97

13 17 1.7e-05 0.0011 18.4 1.0 1 23 1211 1233 1211 1233 0.97

14 17 0.0033 0.21 11.2 2.6 1 23 1284 1306 1284 1306 0.97

15 17 0.00054 0.034 13.7 1.7 1 23 1312 1334 1312 1334 0.99

16 17 0.015 0.95 9.2 0.5 2 23 1440 1461 1439 1461 0.97

17 17 1.5 96 2.9 0.2 2 23 1469 1490 1469 1490 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.088	5.5	6.8	0.4	2	23	126	147	125	148	0.94
2	17	3.4	2.1e+02	1.8	3.7	1	23	154	176	154	176	0.97
3	17	0.01	0.62	9.7	0.4	2	23	182	203	181	203	0.97
4	17	0.0059	0.37	10.5	2.0	2	21	480	499	479	500	0.95
5	17	1.4	89	2.9	1.0	1	23	567	589	567	589	0.82
6	17	0.89	55	3.6	1.3	2	23	770	791	769	791	0.95
7	17	2.3	1.4e+02	2.3	0.3	3	23	808	828	806	828	0.93
8	17	0.014	0.85	9.3	0.3	1	23	836	858	836	858	0.98
9	17	0.017	1	9.0	1.0	2	23	955	976	954	976	0.96
10	17	0.17	11	5.8	0.7	1	23	986	1008	986	1008	0.97
11	17	0.0026	0.16	11.6	0.1	1	23	1085	1107	1085	1107	0.97
12	17	0.022	1.4	8.6	0.3	1	23	1183	1205	1183	1205	0.97
13	17	1.7e-05	0.0011	18.4	1.0	1	23	1211	1233	1211	1233	0.97
14	17	0.0033	0.21	11.2	2.6	1	23	1284	1306	1284	1306	0.97
15	17	0.00054	0.034	13.7	1.7	1	23	1312	1334	1312	1334	0.99
16	17	0.015	0.95	9.2	0.5	2	23	1440	1461	1439	1461	0.97
17	17	1.5	96	2.9	0.2	2	23	1469	1490	1469	1490	0.91

Sequence Information

Coding Sequence: ATGTCAGGAAGACCGCCTCGTTTGCGGGCACTTCGACCTCGAccacagcagcagcagcaagttAAAACGGATATAACGCAAAAGATGATTACCGATTTGGAAGATAATGAAGCAGAAAGTGAAACGAAAAATGATCCTGTTAATAATCAACtcaaggaaaataagaaaatcggAGAATCTTATAGTAACGATGATCACCAGATGGAAAATCAAAATGTTAATggcaaatctttttctactctGGAATTGTTTAACATGAAAGACATCAATGAAGAAGAATCCTTGAAGGATCAATCGGACTTTAATGTTTATTTGGAGCAAGTGAAAAAAGAACATCAACAAATGAACAAAAGCGTTCATGATACAAGTGAAAATCAATGTCCTATGTGCCCTTATGATGCACTATCTTCACGTGATCTGGAAACTCATCAACGAGTACatcattttaaacgaaaattcttTCGTTGTGCTAAGTGCTCTTATGTTACGCATGTGCGAGCACGTTATACAAAGCATGTCAAATATCACTCCATGCCAATGATCAAGTGCGATGCCTGTGATTTTAGTACACCATATAAgTGGAACTTGGATCGACATACACGTAATCACGGTGGCGGAGGGACTTTTCAATGTAGAGCATGTAATTTTACTGCTGATATTCGACAAAGTTTAACGGTGCACGAGACCAACCATCACGAGCCTCCAGTAGGTCAATCCAGTCGCAGAAGCAATATGCCATTTGAGCGTAAACCACGCAATAGTCCAAAACGTTATAATCAGGTTGGTGCAAGTGATTTTCGGGAACCTACCGGTGCGACTGGAAATACTACTGCTATTAATCTTGGGGAATCTTTCAATACCGATCAATCAATTGACGATAAGAAAAGTGTACTTGCAGGTGCGGATTGCATTCCTTTAAAATGTGAAGAGAAAGCTTGTCAGTTTGTAACATCTTGGGATTCTGAAATGCAACGTCACTTGGCAGAATGTCACGCACCAATCGCCTTGAACAAATCGAGAAAACCACTGCCAATGTTAATTCCATTAAATCCAGTGAACAATAAATCTAATACTATATTAAATAGTAATACACCAGCTACATTGTTAAAAGTTCCACGCGTTAGAGTGAGACCTGAACTTGCTCAAATTGCAAGAGATACCGAAATGGCTAAATTGTATGGGAATAAAGAGaTGAACTCTAAGAAGAATGTTAATAGCGTAGTAAAtgcatttgaaagaaaaaatgcctCCTTTTTTGAtaaacttaaagaaaaattatcatcgTCAGTGGCCATGAACAAAGGGATGCCAGAGGTAGCTGTAAGTAACATGATTGATCTGAAATGTTGGTGTACATTTAAAGCTAGTAGCATGGAAGAACTGGCTTCTCACAAACAAACACACCACACTGCTCTCAGTGTATCTGTGGGCATGTCACGTTGTCCTAAGTGCAGGAGACGTTGCAAGAGTACAACTGATCTTGAAGTACACATGCAGTATTGTCAGCAAACAAGCAGAGAATCACCGGTTGATAGTAGTTTTGAGAAGGTTACTGAGTGCTCGGAACTTCGCATGACTGCATACAGTAGTGAATATACGTTTCCTTCTCATTTGGAATGGGACACCAGCCTTGGAGGGCACAATTCTTCTGGATCTTCGGTCGAGGGAACTTCTGCGCATCCAAATGGACGACGAGTATTCAAGTGTCCTCATTGCCCATTTTGGGCATCAACTGCAAGTCGTTTTCATGTGCACATAGTTGGTCATTTAAATAGGAAACCGTTCGAGTGTTCTCTCTGCGCATATCGTTCTAATTGGAGATGGGATATTACAAAGCATATTAAGCTTAAAGCAGCTAAAGATCCGGTGCATTTGACTGCTAGAGTACTTATGACTGATGAAACAGGTCGacgaaattattcgaaatataacaaataccTTGCACAGGTTGAGCAACAAGTATGGGATGATCAAAATATGGAGGAAAGAAGTATAGAAGAAGTAAACTTTAGTGAACCTCCAACTAAAGTGTTAATTCTGAGTAATAAAGATTACTCACAGACTGCTGAACTTCCTTCTTCCGTTGATTCTaagttaataacaaataatgacAATCGCAATGAAAACATCATATCTTTAAGACATCCACCTCCGTTGAAAGTTTCCGTTAAAAATCGTGGACAATCTttgcttaaaaataataccacTAATGTACAAAATTCAAGTATATCTATCTCGACCTCTACAACGGTATCACCAACAAACACTACAACAATAACTATGGATGATAACAAGCGTACTATGTGGAAATGTaagaaatgtaattataaagaTTCTAATAAGGATACAGTTCTGTTGCACGTAAAGTCTCATTATGAAGCCATTGATCAAAATGTCAATGAAGAAAGGAACATCTACGGCTGTGGAGATTGTCCATTTTCTGCATCAGATACAGTATCTTTATCAATGCATAGAGTGCATCATCGTCcaaataataatgcaatatttaaatgttatcttTGTCCATATTACGTTAATACAAAAGCCGAGTTATTGGAACATGCAAGACTTCATGGAGAGGAATTAGCAGTTGTACATCAACAGAATATGGATTTTCGCATGCCTGTTTTAAAGTCCAAGTTACAGACTATAAATTCTGAAGACGgtgataataatataaagaaagaaactaccatagaacaaaatattccTACTACGTCAAAAAGCAATGGAGCATCCTTATCGAGCGTACCAACGACAagttcgaatagaaaaaatcctGTTCTTTTGGACACGCGTCACCTACCTGACGCGCCATTGGTGTGGGTAACGAGACCGGACGGTAccttaattaaaatgttaaaatgtcGATACTGTCCATATGTGACTTCTCGTCGTGCGGAAGTTTGCGATCACGAGATGATGCACGTTGATTATCCAAGTCAAGATCCCTTCTTTACTTGTGATAATTGCAGTTACACCAGTGCCCATAGAGAAGTGATGAACGCCCACGTGGATATGCATTCGGGTTCTTCAGGTATTGTTCACTGCCTTGTCGATCAAGCACGATCGGATTCACAACAGCTTAATGATTTGTTGGCATTACTTAATCTTACACATATGCCAGCCTTGGGAGCAGAACCGGATCTGCGTGATTTGAGATTAGTATATTGTTGCGGTAAATGTCCAGCACGGTTTCTctgtgaaaaagaattgagaatACATCTGCGTTATCATATGACCGAGTTAGCTTACATGTGCCAGTGGTGTTCGTATGCAGCACGCCAGCCAGCTCATCTTGTTGCCCATCAGAAAGCACACTCTACAGAATATCAAGAACGTACTAAATATTTGTTGACTTTGCATGGCTATTCTCAAAGATTTCCACCTCCTCCAACTGCATGTGTTGAAGCCAGCGATCAAGAATTCAATGACACTTCTAATAACGTCGCCTGGATCGTAATTAAAGTATCTGAAGATTCATCCTATTCAACGaactcttcctctttttcggGGACGTCTGCTCAACGATCCAACAATCAAGTGTTCACCTGTGCTAAGTGTCCAGCACGATATTTCAAATTAGATGCTTTAGAATATCACATGACTTTACATGGATCTAACAATCGTTTCAAATGTTCCGAATGCGATTACTCATCGAAAACatcacaaaatttaataaaacatcaaGTGGTACATCGAAGGCATAACGAAACCAACGGCATGGCCTCGTCTAACTCTTCCACCTCGACATCTCTACCTGATCCCCAATTCGGTGTATTTATGCGTGGTAATCCTAATTTCGTTTATCCAGGTTATTTACGTAACGGTAGATTGAAGGAAAAACGTTACAAATGTCATAAGTGTCCGTCGGCGTTTGAAAAACGCGAACAGTATAGAGTTCATTTGACGTTGCATGGCGCCAAACAACGATATCGGTGTGATACATGTGATTACTCCGTCAAATATTACGCAAATTATATTCAACATCTAAAGAAACATCAGGCTAATGCGGAAGCACAAGCATCTAGACGACGATTAGAGGATGACACTATATCGGTTGATAGCGATGGTATCACCGATCTTTCCATGTCGAATTTTCGTTCTGGTAAAACAATTGGATCTGGTACAGCAGCAGCATCTGTTACGACAATTTCTATGTCAACCATAAATACAATAGCCGGTAGTGGCGGTATAACTTCTATTTCGACTCCATTGAATTCTATGCACGTTTCCAATCAAGATAAACAGGCATTGATATTAATGCAGAAAAAAGGAATGTTACCGTCGTCGAACGAAATTGATATCGAAATAATTCGTTGCCAGAATTGTCCGTTTTCAACAACTGATAAGGAAGCCATGGATGCTCATAAAAGACGTCACGGAATTGAACGGATGACACCATCCTGTCCACATTGCGATTATATTCCTCGAAGGGATGAAAACGTGGGCGAACATATCAGATTGCATTTTACCCGACTATACAAGCCTGAGTCTTATCTTATCATAGAGTTGCTTACTTTAACGATGAGAAAGGTTGCTGTTAACGGGAAAGAagatcagaaaaaaaataatatggaattactttttaaagagTGCTCCGATGGAAGATTCTTCCCTCTAACAGACGGAAATTCCAGCTCGTTTAACGTTAATGCGTcgcatattaataattgtaaagagAAAGTTATAGTAGATCCAAATACGGGAGAGACCAAGCAAcgcttttttgtttaa
Protein Sequence: MSGRPPRLRALRPRPQQQQQVKTDITQKMITDLEDNEAESETKNDPVNNQLKENKKIGESYSNDDHQMENQNVNGKSFSTLELFNMKDINEEESLKDQSDFNVYLEQVKKEHQQMNKSVHDTSENQCPMCPYDALSSRDLETHQRVHHFKRKFFRCAKCSYVTHVRARYTKHVKYHSMPMIKCDACDFSTPYKWNLDRHTRNHGGGGTFQCRACNFTADIRQSLTVHETNHHEPPVGQSSRRSNMPFERKPRNSPKRYNQVGASDFREPTGATGNTTAINLGESFNTDQSIDDKKSVLAGADCIPLKCEEKACQFVTSWDSEMQRHLAECHAPIALNKSRKPLPMLIPLNPVNNKSNTILNSNTPATLLKVPRVRVRPELAQIARDTEMAKLYGNKEMNSKKNVNSVVNAFERKNASFFDKLKEKLSSSVAMNKGMPEVAVSNMIDLKCWCTFKASSMEELASHKQTHHTALSVSVGMSRCPKCRRRCKSTTDLEVHMQYCQQTSRESPVDSSFEKVTECSELRMTAYSSEYTFPSHLEWDTSLGGHNSSGSSVEGTSAHPNGRRVFKCPHCPFWASTASRFHVHIVGHLNRKPFECSLCAYRSNWRWDITKHIKLKAAKDPVHLTARVLMTDETGRRNYSKYNKYLAQVEQQVWDDQNMEERSIEEVNFSEPPTKVLILSNKDYSQTAELPSSVDSKLITNNDNRNENIISLRHPPPLKVSVKNRGQSLLKNNTTNVQNSSISISTSTTVSPTNTTTITMDDNKRTMWKCKKCNYKDSNKDTVLLHVKSHYEAIDQNVNEERNIYGCGDCPFSASDTVSLSMHRVHHRPNNNAIFKCYLCPYYVNTKAELLEHARLHGEELAVVHQQNMDFRMPVLKSKLQTINSEDGDNNIKKETTIEQNIPTTSKSNGASLSSVPTTSSNRKNPVLLDTRHLPDAPLVWVTRPDGTLIKMLKCRYCPYVTSRRAEVCDHEMMHVDYPSQDPFFTCDNCSYTSAHREVMNAHVDMHSGSSGIVHCLVDQARSDSQQLNDLLALLNLTHMPALGAEPDLRDLRLVYCCGKCPARFLCEKELRIHLRYHMTELAYMCQWCSYAARQPAHLVAHQKAHSTEYQERTKYLLTLHGYSQRFPPPPTACVEASDQEFNDTSNNVAWIVIKVSEDSSYSTNSSSFSGTSAQRSNNQVFTCAKCPARYFKLDALEYHMTLHGSNNRFKCSECDYSSKTSQNLIKHQVVHRRHNETNGMASSNSSTSTSLPDPQFGVFMRGNPNFVYPGYLRNGRLKEKRYKCHKCPSAFEKREQYRVHLTLHGAKQRYRCDTCDYSVKYYANYIQHLKKHQANAEAQASRRRLEDDTISVDSDGITDLSMSNFRSGKTIGSGTAAASVTTISMSTINTIAGSGGITSISTPLNSMHVSNQDKQALILMQKKGMLPSSNEIDIEIIRCQNCPFSTTDKEAMDAHKRRHGIERMTPSCPHCDYIPRRDENVGEHIRLHFTRLYKPESYLIIELLTLTMRKVAVNGKEDQKKNNMELLFKECSDGRFFPLTDGNSSSFNVNASHINNCKEKVIVDPNTGETKQRFFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01513756;
90% Identity: iTF_01233275;
80% Identity: -