Pcan004168.1
Basic Information
- Insect
- Polistes canadensis
- Gene Symbol
- Hr39
- Assembly
- GCA_001313835.1
- Location
- NW:726950-746700[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3 9.2e+03 -5.9 5.5 139 162 55 76 24 117 0.54 2 5 0.73 2.2e+03 -3.3 7.1 43 163 241 383 220 401 0.66 3 5 3 9.2e+03 -7.6 9.3 76 145 424 492 389 527 0.39 4 5 6.6e-08 0.0002 19.9 0.1 1 21 596 616 596 628 0.93 5 5 4.2e-70 1.3e-66 224.8 0.0 163 408 743 993 616 993 0.76
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCGGCGATGGCCCGGGACCTGGCCCAGGCTGGTGGCCGTCAACGCAATCCTGGAAATCGTCCGGTTCCGTTGGATCTaactcgtcgtcgtcttctaCCTCCGGTACAAGCGGCGGCACCACTTCCGTTTCTGCCACCGCCGCCACCACCGCACCCTCCACCGGATCGGTGGGCTCATCGGTTTCACCAACGTCCTCGTCCACCTGTTGTTCTTCATCGTCCATCGGTAATTCTTCCACGATGACCACTACTCGTTCCACGGAAACGGGGAAGAACGTTTCCGTAACTGCGATCAATGTCCCACCTACGCATCACGAGATGCACGATgGGAAAGGCATCTGTAAATATCTAGGAGGTCAAAATGGCGTGACGGTGTCCGTAGTTTCAAATTGCGGCTCGGTACTCGGGTGCACGAGTAGCACCAGCAGCAACGTGGGCTCGCATGGCATCGGGATCGGTATTCTCAGTTCAAATGCCACGAATATCGACGACGCGGACGACAGCGACGGTGAAATAAGCAAGATCGACTTCCGCGGTGTCAATCTAAGAACCAAGAAGAAACGAGATATCTCCGTAAATCAGAGCGGTGAGAAAATCGGCGATTGCGATGGCGAAGGTGAAAGCGGAGCTTGCGACGGCAACGATACGtctcaacaacaacaaccagaGAGACCTATGTCATGGGAAGGAGAGCTATCCGATCAAGAAATGTCTTCGAATACCCTTACTAATCAGGACGATCACGAAGAAACGTCGATGGAAGGTGTTCAAGTTTGCGGTTCCAGTCCTGGACCTATGGAACAGAAGTTTCCAATAAAACCAGAACCAGATTTTCGATCGAGTTCAGGATACGGGCTTTCGGGAAACTTATCTTTAAGTCACAATCAACAATTACAGCAACAACGTGGTATCGAAAATCTTGAACAAACTCAACAGAGTGATTTACCTCTTCTCGTGGGAAAATTATTGGGCGGTTATAACAGTTCTACTCCAAATCACAGTCCGGTTCTTAATCCAAGACATCATTTGACCAAACACAGTCACACGCGATCGCAgGTACCATCGCCAGATTCAGCTATTCATTCTGCATACAGTGTCTTCAGTTCTCCGACACAAAGTCCTCACGCTGCAAGACACTCCGCCTTGGGAGCAGGAAGTCCTATTCCTTCTTCCTCGCTTTCCTTATCTCGACATAGTTTCAATAATTCGACGTCCTCGTTgtcactctccctctctcattcGCTTTCACGTAACAATTCAGACGCTTCGAGCAGTTGTTACAGTTATGGCTCTTTGAGTCCACCCACGCATTCTCCCGTCCAGCAACCTCGACATCCGCACGCTCACTCGCAACATCAGCATCAACAAGTAGCACAAGGTAGTCCTTTGCATCTTCCAACGGCTGCTTCTTCGGCCGTGAACGCGCACCATTATTCCTCTTCCGCGCCAGGATCGGAACTTTCTTCGGATGGGCATCCTGGAACAGAAGATCAAGAAGACTGTAGAATACCTGCTGCACCATCTGGTATTTCCACGAGACAGCAGTTAATTAATAGCCCCTGTCCGATCTGCGGTGATAAGATCAGTGGATTTCATTACGGTATATTCTCGTGCGAATCGTGCAAGGGTTTTTTCAAGAGGACCGTCCAGAATCGCAAAAATTATGTGTGCCTTAGGGGTGCAGCTTGTCCTGTTACCGTTGCCACAAGAAAGAAATGCCCTGCTTGTCGATTCGACAAGTGTCTCAATATGGGAATGAAGCTCGAAGCGATCAGAGAGGATCGTACCAGAGGTGGTAGGAGCACTTATCAGTGTACATATACATTACCGACTAATTTCATCGGTAGTTCTGCAAACAATATGACGACTGGCGATAAGATAAACGCTGCTGGTAATTGCAGTCCTGCACCGCCTGGCAGTGAACATCATTATTCTGTCAGACATCATTCGAATCATTCGTACAAAGTACAAGTAGTTCCACAACTTTTGCAAGACATCATGGACGTGGAACATCTTTGGCATTACAACGACAGTGATCGTATAACTGGTATTCAATCTGGTGTGATAACTTCGGGCGGAGGTAGAAATGCTCCCGGCAGTGACATGTTATTAGGAAGCGGAAACGGTGCTGGAGCTAATGTTTCTTCAGGTAGAAGTGGATCTGCTACCAATGGCTCTAGTACTGACTGTCCCACCAACGGACACGgtactaataatattaataacagaAGAGACGACAATATCGCAAGACCTTGTTCAACAGACTCGACTTCGACAGGTAGTCACGAACAATTATCGGCTAACTCTGGCAACGTTGGCAATTGTAATTCTCGAATGTGCGGAAATTCTAATGGCAATCCATCGACACATCCGGACTTTATTTCGAATCTTTGCAATATTGCCGATCATCGTCTCTATAAAATAGTTAAATGGTGTAAGAGTTTGCcgcttttcaaaaatatttctatcgacGATCAAATTTGTCTACTGATCAATTCTTGGTGCGAGTTGTTGCTTTTCTCTTGTTGTTTCCGCAGTATGAGTACTCCTGGTGAAATAAGAGTATCTCTCGGCAAGTCGATCACATTAGAACAAGCCAGACAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTAGCTTTCACCAATAATTTGAGAAGGCTGAGGGTGGATCAATACGAATACGTTGCGATGAAGGTAATAGTATTACTGACATCTGACACCAGTGAATTGAAAGAACCCGACAAAGTTAGGGCCTCTCAAGAAAAGGCTTTGCAGGCACTTCAACAATATACTATTGCCAGATATCCAGAAATGCCTGCTAAATTTGGGGAACTATTATTGAGGATTCCAGATTTACAAAGAACGTGTCAAGTAGGCAAGGAATTGTTGAGTGCAAAACGTGCTGAAGGAGAAGGCAGCTCGTTTAATCTGTTAATGGAATTATTGCGAGGCGATCATTAA
- Protein Sequence
- MSEQNGPGDGPGPGPGWWPSTQSWKSSGSVGSNSSSSSTSGTSGGTTSVSATAATTAPSTGSVGSSVSPTSSSTCCSSSSIGNSSTMTTTRSTETGKNVSVTAINVPPTHHEMHDGKGICKYLGGQNGVTVSVVSNCGSVLGCTSSTSSNVGSHGIGIGILSSNATNIDDADDSDGEISKIDFRGVNLRTKKKRDISVNQSGEKIGDCDGEGESGACDGNDTSQQQQPERPMSWEGELSDQEMSSNTLTNQDDHEETSMEGVQVCGSSPGPMEQKFPIKPEPDFRSSSGYGLSGNLSLSHNQQLQQQRGIENLEQTQQSDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHAHSQHQHQQVAQGSPLHLPTAASSAVNAHHYSSSAPGSELSSDGHPGTEDQEDCRIPAAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAACPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPTNFIGSSANNMTTGDKINAAGNCSPAPPGSEHHYSVRHHSNHSYKVQVVPQLLQDIMDVEHLWHYNDSDRITGIQSGVITSGGGRNAPGSDMLLGSGNGAGANVSSGRSGSATNGSSTDCPTNGHGTNNINNRRDDNIARPCSTDSTSTGSHEQLSANSGNVGNCNSRMCGNSNGNPSTHPDFISNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPDKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQVGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01513512;
- 90% Identity
- iTF_01234404;
- 80% Identity
- iTF_01232447;