Pcan002053.1
Basic Information
- Insect
- Polistes canadensis
- Gene Symbol
- retn
- Assembly
- GCA_001313835.1
- Location
- NW:77913-206449[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-24 2.4e-21 75.0 0.0 2 89 282 367 281 367 0.96
Sequence Information
- Coding Sequence
- ATGGAGATGAGCGACGATTATCAGGACATGGTTAATCCAGGTGGAGGGATGGCAAATCTACAACCCATGGGGGAACACCATCAGCAAACGCCTGAAAGCTCACCGTCAAATCAAGAGGAGGAGTTATCGGATCCGGATTTGCAGGATCAAGAAAGTGGGGAAGAGTTACCCCCACGACCAAGGGTTGCAGTTCACCCTTCGGTTTTACCATCAAATACATCCGGAACTCCTTTATCAAATTTAAGCAACCTTATGAACTCCCACAATCCGCAGTTTCTCGCCAAACTGAGGATGGAAGCGGAGGCTGATATATTAACAACAAAGAACAGCTTGGAGGTGTTGCAGGCTGCTATGAACAACGGTGTATTGAATTTGCAAGGGTTCCCATTACCCATGTTGCCATTACCTAATATGGGAATTGGTGGAATGATTCCACAAACGCCATCTGTAACCACAACCTTGCCTATGAGTGTTGGTGCAGAGGGTTGTTCTGGTACAGCAACAACTACACAAGTGTTAAATGTACCAATGGGTATTGGTCACCTGGATACAACTTCCAGCCCTTCCCGGTCAAGTGAATCTCCAAGATGTAGGTCAAGAAATGGGCCAGATTCTGCAACTAATTATTCACTAAACGTCAGCAGCAGTAGCAACGGTGTCAACAATAAtagtcatcatcatcattcccACAACAGTAGTACTAGtaacaacagcaacaataataataacaacaataacaacagtcagaataataataaccatcCTCAGAATGGTCAGCAACCGAATAATTGGAACTTTGAAGATCAATTTAAACAGttATACGAGCTCAGCGACGACCCTGGAAGACGAGAATTTTTGGACGATTTATTCAGCTTCATGCAAGGTCGTGGGAGCCCGATAAATCGATTACCTATAATGGCAAAATCAGTATTGGATCTTTATGAACTTTTTAATCTCGTGATAGCACGCGGCGGATTAGTTGATGTTATAAACAAAAAGCTTTGGCAGGAAATCATCAAGGGTCTTCAACTACCATCTAGCATCACTTCCGCCGCGTTTACTTTACGCACGCAaTACATGAAATATCTTTACGAGTACGAATGCGctagaaaaaatttatcaacCCCTGCCGAATTGAAATTAGCAATCGATGGTAATCGTCGGGAAGGACGTAGGAATACTTATGTACAATTTCCAACCGGATCCGGTAACGATGGTCAAAGAAATCAATCAACACCATTGTCAATGCGTTCAAGAATGTCACCTAATGCGATGCAATTACATCCACAAATTTCACCACTTTCATTGGTAACAGCGGCCGCAGTTACGTCAGCACAATCCATGGTCAATGGTAATTCGGTGCATCCGTCTTTGGTGCAACATTCCCAGATATCCCAACTTCCTCAAGGATCATTGAACCATACACAAAATATATCCCTTACGAGCGTAAATGCGTCCGAATTCGAAGCACGAATGGCCGAATATTTTAGGATGTATCATAGGGAAAAATTTGTTGCAACGGGGTCGTCACCACCGATAATATCTCAGCCAGCACTTGCGCATCATGCCTCTTTATCACCACAAGCATCACAATCCTCGTTGCAACCTGTGCCAAGCCCAGAACCACAAAGAGAAGCATTGGATCTTGGAGTTAGGTCATCATCTGTATGTTCCTCACCTTCTGTAGCCTGCGGACGAAGCCCTTTATCTTCAACCAGCATTTCACGAAAAAGGGATTCGGATTCAGTTACTTCTGGTAAAAAAAGGCGATTATCTGAAGTAGATGAATCTATGGAAACGGTTCAACCCTCAACTTCGTCTACCtcaaaaaacattaaaatttcCACAGaaaCTAACAACGATGATGGTTCATTGAACGTCAGTCTTACAATAGAAGATGCAACTTATCGAGGAGTCCTATTCTTTGATTCAGGATCAAGATCAAAATCTGATTCGTCTAGTTCTAACAGTCCACCAACGACTAATGACAAATAA
- Protein Sequence
- MEMSDDYQDMVNPGGGMANLQPMGEHHQQTPESSPSNQEEELSDPDLQDQESGEELPPRPRVAVHPSVLPSNTSGTPLSNLSNLMNSHNPQFLAKLRMEAEADILTTKNSLEVLQAAMNNGVLNLQGFPLPMLPLPNMGIGGMIPQTPSVTTTLPMSVGAEGCSGTATTTQVLNVPMGIGHLDTTSSPSRSSESPRCRSRNGPDSATNYSLNVSSSSNGVNNNSHHHHSHNSSTSNNSNNNNNNNNNSQNNNNHPQNGQQPNNWNFEDQFKQLYELSDDPGRREFLDDLFSFMQGRGSPINRLPIMAKSVLDLYELFNLVIARGGLVDVINKKLWQEIIKGLQLPSSITSAAFTLRTQYMKYLYEYECARKNLSTPAELKLAIDGNRREGRRNTYVQFPTGSGNDGQRNQSTPLSMRSRMSPNAMQLHPQISPLSLVTAAAVTSAQSMVNGNSVHPSLVQHSQISQLPQGSLNHTQNISLTSVNASEFEARMAEYFRMYHREKFVATGSSPPIISQPALAHHASLSPQASQSSLQPVPSPEPQREALDLGVRSSSVCSSPSVACGRSPLSSTSISRKRDSDSVTSGKKRRLSEVDESMETVQPSTSSTSKNIKISTETNNDDGSLNVSLTIEDATYRGVLFFDSGSRSKSDSSSSNSPPTTNDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01234808;
- 90% Identity
- iTF_01234808;
- 80% Identity
- -