Pdom054611.1
Basic Information
- Insect
- Polietes domitor
- Gene Symbol
- -
- Assembly
- GCA_947397865.1
- Location
- OX377621.1:172053215-172055631[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.21 38 6.7 1.8 1 23 253 276 253 276 0.93 2 13 0.00019 0.036 16.3 4.9 1 23 286 308 286 309 0.95 3 13 5.8e-05 0.011 17.9 2.9 1 23 321 344 321 344 0.98 4 13 0.053 9.8 8.6 1.3 1 23 360 383 360 383 0.96 5 13 0.0052 0.96 11.8 6.0 1 23 399 422 399 422 0.97 6 13 0.0047 0.86 11.9 6.5 1 23 437 460 437 460 0.97 7 13 0.017 3.1 10.1 7.2 1 23 484 507 484 507 0.97 8 13 0.0019 0.34 13.2 1.2 2 23 526 548 525 548 0.96 9 13 1.2e-06 0.00022 23.2 3.6 1 23 567 590 567 590 0.98 10 13 0.34 63 6.0 1.0 1 23 610 633 610 633 0.94 11 13 4.1 7.6e+02 2.6 4.6 3 23 642 662 640 663 0.92 12 13 5.3e-05 0.0098 18.0 2.4 1 23 669 691 669 691 0.97 13 13 6.8e-07 0.00013 24.0 2.9 1 23 697 721 697 722 0.93
Sequence Information
- Coding Sequence
- ATGTCCTCGCCCACTCTTTGCCGTTTGTGCGTCAATGATTGCAGCGACTGTAAAAGCCTCTACCATGACAACGGTCATGGCAATGATTTGTATGCTCTGACACTGAAATATTTCCATCCCAAGATAGTGGACCTGGACAAGGCGAAACATCTCACTGGCATCTGTGCACAGTGTTGTCTGCACATTTATGACTTTCACACTTTCGAAAAGTCCGTTCTGCAGGCCCAACAGGAACTCGAGGAGGACTGCAAGAGTGTTGTGGTAAAATGGGAAGCTGTAGATAATACGGAGGAAATCCTAAGCGATCATACTCCGCCCAAGGTTAAAAGAGAGTTGATACATTTGTCAGAGGCGGAGGAGGAGGAAGAAGAAATAGAAGCTGGAGCGATAGATAGAAGTCAGTTCGGTGTGGAGGAGACCAAAACACAAGCGAACGCTTCTTCTGATCCCACTATATCGGCTGTAAATAGCCAGATTGTTTGCAAGCAGGGAATACAATTTGAATTGATTGATGTTTCGCAAGGCTCTTTACAAGGCCACTGTGGGAGCCGAACCACCGATGCTATACCCGAACAGTTGTCCGAAATATCTCTGCCAAAATTGGAACTTATCGATGTTCCACCAGATGGCGAATTTAATACGGATGATGAAATGCCACTGACGAATTATGTGGGGGATATTAAGAAGAAAGCTGCCAACTCCCAATGCCACCTTTCACACGCAGCTGACTTTTATTTTGACAAATCTACGAAAATGTTCAAGTGTATGTTATGCCCGAACACGTATCCCTTTAAGAGTTCCATAAAACACCATGTCGTCAGCCAACATCAGCAACCTGCCACATCCAGGCTCAAATTCAAGTGCGACCTTTGCGAAAACTCCTTTTCACATAAAAATCAATTGACGAAGCACATGGGCCTGCACCATACTCCCGCGCGAGGAGGTAGCAAGCCCCCGTCGTTCAAGTGTAGTTTTTGTGAGAAGATCTATGCCTTTCAAAATAGCCTGCAGCGGCATATGAAGAAGCAACACGCTGCACAGTACATGGTGACTGATTACGATGCCGCAACGAACAGCTTCAAATGTCGATTTTGCGGCGACTCTTTTCTGCAAAAGACCGAGTTAACGGCACACACTGAACGGCAGCATCCCGAACAAGTAGTGAATTTCCAAGCTGAGGGCAATCCTTCGCCCTTCAAATGTGATCTGTGTGGTTGCTGTTTCAACGTAAAGAATGGCCTGAAAATGCACCAGACGAGGAAACATCCCGAAGTGTTCCGGTCAGAGAGGCCCGAACCGAACGAAATGTTCCAGTGCCACTTATGTGATTGCACTTACAAACTCAAGCGCAGCTTAAAGCTGCACATGGAGAGTAAACATCCGGAAAGTCTCTCGTATGAAATCACCTCCTACGATCTGGACTCTGCCTACGATGAAACCACAAAGCTCTACAAATGTCACTTGTGCGGCAATTCTTTTCGCCACAAAAATACCCTTTCCTTCCACCTGCGCTCCAAACATGCCCAACAAACGGATGAGACTGTGTCCTCCCAAGATGCCTCAAGGCCAAGGCTGAAGTGCAACTGGTGCAACATCTCGTATTTATCCAAACGTGGCTTGAGGCGGCACATGAAGTCGCAACATCCCGACAAGATTAGGAAGAAACTGCAATTTGAATACGACGACACCACGCAGAGATTCAAGTGTACGCTGTGCGAACACTCCTACAAGGACAAGAGTAACTTGAGAGCCCACATCAGGACGCGACACACAGACGACCAGGATGTACAAAATCCCGACTACGCTTACGACGAGTCCAGGAAAATGTTCAACTGTAAACTGTGTGGCAACTCTTATATGTACAAGAACAAAGTGCTATTACATTTGATACGGCAGCATAACAAGTCTGGCACGATTTTTGGTTGCACTCAATGCAGCAAGGAGTTTGTTACCAAGTTGGGCCTGAAGTGCCACAACAAAATCCATCATGCCCCGTCGGGTGTGTATTCTTGCCAGGAATGCGGCAAGAATTTCAAGAAATTATTCCCTCTGCGACGCCACATGTACTACCATAAGGTTCAGCCCAAGCACAAGTGCTCGGTTTGCGGCAAAGCCTTTAAGAGTCCCTATCAATTGCGTATACATATGAAGAGGAGTGCTCATCATCATGAGAAGAAAGTTATACAAGGAATGCCCAAAAATGAATGTGTGGGCGAGCCACAGACCACAAAAATTAAGCTTGAACCCAAGGATCCACTGGGAGCTGGAGTTTGCCTTGAACAAGAGAGTATTCCAGGCATTTCTAATGAGCTGGAGACCGCAATAGTTAAAGTAGAACCTATAGAAGCACTGGGAGTTTGA
- Protein Sequence
- MSSPTLCRLCVNDCSDCKSLYHDNGHGNDLYALTLKYFHPKIVDLDKAKHLTGICAQCCLHIYDFHTFEKSVLQAQQELEEDCKSVVVKWEAVDNTEEILSDHTPPKVKRELIHLSEAEEEEEEIEAGAIDRSQFGVEETKTQANASSDPTISAVNSQIVCKQGIQFELIDVSQGSLQGHCGSRTTDAIPEQLSEISLPKLELIDVPPDGEFNTDDEMPLTNYVGDIKKKAANSQCHLSHAADFYFDKSTKMFKCMLCPNTYPFKSSIKHHVVSQHQQPATSRLKFKCDLCENSFSHKNQLTKHMGLHHTPARGGSKPPSFKCSFCEKIYAFQNSLQRHMKKQHAAQYMVTDYDAATNSFKCRFCGDSFLQKTELTAHTERQHPEQVVNFQAEGNPSPFKCDLCGCCFNVKNGLKMHQTRKHPEVFRSERPEPNEMFQCHLCDCTYKLKRSLKLHMESKHPESLSYEITSYDLDSAYDETTKLYKCHLCGNSFRHKNTLSFHLRSKHAQQTDETVSSQDASRPRLKCNWCNISYLSKRGLRRHMKSQHPDKIRKKLQFEYDDTTQRFKCTLCEHSYKDKSNLRAHIRTRHTDDQDVQNPDYAYDESRKMFNCKLCGNSYMYKNKVLLHLIRQHNKSGTIFGCTQCSKEFVTKLGLKCHNKIHHAPSGVYSCQECGKNFKKLFPLRRHMYYHKVQPKHKCSVCGKAFKSPYQLRIHMKRSAHHHEKKVIQGMPKNECVGEPQTTKIKLEPKDPLGAGVCLEQESIPGISNELETAIVKVEPIEALGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01231745;
- 90% Identity
- iTF_01231745;
- 80% Identity
- iTF_01231745;