Pdom046443.1
Basic Information
- Insect
- Polietes domitor
- Gene Symbol
- bab2
- Assembly
- GCA_947397865.1
- Location
- OX377621.1:40064950-40066821[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-08 6.8e-05 24.3 0.0 8 39 396 427 391 431 0.87 2 4 4.5e-14 1.8e-10 42.1 0.0 5 44 447 486 444 487 0.93 3 4 0.019 73 4.9 0.0 27 38 516 527 512 533 0.88 4 4 5.6e-17 2.2e-13 51.4 0.1 4 41 555 592 555 594 0.93
Sequence Information
- Coding Sequence
- ATGAACCATTTGAAATGGATGGGCCACTCGGCGACTATTGTAGATATACACAAAAATTTGAGAGATGATTTACAAAGTTGTGAAGTTTTGCTGGTTGCGAAAGGACATTCTGTGAGGGCGCATCGTTTCGTATTGTCATCATGCAGTGATTTGCTAAGATCTCTATTGAGTGACATTCCACTTGGACAGGAATGTTGTATAATGGTGCCAGACATCAAGGGTCAGTTGTTGGACACAATGCTGGCTTTTATATATTTGGGCGAATGTTCGCTGTCTTCAACAAATTTATCCGAGTTTCTCGAAGCAATAAATGTCCTGGGGATAAAAAGTGCTATTTCATTTGAGTGCAATACAGCTCAAAGTCAGAATCATAGCAATGCTCCAATGGTTTCCACATCTAATGCAGGAGTCGGTGCAATGGTAAGACACGTAAGTGCAAGTGCCGCCGGTCCAGGCCCTGGCACTGTTATACATCAAGAGGAATTTATAGAAACCCAAACAGTTTTGCACGCCGATACACAGACGACGACTACAGCCGGTACAACCAATGTGTCTACGAATTCTTCCGCCAATCGGGAGTTGGAATTTTTAGATGTCTACCATGAGGAGCCACAACACAAGATCACTTATTCCATAGAGCACGTTCCTGGTTCCACCGGTGGCAATGAATTCATACTCACCGAAAATTCGGGTACTTTTACATTGACACACAATCATAAATTGGAATCAACTTCTAGTGCTGAATCTACCAATATGGAGGTAACCGAAGAAGATGCTTGCGAATCTCATATCATTGAAGAATATAGCAATGAAGAAGAACCATTAATACATATCGGCGGCGCTGCAGAGACAACAGCGGTATCAGCAACTAATGTTGCCGCAACACAAACAGTAAATTCGTCCGCCACTACCACTTCAATAATACAAATGAAACCAAAAATCAAAACCATCAAACTAAAAGGTCATACTATGGCGGCTACAATCATTCCAAAAATGGAGCCGGTGAGCAACGAAATAGACAACGTACAACACGCGGATGACATATCCATAATGCACACAAACCCAGAGGACAGTTACACATTGCTTAAGGATAACAGTACTAGTGAATCTATAGTTTCCGGCAATACTACTAATGAGTCTGGGGATTTTTCAATGAATTCCTCGGGATTAACAGCTGCAGACTTAGCATATCAAGCAATGGTGAACGAAGGGATGTCATTGCCAAAGGCTGCGGTTAAGTTTAATGTCTCCAAAACTGAGTTGTGGAGACGCGTACGCAGCACTGGTGTAGAAACGCTCCACAAGGCTCCGAAACTAGATCCTGAAAAGCTAGATGTTATTGAGTTAGCCAGTCAAGCTGTTATAAGTGAAGGTCTTTCCCTACAAAAAGCTGCAGTTCGTTATGATATCTCAAAAACAGTTCTGTGGCGTAGAGTTCGTAAACATCCGCAATATATGAAAACAGCACGAGAGAATCCCATAATTTCCAAAGCGTACGAACGCCTCAAATCTGGTGAATCACTCAAAAGCATATCGCAAGATCTAGACATACCCATGTCCACATTGCATCGCCACAAGGTGCGGCTGTCCCAAACGGGTCAGCTGCCTGATTTCGTTAGCTGTAGGAAGCGTGACAGCGTGTCCAAGGATGATTTGAAAGTTAAACTTGCCAAAGCGGTGCATGCCTGTGTTCATGAGGGTATGTCACAAAACCATGCCGCCAACCTTTATGAAATTTCTAAAAGTACTTTATGGCGTCACTTGCAAAGACGTGTCGCCGAAGCGGAAGCTGCCGAGACATCAGAAGGCGCTATTGAAGAGTCAATGGAAGAAGGAGACGAAGAAATCAAAGAGGAAGTTATCTTGTCCTAA
- Protein Sequence
- MNHLKWMGHSATIVDIHKNLRDDLQSCEVLLVAKGHSVRAHRFVLSSCSDLLRSLLSDIPLGQECCIMVPDIKGQLLDTMLAFIYLGECSLSSTNLSEFLEAINVLGIKSAISFECNTAQSQNHSNAPMVSTSNAGVGAMVRHVSASAAGPGPGTVIHQEEFIETQTVLHADTQTTTTAGTTNVSTNSSANRELEFLDVYHEEPQHKITYSIEHVPGSTGGNEFILTENSGTFTLTHNHKLESTSSAESTNMEVTEEDACESHIIEEYSNEEEPLIHIGGAAETTAVSATNVAATQTVNSSATTTSIIQMKPKIKTIKLKGHTMAATIIPKMEPVSNEIDNVQHADDISIMHTNPEDSYTLLKDNSTSESIVSGNTTNESGDFSMNSSGLTAADLAYQAMVNEGMSLPKAAVKFNVSKTELWRRVRSTGVETLHKAPKLDPEKLDVIELASQAVISEGLSLQKAAVRYDISKTVLWRRVRKHPQYMKTARENPIISKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVSCRKRDSVSKDDLKVKLAKAVHACVHEGMSQNHAANLYEISKSTLWRHLQRRVAEAEAAETSEGAIEESMEEGDEEIKEEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00816465;
- 90% Identity
- iTF_01231721;
- 80% Identity
- iTF_01231721;