Pdom004318.2
Basic Information
- Insect
- Polietes domitor
- Gene Symbol
- -
- Assembly
- GCA_947397865.1
- Location
- OX377622.1:58936182-58945896[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.5e-11 2.6e-07 32.0 0.0 1 38 566 604 566 609 0.89 2 4 2e-13 8e-10 40.0 0.0 2 39 621 658 620 661 0.94 3 4 2.4e-17 9.5e-14 52.6 0.0 1 45 675 720 675 720 0.98 4 4 2.4e-19 9.4e-16 59.0 0.0 1 45 727 772 727 772 0.97
Sequence Information
- Coding Sequence
- ATGCAAATTGTTTTTACAAACGGCTTGGTCTTGAGTCAGGACAATATCCCAGGTCTCTTGCGCACCGCTGAACAGTTGAAAATCAAAGGTCTCTGCGAAACCGCCGAAAACGCCGACGATCTAAATGACgctgccacagccacaataaccgtctccgaaaatatacaacaagccgtagtcggtaatattgtcaatgccacagtagtaccgggtcaaccctcgccgcccataccccagcaacatcatcagcagcagcagcaacaacaacaacagcagcaacaacaacaacagcagcagcaccaacaacaacaacagcagcagcaacaacaacagcaacagttgaacagtacagctgtgctaacacacgccgtcagtcccaatagtgcccaacaattggcagccaccggacaattggtaacctccacacccatctcgtcccaacagcaacaccagcaactgggtcgcaagtcgaggatacgcaaacgttctaaatcaccggatatcattctatcgcatcacgaacaacaggcccagcaacagcaaaatcaacagcagcagcagcaTCCCCAAGCCATCCTAATACAGAATCAAAATCAAGCGGCAATTGTCAGTCTACAGCAGACATCGGCTGGAAATTATATACCGGTGTCGGGCGTACAAACGGTTACGACCAGTGTAGCGGGTGGCCAGGGACAACAGCAGGGCGGCACAACTATAGTGACGACCGGCGACGATTCCGATTCGGAGAAGCCGACATTGCAGAAAATTTGCAAAACTGAAGCATCGTCCGCTTCGCCAGCGTCCGCATCATCGGCATCGGCGTCAAATAATGCTGGTGGTGTAACTACGGTAGCAGCACCGGGAACAGCAATTGTAACACAAATTGTAGTAGCTAGAGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGAATGAATGGTGGCATTCTGGGAGTCCCTATGGGCTTCTTGGATTTTGCCCCCGAACCACCGGCACCATCAGCGACGCCAGTTACGGTTACAGAACACGTGGACCTGTCATGTAACCCCAGCACGGATACAAGAGATTTATCAAATCCCTCAGAACAGCTCGATATCGACAATCACTTGGCCCAACACATGATACAACGGCTCGATCAATCTCCCATGCACTCCATGCACCATCAGACCGGTGACGAATCAAATTCGAATCTGGTCcagcacataaaaagcgaagtcctcgatgccaaacaacaacaacagcagcagcaggtgcagcaacaacagcagcaacaggccgctgctgcagccgccgcccaccatcaagctcaacagcaacagctgcatgcccagcagttggcggcgcagggacaaagccaccaacagcagcagtcacatcagcaacagcagtcgcaccagcaacaccatcagcaggcccaccagcaacagcagcaccatcaggatataacaggagccaccgtgatggagattgATCCGAGCCAGATAAAACATGAGCCGGGCATGATAATAACGCCGGAAATTGTAAATATGATGACCACCGGGCATATGGATATGTATAATTCCGATACGAGCGATGATTCAATGATGATTGCCAATGGCTCACCACATGATCAAAATGAACCGCACTATACCAATTTAGATCAGCAGCATGGTGGAGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGTCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCCACCACCCTGTGGCAACGAGCTCATCGCATGGGCATCGAGACACCGAAGAAGGAAGGAGGCACCAAATCGTGGAACGAAGACTCACTCAACAATGCCTTGGAGGCATTACGCTCTGGACAAATATCAGCCAATAAAGCATCGAAAGCCTTTGGCATACCTTCATCGACGCTCTATAAGATAGCACGACGTGAGGGTATACGATTGGCAGCGCCTTTCAATGCCGCCCCAACCACCTGGACACCCGAAGATTTGGAGCGTGCATTGGAAGCCATACGTGCGGGGCATACATCCGTTCAGAAGGCAAGTGCTGAATTTGGCATACCAACAGGCACGCTGTACGGTCGCTGTAAACGTGAAGGCATTGAGTTGTCTCGTTCGAATCCTACTCCATGGTCTGAAGATGCTATGAACGAAGCTTTGAATTCAGTGCGCATTGGCCAAATGTCTATCAACCAGGCTGCTATTCACTACAATCTACCCTATAGCTCTCTGTATGGTCGCTTCAAACGTGGCAAATATGATGTGTCCAATACCAGTGGTACTTCCATTAACAATACATCGGGCAATACATCGGGTAGCATTGAAATTATTGAGCATAGTCAAGAGAATTCGTTGCCTATGTTtcagcaacaattccaatatagtccatcaccgcatcagcacggtggcagtagtacaccgcaacaaagccaaacaccgcaacatctgcagcagcacgtagtgcatatacagcagcagcatcatcagcaacagcagcagccacagcatgcgcaacatatccaacagcaacaagatgttgtcacctcatccagtcaacaagttcaacaacagcacgccagcaattcagccgcagcggcagctgcatcacagcaacaacaacagcagcagcagcaacagattcagcagatctatcaccatcacagtacacccgagaggagttga
- Protein Sequence
- MQIVFTNGLVLSQDNIPGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATVVPGQPSPPIPQQHHQQQQQQQQQQQQQQQQQHQQQQQQQQQQQQQLNSTAVLTHAVSPNSAQQLAATGQLVTSTPISSQQQHQQLGRKSRIRKRSKSPDIILSHHEQQAQQQQNQQQQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAGGQGQQQGGTTIVTTGDDSDSEKPTLQKICKTEASSASPASASSASASNNAGGVTTVAAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEQLDIDNHLAQHMIQRLDQSPMHSMHHQTGDESNSNLVQHIKSEVLDAKQQQQQQQVQQQQQQQAAAAAAAHHQAQQQQLHAQQLAAQGQSHQQQQSHQQQQSHQQHHQQAHQQQQHHQDITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQHGGSSTPQQSQTPQHLQQHVVHIQQQHHQQQQQPQHAQHIQQQQDVVTSSSQQVQQQHASNSAAAAAASQQQQQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00679396;
- 80% Identity
- -