Basic Information

Insect: Polia nebulosa
Gene Symbol: -
Assembly: GCA_951329385.1
Location: OX589608.1:5830039-5887201[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.52 88 5.7 0.6 1 23 529 552 529 552 0.95

2 12 0.54 92 5.6 0.5 1 23 560 582 560 582 0.94

3 12 0.22 38 6.8 1.5 1 23 586 608 586 608 0.96

4 12 0.0001 0.018 17.3 1.0 1 20 615 634 615 636 0.94

5 12 0.01 1.7 11.1 1.0 2 21 643 662 643 663 0.92

6 12 0.00034 0.058 15.7 0.6 2 23 679 700 678 700 0.94

7 12 0.001 0.17 14.2 0.3 1 23 705 727 705 727 0.97

8 12 0.052 8.8 8.8 4.8 1 21 736 756 736 761 0.93

9 12 5.3e-05 0.009 18.2 2.3 1 23 769 792 769 792 0.93

10 12 0.011 1.9 11.0 0.4 1 23 798 821 798 821 0.94

11 12 0.037 6.3 9.3 0.3 3 19 834 850 832 851 0.89

12 12 0.076 13 8.3 0.9 1 23 864 887 864 887 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.52	88	5.7	0.6	1	23	529	552	529	552	0.95
2	12	0.54	92	5.6	0.5	1	23	560	582	560	582	0.94
3	12	0.22	38	6.8	1.5	1	23	586	608	586	608	0.96
4	12	0.0001	0.018	17.3	1.0	1	20	615	634	615	636	0.94
5	12	0.01	1.7	11.1	1.0	2	21	643	662	643	663	0.92
6	12	0.00034	0.058	15.7	0.6	2	23	679	700	678	700	0.94
7	12	0.001	0.17	14.2	0.3	1	23	705	727	705	727	0.97
8	12	0.052	8.8	8.8	4.8	1	21	736	756	736	761	0.93
9	12	5.3e-05	0.009	18.2	2.3	1	23	769	792	769	792	0.93
10	12	0.011	1.9	11.0	0.4	1	23	798	821	798	821	0.94
11	12	0.037	6.3	9.3	0.3	3	19	834	850	832	851	0.89
12	12	0.076	13	8.3	0.9	1	23	864	887	864	887	0.97

Sequence Information

Coding Sequence: ATGAAAGAAATTAACATAAATATAGAAGGTTATAACGTTAACGGGATATGTGTTGGCTGTTTGAACTATAATCGTCGTATGTTTTACCATCCCAGTGTAAAAGAATGTTTTCGTTTACTTGGAAATATCGATGTGCCAGATGGCTTAGAAGTCCAGGTGTGTTGGGAATGCCTGGCGCGCGTCAAATCTGCCATCAACTTCAAGGTGCAGATGCTGAAGTCCTATGACTTTCTCATCCAGTATTCTAGAGAGCACACATTCCTGGACTCTCCAAACGACTTCCACTCCCACGCGACCCTCAACATAGAACAGACCCATGTCGAGTATTACGAGTGTGTGCCGGAGACAGAGACTGTGGAAGATGAGAAGGAAGTCGAGGTCAAGGACGAGGAGGAGATCGAGGATAAGTATACTTTTGATGTGGCCGTTAAAGAAGAAACATTTGATGAGTCATACTTCCAGGACATACCAGTTGTTGACAACGATGTGACGTCGGACGAAGACGTGCAGCTTTCGAAACTGAAAGAGAAGGAGACAGAGAGAGTCAGGAAGAAGAGAAAGAGTGTCAAGAAGAAGGAAATGCAGAGAGATAGGATGCCGACCAACAAAAAACCAAGAAGAACGACCAGAGGTCTCTATGATATATCACAGTTTGAAGGCGCATTTCAAGAAATGGTCCGCCATGGCACATCTCTGAGAAAAGCTGCTATAATGTTCGGTTTGACACATGTAACTCTCCAAAGATACAAGAAGAGACGACTTGATAACAATTTTCCAGTCACTATGGGCTATGCAAGAAACAGTATTTTTAACACAGAACAAGAGAATCTCCTTACAGAGTATCTAAACAAATATGCGGAAGTATATCCCGGGTTATGTGTAAAGGTAGTCAGAAAATATGCTTTGGAGTACAGTCAAAAACTTGGATTGAAAACGCCAAAACCTTGGCTTGTTAATGGAACGGCTGGTGTTGATTGGTACAGGAATTTTATGTACAGAAATAAAGGTTTAGAAGATAGAGTTGTTAGAATAACTACTAAGGAAAAAGTTAGAGTTTTTTACGACCGATTATGGATGCTTTTAAGTCAGTATAATTTTTGTCCCTGCAATATTTATTGTCTAGACGAAATTGGTGttaatattgatgagtttgCAGATAAAGTTAGTCTTATAACAACGCAAAATGCAATATCTTTGCAAGTGTCTCAAATAAGGTTTGCGTATGCGGCGAATGCTGAAGGAGATACTATTCCTCCATTATTCTTTATACCACGAGAAAATGAAGAGACTGACGTAGAAATCAAAATAGAAAACCGTCAAGAACTACGAAATGAGACGATATTCATCAATTTCTTGAAACACGACATCGATTTGAAGAACTTACCCGATTGGACAGAAGACTCAAACTTTTTGGTTTACTCCCCAAAACGCCAGAAGACAAAGAAGGAGAAAAACCCCGATAAGAAGAGCAGGAAGTTAAAGAACCTTCCAGAAGAACTTGTAGAACTTTACACTATGAGTAAAGATGAAATGTGGTCTATCAGGATTGAGGACCTGAATAGCAAGGAGTTTCAGAAGCTTAAGTAtagGTGTGATGATTGCATTATTGCGTTCAACACTGAGAAATTGATGCATGATCATCTGAACGGGAAACACCAACCAAAAAGTGAAGACTGCCATCAATGCTCAATCTGCCAAGCCTACTTCCTCACGAAAGACAACGTCGCCGCTCACAAGGCACTGCATCTACAAGGCTACAGGTGTAAGGAGTGTGGTTTCAACACGACGCTCAAGAGGCGGATGTTGAAACACGTCGGGACTCACGCGCCGAGCGGGGATGCGCATGTGTGTAGCACTTGTGGGACTAGCTTTAGCACGAAATCGAAGCTAACCTACCACCGCGGCGTGTGTCGTCAAGAGAGGCCGCAGTGCGACTGCTGCGGGAAAGTCTTTGCCAACAAAATGACGCTCAAGTACCATCTCAAAATCCTGCCTCAGAATAAAGATGACAAGCCGAAAGAGAAGTTGTTCATACCGTGCAAGGGATGTGATAAAGTGTTCCACTCTAAGAAGAGTTATAGAGCACATGtCGTTATCCACAACGGCCTAACCTACCCGTGCCCAATCTGCGGCAAACTGTTCCAATGGAAGCGCAACCTCGCGCGACACTCGCGCAACCATCGCGAGCGAGAGCAAGGCAACCTGCACGAGTGTCGCGCCTGCAGCAAGACCTTCGCGAGCAGGGACTGCTACAACAACCACATGCGGCTCAGCAAGAAGCATGTCTCGCAGGACACCTACCAACACGAATGTAACTACTGTGGAAAGAAATTCGCTACGAAATGGTGTCTCACCGATCACATTGACTGGGATCACTTGAAGATAATCAAATATCAGTGCAGTTTCTGTTTCAAGGCGTTCAAAACAGCTAAGATATTAGTGGCTCACGTCAATAATATTCATGAAGGGAAGAAAAAAGAATTGGAGGGCGAGCATCTGTGTGAAATATGTGGCAAGTCTTACAGGACGGTAAAACGCTTAAAAGGTCACGTATGGGCGATGCACACGAAACGTTCAAGCAGTAAAATATACAAGTGCAAGTTGTGTCCGGCGACTTTCATGTGGCAGACTAGCATATACAAGCACATGAAGATGATGCACGACAataataagaagaataagGCGCATGGTGATGCAGTAACATATACAAATGTAAGCTGTATCAGGCACGTTAATGTGGCAGACAGCATATACAAGCACATGAAGATGATGCACGACAataataagaagaataagGCGCATGGTGATGCAGTAACATATACAAATGTAAGCTGTATCAGGCACGTTAATGTGGCAGACAGCATATACAAGCACATGAAGATGATGCACGACAataataagaagaataagGCGCATGGTGATGCAGTAACATATACAAATGTAAGCTGTATCAGGCACGTTAATGTGGCAGACAGCATATACAAGCACATGAAGATGATGCACGACAataataagaagaataagGCGCATGGTGATGCAGTAACATATACAAATGTAAGCTGTATCAGGCACGTTAATGTGGCAGACAGCATATACAAGCACATGAAGATGATGCACGACAataataagaagaataagGCGCATGGTGATGCAGTAACATATACAAATGTAAGCTGTATCAGGCACGTTAATGTGGCAGACAGCATATACAAGCACATGAAGATGATGCACGACAataataagaagaataagGCGCATGGTGATGCAGTAACATATACAAATGTAAGCTGTATCAGGCACGTTCATGTGGCAGACAGCATATACAAGCACATGAAGATGATGCACGACAACAATAAGAAGAATAGGCCGCCCCGCGCCGTGCAACCAGTGAAAAAAGAAGAGCCctacccgggaatcgaactagCGAACCGCATGCAGTACTTCCAACAGAACATTGGAGGCAACCTAAACATAGTTCACATACAACCTTTAGGAATTACTCAGAATATTGTGTAA
Protein Sequence: MKEININIEGYNVNGICVGCLNYNRRMFYHPSVKECFRLLGNIDVPDGLEVQVCWECLARVKSAINFKVQMLKSYDFLIQYSREHTFLDSPNDFHSHATLNIEQTHVEYYECVPETETVEDEKEVEVKDEEEIEDKYTFDVAVKEETFDESYFQDIPVVDNDVTSDEDVQLSKLKEKETERVRKKRKSVKKKEMQRDRMPTNKKPRRTTRGLYDISQFEGAFQEMVRHGTSLRKAAIMFGLTHVTLQRYKKRRLDNNFPVTMGYARNSIFNTEQENLLTEYLNKYAEVYPGLCVKVVRKYALEYSQKLGLKTPKPWLVNGTAGVDWYRNFMYRNKGLEDRVVRITTKEKVRVFYDRLWMLLSQYNFCPCNIYCLDEIGVNIDEFADKVSLITTQNAISLQVSQIRFAYAANAEGDTIPPLFFIPRENEETDVEIKIENRQELRNETIFINFLKHDIDLKNLPDWTEDSNFLVYSPKRQKTKKEKNPDKKSRKLKNLPEELVELYTMSKDEMWSIRIEDLNSKEFQKLKYRCDDCIIAFNTEKLMHDHLNGKHQPKSEDCHQCSICQAYFLTKDNVAAHKALHLQGYRCKECGFNTTLKRRMLKHVGTHAPSGDAHVCSTCGTSFSTKSKLTYHRGVCRQERPQCDCCGKVFANKMTLKYHLKILPQNKDDKPKEKLFIPCKGCDKVFHSKKSYRAHVVIHNGLTYPCPICGKLFQWKRNLARHSRNHREREQGNLHECRACSKTFASRDCYNNHMRLSKKHVSQDTYQHECNYCGKKFATKWCLTDHIDWDHLKIIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKELEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSSSKIYKCKLCPATFMWQTSIYKHMKMMHDNNKKNKAHGDAVTYTNVSCIRHVNVADSIYKHMKMMHDNNKKNKAHGDAVTYTNVSCIRHVNVADSIYKHMKMMHDNNKKNKAHGDAVTYTNVSCIRHVNVADSIYKHMKMMHDNNKKNKAHGDAVTYTNVSCIRHVNVADSIYKHMKMMHDNNKKNKAHGDAVTYTNVSCIRHVNVADSIYKHMKMMHDNNKKNKAHGDAVTYTNVSCIRHVHVADSIYKHMKMMHDNNKKNRPPRAVQPVKKEEPYPGIELANRMQYFQQNIGGNLNIVHIQPLGITQNIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01230508;
90% Identity: iTF_01230508;
80% Identity: iTF_01230508;