Pneb046500.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polia nebulosa
Gene Symbol
-
Assembly
GCA_951329385.1
Location
OX589608.1:5830039-5887201[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.2e-07 0.0001 23.8 0.0 10 41 224 254 224 256 0.94

Sequence Information

Coding Sequence
ATGAAAGAAATTAACATAAATATAGAAGGTTATAACGTTAACGGGATATGTGTTGGCTGTTTGAACTATAATCGTCGTATGTTTTACCATCCCAGTGTAAAAGAATGTTTTCGTTTACTTGGAAATATCGATGTGCCAGATGGCTTAGAAGTCCAGGTGTGTTGGGAATGCCTGGCGCGCGTCAAATCTGCCATCAACTTCAAGGTGCAGATGCTGAAGTCCTATGACTTTCTCATCCAGTATTCTAGAGAGCACACATTCCTGGACTCTCCAAACGACTTCCACTCCCACGCGACCCTCAACATAGAACAGACCCATGTCGAGTATTACGAGTGTGTGCCGGAGACAGAGACTGTGGAAGATGAGAAGGAAGTCGAGGTCAAGGACGAGGAGGAGATCGAGGATAAGTATACTTTTGATGTGGCCGTTAAAGAAGAAACATTTGATGAGTCATACTTCCAGGACATACCAGTTGTTGACAACGATGTGACGTCGGACGAAGACGTGCAGCTTTCGAAACTGAAAGAGAAGGAGACAGAGAGAGTCAGGAAGAAGAGAAAGAGTGTCAAGAAGAAGGAAATGCAGAGAGATAGGATGCCGACCAACAAAAAACCAAGAAGAACGACCAGAGGTCTCTATGATATATCACAGTTTGAAGGCGCATTTCAAGAAATGGTCCGCCATGGCACATCTCTGAGAAAAGCTGCTATAATGTTCGGTTTGACACATGTAACTCTCCAAAGATACAAGAAGAGACGACTTGATAACAATTTTCCAGTCACTATGGGCTATGCAAGAAACAGTATTTTTAACACAGAACAAGAGAATCTCCTTACAGAGTATCTAAACAAATATGCGGAAGTATATCCCGGGTTATGTGTAAAGGTAGTCAGAAAATATGCTTTGGAGTACAGTCAAAAACTTGGATTGAAAACGCCAAAACCTTGGCTTGTTAATGGAACGGCTGGTGTTGATTGGTACAGGAATTTTATGTACAGAAATAAAGGTTTAGAAGATAGAGTTGTTAGAATAACTACTAAGGAAAAAGTTAGAGTTTTTTACGACCGATTATGGATGCTTTTAAGTCAGTATAATTTTTGTCCCTGCAATATTTATTGTCTAGACGAAATTGGTGttaatattgatgagtttgCAGATAAAGTTAGTCTTATAACAACGCAAAATGCAATATCTTTGCAAGTGTCTCAAATAAGGTTTGCGTATGCGGCGAATGCTGAAGGAGATACTATTCCTCCATTATTCTTTATACCACGAGAAAATGAAGAGACTGACGTAGAAATCAAAATAGAAAACCGTCAAGAACTACGAAATGAGACGATATTCATCAATTTCTTGAAACACGACATCGATTTGAAGAACTTACCCGATTGGACAGAAGACTCAAACTTTTTGGTTTACTCCCCAAAACGCCAGAAGACAAAGAAGGAGAAAAACCCCGATAAGAAGAGCAGGAAGTTAAAGAACCTTCCAGAAGAACTTGTAGAACTTTACACTATGAGTAAAGATGAAATGTGGTCTATCAGGATTGAGGACCTGAATAGCAAGGAGTTTCAGAAGCTTAAGTAtagGTGTGATGATTGCATTATTGCGTTCAACACTGAGAAATTGATGCATGATCATCTGAACGGGAAACACCAACCAAAAAGTGAAGACTGCCATCAATGCTCAATCTGCCAAGCCTACTTCCTCACGAAAGACAACGTCGCCGCTCACAAGGCACTGCATCTACAAGGCTACAGGTGTAAGGAGTGTGGTTTCAACACGACGCTCAAGAGGCGGATGTTGAAACACGTCGGGACTCACGCGCCGAGCGGGGATGCGCATGTGTGTAGCACTTGTGGGACTAGCTTTAGCACGAAATCGAAGCTAACCTACCACCGCGGCGTGTGTCGTCAAGAGAGGCCGCAGTGCGACTGCTGCGGGAAAGTCTTTGCCAACAAAATGACGCTCAAGTACCATCTCAAAATCCTGCCTCAGAATAAAGATGACAAGCCGAAAGAGAAGTTGTTCATACCGTGCAAGGGATGTGATAAAGTGTTCCACTCTAAGAAGAGTTATAGAGCACATGtCGTTATCCACAACGGCCTAACCTACCCGTGCCCAATCTGCGGCAAACTGTTCCAATGGAAGCGCAACCTCGCGCGACACTCGCGCAACCATCGCGAGCGAGAGCAAGGCAACCTGCACGAGTGTCGCGCCTGCAGCAAGACCTTCGCGAGCAGGGACTGCTACAACAACCACATGCGGCTCAGCAAGAAGCATGTCTCGCAGGACACCTACCAACACGAATGTAACTACTGTGGAAAGAAATTCGCTACGAAATGGTGTCTCACCGATCACATTGACTGGGATCACTTGAAGATAATCAAATATCAGTGCAGTTTCTGTTTCAAGGCGTTCAAAACAGCTAAGATATTAGTGGCTCACGTCAATAATATTCATGAAGGGAAGAAAAAAGAATTGGAGGGCGAGCATCTGTGTGAAATATGTGGCAAGTCTTACAGGACGGTAAAACGCTTAAAAGGTCACGTATGGGCGATGCACACGAAACGTTCAAGCAGTAAAATATACAAGTGCAAGTTGTGTCCGGCGACTTTCATGTGGCAGACTAGCATATACAAGCACATGAAGATGATGCACGACAataataagaagaataagGCGCATGGTGATGCAGTAACATATACAAATGTAAGCTGTATCAGGCACGTTAATGTGGCAGACAGCATATACAAGCACATGAAGATGATGCACGACAataataagaagaataagGCGCATGGTGATGCAGTAACATATACAAATGTAAGCTGTATCAGGCACGTTAATGTGGCAGACAGCATATACAAGCACATGAAGATGATGCACGACAataataagaagaataagGCGCATGGTGATGCAGTAACATATACAAATGTAAGCTGTATCAGGCACGTTAATGTGGCAGACAGCATATACAAGCACATGAAGATGATGCACGACAataataagaagaataagGCGCATGGTGATGCAGTAACATATACAAATGTAAGCTGTATCAGGCACGTTAATGTGGCAGACAGCATATACAAGCACATGAAGATGATGCACGACAataataagaagaataagGCGCATGGTGATGCAGTAACATATACAAATGTAAGCTGTATCAGGCACGTTAATGTGGCAGACAGCATATACAAGCACATGAAGATGATGCACGACAataataagaagaataagGCGCATGGTGATGCAGTAACATATACAAATGTAAGCTGTATCAGGCACGTTCATGTGGCAGACAGCATATACAAGCACATGAAGATGATGCACGACAACAATAAGAAGAATAGGCCGCCCCGCGCCGTGCAACCAGTGAAAAAAGAAGAGCCctacccgggaatcgaactagCGAACCGCATGCAGTACTTCCAACAGAACATTGGAGGCAACCTAAACATAGTTCACATACAACCTTTAGGAATTACTCAGAATATTGTGTAA
Protein Sequence
MKEININIEGYNVNGICVGCLNYNRRMFYHPSVKECFRLLGNIDVPDGLEVQVCWECLARVKSAINFKVQMLKSYDFLIQYSREHTFLDSPNDFHSHATLNIEQTHVEYYECVPETETVEDEKEVEVKDEEEIEDKYTFDVAVKEETFDESYFQDIPVVDNDVTSDEDVQLSKLKEKETERVRKKRKSVKKKEMQRDRMPTNKKPRRTTRGLYDISQFEGAFQEMVRHGTSLRKAAIMFGLTHVTLQRYKKRRLDNNFPVTMGYARNSIFNTEQENLLTEYLNKYAEVYPGLCVKVVRKYALEYSQKLGLKTPKPWLVNGTAGVDWYRNFMYRNKGLEDRVVRITTKEKVRVFYDRLWMLLSQYNFCPCNIYCLDEIGVNIDEFADKVSLITTQNAISLQVSQIRFAYAANAEGDTIPPLFFIPRENEETDVEIKIENRQELRNETIFINFLKHDIDLKNLPDWTEDSNFLVYSPKRQKTKKEKNPDKKSRKLKNLPEELVELYTMSKDEMWSIRIEDLNSKEFQKLKYRCDDCIIAFNTEKLMHDHLNGKHQPKSEDCHQCSICQAYFLTKDNVAAHKALHLQGYRCKECGFNTTLKRRMLKHVGTHAPSGDAHVCSTCGTSFSTKSKLTYHRGVCRQERPQCDCCGKVFANKMTLKYHLKILPQNKDDKPKEKLFIPCKGCDKVFHSKKSYRAHVVIHNGLTYPCPICGKLFQWKRNLARHSRNHREREQGNLHECRACSKTFASRDCYNNHMRLSKKHVSQDTYQHECNYCGKKFATKWCLTDHIDWDHLKIIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKELEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSSSKIYKCKLCPATFMWQTSIYKHMKMMHDNNKKNKAHGDAVTYTNVSCIRHVNVADSIYKHMKMMHDNNKKNKAHGDAVTYTNVSCIRHVNVADSIYKHMKMMHDNNKKNKAHGDAVTYTNVSCIRHVNVADSIYKHMKMMHDNNKKNKAHGDAVTYTNVSCIRHVNVADSIYKHMKMMHDNNKKNKAHGDAVTYTNVSCIRHVNVADSIYKHMKMMHDNNKKNKAHGDAVTYTNVSCIRHVHVADSIYKHMKMMHDNNKKNRPPRAVQPVKKEEPYPGIELANRMQYFQQNIGGNLNIVHIQPLGITQNIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01231101;
90% Identity
iTF_01231101;
80% Identity
iTF_01231101;