Basic Information

Insect: Polia nebulosa
Gene Symbol: -
Assembly: GCA_951329385.1
Location: OX589603.1:29087961-29104546[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.074 13 8.3 0.4 2 23 43 64 42 64 0.91

2 16 0.81 1.4e+02 5.1 2.9 1 19 73 91 73 96 0.94

3 16 0.015 2.6 10.5 3.8 1 23 102 125 102 125 0.95

4 16 0.0043 0.74 12.2 2.0 1 23 127 149 127 149 0.97

5 16 7 1.2e+03 2.1 0.1 1 9 156 164 156 168 0.89

6 16 1.1 2e+02 4.6 0.2 1 23 183 206 183 206 0.88

7 16 0.06 10 8.6 0.4 3 23 235 256 234 256 0.95

8 16 0.066 11 8.5 1.1 1 16 263 277 263 281 0.80

9 16 6.9e-06 0.0012 21.0 0.3 1 23 291 314 291 314 0.91

10 16 0.00013 0.022 17.0 0.2 1 23 323 346 323 346 0.95

11 16 0.00021 0.036 16.4 0.4 2 23 352 375 351 375 0.95

12 16 0.86 1.5e+02 5.0 0.9 3 23 383 403 383 403 0.96

13 16 0.02 3.4 10.1 0.2 1 20 408 427 408 430 0.92

14 16 0.00017 0.03 16.6 2.0 1 23 436 458 436 458 0.97

15 16 2.9e-05 0.005 19.0 1.6 1 23 464 486 464 486 0.98

16 16 9.7e-05 0.017 17.4 2.2 1 23 492 515 492 515 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.074	13	8.3	0.4	2	23	43	64	42	64	0.91
2	16	0.81	1.4e+02	5.1	2.9	1	19	73	91	73	96	0.94
3	16	0.015	2.6	10.5	3.8	1	23	102	125	102	125	0.95
4	16	0.0043	0.74	12.2	2.0	1	23	127	149	127	149	0.97
5	16	7	1.2e+03	2.1	0.1	1	9	156	164	156	168	0.89
6	16	1.1	2e+02	4.6	0.2	1	23	183	206	183	206	0.88
7	16	0.06	10	8.6	0.4	3	23	235	256	234	256	0.95
8	16	0.066	11	8.5	1.1	1	16	263	277	263	281	0.80
9	16	6.9e-06	0.0012	21.0	0.3	1	23	291	314	291	314	0.91
10	16	0.00013	0.022	17.0	0.2	1	23	323	346	323	346	0.95
11	16	0.00021	0.036	16.4	0.4	2	23	352	375	351	375	0.95
12	16	0.86	1.5e+02	5.0	0.9	3	23	383	403	383	403	0.96
13	16	0.02	3.4	10.1	0.2	1	20	408	427	408	430	0.92
14	16	0.00017	0.03	16.6	2.0	1	23	436	458	436	458	0.97
15	16	2.9e-05	0.005	19.0	1.6	1	23	464	486	464	486	0.98
16	16	9.7e-05	0.017	17.4	2.2	1	23	492	515	492	515	0.96

Sequence Information

Coding Sequence: ATGGCTTCCCCGATGCAGCTGGCCGGGCTGGCCTCGCCGACGCAGCCGGAGGGCGCGGGCTGGCTGGAGCAGGCGGAGACCGTGCTGGGCCGCAAGCTCACCTCCATAGACTTGGTTGGCGGCATATACTGCAGCATCTGTCAGTCAACATTCGCTAACAAAAAAGATTACGACTCTCACTACGTGGACCACGACATAGGCGACGCAGACATCGGCTACACTTGTGTCGTGTGCCGCAAACAGTTCACCGGCTACCCAAGCTTCCGCAACCATTGCTACTTGATTCATGTTgctaaaaacaaacacaaGTGCATACATTGCcccaaaacattttcaaaacagTCAATTCTGAACAGTCACATTGACACAACTCACAATTTCAAATGTGAGCCTTGCCAAAAACAatttCCATCTAAAAAGGAACTACACACACATCAAGTTATCCATGGCAAGGATAAACCTCCGTACAATTGCCAAGAATGTGGGGAGACGATCGAGAGTATAGATATGTGCGAGTTCCACATTGACGAGCACTGCACGGCTCTGTATTCATGCCCCATCTGTAACGACGAGACCACCAACAACAAACTGGATGCTGCGAAACATCTCACAAAGCACTTTGGCGAAGTACTTATTGACCAATACGTTTCTGATTCCAAAATTGGTGAGGATTGCTCCATAGACATCCTTGGAGGAGTCCTCTGTAATTACTGCGATGAGTTATtcaagaatagaatagagttTGATACACACTTTGCAACAGAACATGGAGATCAGCCGCTGGTGTATTCCTGCAACATTTGTGGGAAACAGTATGACAAATATCATTTGTTTGGCGACCACTGCTACAATCATATGACCAAAGGCAGATTTGAATGCACGGACTGCGGCAAGACGTTCCCCCGTCTGTCGCTGCTGGTGACGCACACGGACGCCTACCACTCGTCGGGCTCGGTAGAGAAGCCGTTCCTGTGCGGCGAGTGCGGGCGCGGCTTCAAGTCTCCCAACCGCCTGCGCGAGCACACGCGCGTCGTGCACTCCACCAACACCATGCGCTGCACGGAGGACGGCTGCGATATGTCATTCTCGTCCCTGAAGGAGCTGCTCCTCCACCAGCGCTCGCACCGCTCGCACCGCGACAACTGGTGCCGGCAGTGCGGGCTGCAGTTCGTGTCGCTGGCGTCGTGCGAGCGGCACCTGGACGTGCACCGCAAGAAGCACTACGCCTGCCCCGTGTGCCGCCGCTCCTACCGGGAGAAGTACCTCATACTCAAGCATATACCATCTCATTTTGAGTGTGTGCTGCATGTTTGTAAAGTTTGTGGCaagGTATTCAACCTACGCAGCCGTCTCGTGCAGCACTCCAAAACCCACTCCGACCTCCGCGCCCACAAGTGCACCGTCTGCAACAAGGGTTTCATGAAGGCGTCCTTGCTGCAGCAGCACCTCAACATCCACACCGGCTTCCGGCCCTACAAGTGCACAGAGTGCTCCAAAACATTCGCCAGCTACCCCAACTGGCACAAACACATGGGCCGCATGCACAATCTCGAAAAACAAGACaacagaaaacaaaagaaaaatcaagAAATCACCTCAACAGAATTACCATCGCCACCTCCAGTAACTACAATCGATAATAATCACGATGCCAAGATGAAGATCGAATCGGGAATAGATTCTACTAGTTCTGAAATGTCTCTAGAGGCATACACGTTCACCGAGTCAGATGACAGCACGATGGATAGCCTCGACCCGACGGTCATACAGAATGACTGGTGCCTCTCGAATGAAAGCTCTATAATAGATGATAGTCTACAGTATACAGATATGTTGCCCGTAAATAACACTACATTTGATTTTGAAGTATGTCAGCAAGAGAGCGTGGtccccggcggcggcggcgccgaGCTGCGCGAGTACGGGCCCGAGTTCAACGTGCTGCTGGCGGACGCGGCGGGACCCGTCATCGACCTGGACGAGCCCTGCCTGCCGCACATCGACCCGCGGCTCACCATCAAGCCGGCCTGGGAGCCGCTCGTCACCAAGGTGTACGGCGCCTACGACGACTCCGACCTCACACGACTCTCCCTCATCGACACCGACATATACTGA
Protein Sequence: MASPMQLAGLASPTQPEGAGWLEQAETVLGRKLTSIDLVGGIYCSICQSTFANKKDYDSHYVDHDIGDADIGYTCVVCRKQFTGYPSFRNHCYLIHVAKNKHKCIHCPKTFSKQSILNSHIDTTHNFKCEPCQKQFPSKKELHTHQVIHGKDKPPYNCQECGETIESIDMCEFHIDEHCTALYSCPICNDETTNNKLDAAKHLTKHFGEVLIDQYVSDSKIGEDCSIDILGGVLCNYCDELFKNRIEFDTHFATEHGDQPLVYSCNICGKQYDKYHLFGDHCYNHMTKGRFECTDCGKTFPRLSLLVTHTDAYHSSGSVEKPFLCGECGRGFKSPNRLREHTRVVHSTNTMRCTEDGCDMSFSSLKELLLHQRSHRSHRDNWCRQCGLQFVSLASCERHLDVHRKKHYACPVCRRSYREKYLILKHIPSHFECVLHVCKVCGKVFNLRSRLVQHSKTHSDLRAHKCTVCNKGFMKASLLQQHLNIHTGFRPYKCTECSKTFASYPNWHKHMGRMHNLEKQDNRKQKKNQEITSTELPSPPPVTTIDNNHDAKMKIESGIDSTSSEMSLEAYTFTESDDSTMDSLDPTVIQNDWCLSNESSIIDDSLQYTDMLPVNNTTFDFEVCQQESVVPGGGGAELREYGPEFNVLLADAAGPVIDLDEPCLPHIDPRLTIKPAWEPLVTKVYGAYDDSDLTRLSLIDTDIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00851070;
90% Identity: iTF_00974033;
80% Identity: -