Lole021497.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493397.1:3375705-3389021[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.24 32 6.7 0.3 2 23 34 55 33 55 0.90 2 16 0.87 1.2e+02 4.9 2.9 1 19 64 82 64 87 0.94 3 16 0.007 0.94 11.5 4.8 1 23 93 116 93 116 0.95 4 16 0.0041 0.54 12.2 0.8 1 23 118 140 118 140 0.95 5 16 8 1.1e+03 1.9 0.2 1 9 147 155 147 158 0.88 6 16 1 1.4e+02 4.7 0.3 1 23 174 197 174 197 0.77 7 16 0.079 11 8.2 0.8 3 23 226 247 225 247 0.95 8 16 0.071 9.5 8.3 1.1 1 16 254 268 254 272 0.80 9 16 5.1e-05 0.0068 18.2 0.5 1 23 282 305 282 305 0.92 10 16 0.00014 0.018 16.9 0.2 1 23 314 337 314 337 0.94 11 16 0.0057 0.76 11.8 0.3 2 23 343 366 342 366 0.95 12 16 1.2 1.6e+02 4.5 0.5 3 23 374 394 374 394 0.96 13 16 0.021 2.8 10.0 0.2 1 20 399 418 399 421 0.92 14 16 0.00019 0.025 16.5 2.0 1 23 427 449 427 449 0.97 15 16 1.6e-05 0.0021 19.8 2.9 1 23 455 477 455 477 0.98 16 16 2.5e-05 0.0034 19.2 2.8 1 23 483 506 483 506 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCGCCGACGCAGCCGGAGGGCGCGGGCTGGCTGGAGCAGGCGGAGACCGTGCTGGGTCGCAAGCTCACCTCCATAGACTTGGTTGGCGGCATATACTGCAGCATCTGTCAGTCAACATTCGGTAACAAGAAGGACTACGACGTTCACTACGTGGACCACGACATAGGCGACGCAGACATCGGCTACACTTGTGTCGTGTGCCGCAAGCAGTTCACTGGCTACCCAAGCTTCCGCAACCATTGCTACTTGATTCATGTTGCTAGAAACAAGCACAAGTGCATACATTGCtccaaaacattttcaaaacagtCAGTTCTGAACAGTCACATTGACACAACTCACAATTTCACATGTGAGCCTTGCCAAAAACAATTTCCATCTAAAAAAGAACTTCAAACACATAAAGTTATTCACGGCAAGGACAAACCTCCATACAATTGCCAAGAATGTGGGGAGACGATTGAGAGTATAGACATGTGCGAGTTCCACATTGACGAGCACTGCTCCGCTCTGTACTCGTGCCCCATCTGTAACAACGAGACCACCAACAACAAACTGGATGCTGCCAAACATCTCACCAAACACTTTGGCGAAGTACTTATTGACAAATACGTTTCTGATTCCAAAATTGGTGAAGACTGCTCCATAGACATTCTTGGAGGAGTCCTCTGTAATTACTGTGATGAGTTAttcaagaatagaatagagttCGACACACACTTTACAACAGAACATGGAGACCAACCGTTGGTCTATTCCTGCAACATTTGTGGGAAACAGTATGACAAATATCATTTGTTCGGTGATCACTGCTACAATCATATGACCAAAGGTAGATTTGAATGCACCAACTGCAACAAGACGTTCCCTCGTCTCTCGCTGCTGGTGACCCACACAGAAGCCTACCACTCGTCGAGCTCGGTGGAGAAGCCGTTCCTGTGCGGGGAGTGCGGCCGCGGCTTCAAGTCGCCCAACCGCCTGCGCGAGCACACGCGCGTCGTGCACTCCACCGACACCATGCGCTGCTCGGAGGACGGCTGCGACATGTTATTCTCGTCGCTGAAGGAGCTCCTGCTGCACCAGCGCTCGCACCGCTCCGCGCGCGACAACTGGTGCCGGCAGTGCGGGCTGCAGTTCGTGTCGCTGGCGGCGTGCGAGCGACACCTGGACGTGCACCGCAAGAAGCACTACGCGTGTCCCGTGTGCCGCCGCTCCTACCGCGAGAAGTACCTCATACTCAAGCACATACCCAGCCACTTTGAGTCTGTGCTGCATGTTTGTAAAGTTTGTGGCAAGGTATTCAATCTACGCAGTCGTCTGGTGCAGCACTCAAAAACCCACTCCGATCTCCGCGCACACAAGTGCCACGTGTGCAACAAGGGCTTCATAAAGGCCTCCATGCTGCAGCAGCACCTCAACATCCACACCGGCTTCCGGCCCTACAAGTGCACCGAGTGCGTTAAGACCTTCGCCAACTACCCCAACTGGCACAAACACATGCGTCGCATGCACAACCTCGAAAAACAAGAcaacagaaaagaaaagaaaaataaactaatcaCCGCGCCTGAACTACCATCGCCACCTCCGGTCACTACGATCAATAATAACGATGCCAAAATGAAAATCGAATCTGGAATCGATTCTACGAGTTCGGAAATGTCACTAGAGACATACAATTTTACTACTGACAATGAGTCGGATGACAGCACCATGGATAGTTTGGATCCGACCGTAATACAGAAGGATTGGTGCATCTCTACTGAAAGCTCTATAATAGATGATAGCCTACAATATACAGATATGAAGGAATGGTGCGTCTCGAATGAAAGCTCTATAATAGATGATACTCTACAATATACAGATATGTTGCCAGTCAATAATACTACATTTGATTTTGATTGTCTCGGGCAAGTAAATCCCGAGGATACGGCGAAGACATGGGTTAACAAAGACCTGATTTTGCGTGAGTTGCCCTTCGCACCCGTAGAGCAGCACGGATTTGACATTGGACCCGATGATTTTGAGTTTGACTCTTCGGAAGTACCTCAGCAAGAGAGCGCGATAGCCGGCGGCGCGCGGGGCGGCGGCCTGGTGCTGCGCGAGTACGGGCCCGAGTTCAACGTGCTGCTGGGCGACGCGCCGGGGCCCTGCATCGACCTGGACGACCACTACCTGCCGCACATCGACCCGCGGCTCACCATCAAGCCGGGCTGCGCCGCGCAGCCGGCCTGGGAGCCGCTCATCACCAAGGTCTACAGCGCCTACGACGACCCCGACCTCAACCGACTCTCCATCCTCAACTCCGACATATActga
- Protein Sequence
- MASPTQPEGAGWLEQAETVLGRKLTSIDLVGGIYCSICQSTFGNKKDYDVHYVDHDIGDADIGYTCVVCRKQFTGYPSFRNHCYLIHVARNKHKCIHCSKTFSKQSVLNSHIDTTHNFTCEPCQKQFPSKKELQTHKVIHGKDKPPYNCQECGETIESIDMCEFHIDEHCSALYSCPICNNETTNNKLDAAKHLTKHFGEVLIDKYVSDSKIGEDCSIDILGGVLCNYCDELFKNRIEFDTHFTTEHGDQPLVYSCNICGKQYDKYHLFGDHCYNHMTKGRFECTNCNKTFPRLSLLVTHTEAYHSSSSVEKPFLCGECGRGFKSPNRLREHTRVVHSTDTMRCSEDGCDMLFSSLKELLLHQRSHRSARDNWCRQCGLQFVSLAACERHLDVHRKKHYACPVCRRSYREKYLILKHIPSHFESVLHVCKVCGKVFNLRSRLVQHSKTHSDLRAHKCHVCNKGFIKASMLQQHLNIHTGFRPYKCTECVKTFANYPNWHKHMRRMHNLEKQDNRKEKKNKLITAPELPSPPPVTTINNNDAKMKIESGIDSTSSEMSLETYNFTTDNESDDSTMDSLDPTVIQKDWCISTESSIIDDSLQYTDMKEWCVSNESSIIDDTLQYTDMLPVNNTTFDFDCLGQVNPEDTAKTWVNKDLILRELPFAPVEQHGFDIGPDDFEFDSSEVPQQESAIAGGARGGGLVLREYGPEFNVLLGDAPGPCIDLDDHYLPHIDPRLTIKPGCAAQPAWEPLITKVYSAYDDPDLNRLSILNSDIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00300524; iTF_00852079; iTF_00974033; iTF_01230906;
- 90% Identity
- -
- 80% Identity
- -