Pneb024834.2
Basic Information
- Insect
- Polia nebulosa
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951329385.1
- Location
- OX589597.1:3604173-3624057[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.042 9.5e+02 0.7 0.4 42 91 52 102 35 107 0.80 2 6 8.7e-69 2e-64 219.7 6.4 1 222 122 343 122 345 0.94 3 6 0.061 1.4e+03 0.2 0.0 197 222 404 429 393 430 0.86 4 6 0.061 1.4e+03 0.2 0.0 197 222 490 515 479 516 0.86 5 6 7.7e-16 1.7e-11 45.8 5.8 197 297 576 668 565 670 0.82 6 6 3 6.7e+04 -5.4 15.6 1 49 667 714 667 735 0.74
Sequence Information
- Coding Sequence
- ATGGGACAGCGCTCCGAGGTGGCCACGCCTGACAATAGTGACGAGGAGAGCGGGGACGCCTTCACTGACGGAGATTTTGGTGATTCCGACGACGAAACCATCGTCGAACGCCTTGATGAAGCTAAGCCTGCTCAAATGCCTATCAATGAAGCTGTTAAAGATGATATTCACAAGAGTCCAGCTACTAATGGCCACTCCAACGGTAGCGTAGAGGAGCAGCCCAGAATGAACGGCCGTAAGAATAGTGAAGCTCATTCGAGTGATATGGAAAACCAAAGCTTAGTATTATCGGATTTGCGCCGAGACTCACACGGCGACCAGAATCCTTCAATCGTCGGCATTCTCGGCGACCAGCAGAACCATGCGGAGCAGAGGTTAGCAGCGCGACGAGCGGCGCGGGCCGAGGCGCGAGAGATACGCATGCGTGAGCTGGAGCGACAGCAGCGCGAACAGGAGGACCATGCGGACAAGGCGTACGACATGTATGCCGGGAAGACTCCAGAGACGGTGGGACGACGCGGTGCGACGAGGCTGACGGCGCTCAGCCCGGCCGTACACTCTCCGAGACGGAGCTCGGAAGACTCCGTCGATGATGGCTTCAGCATCAAGGACCTTAGACACGAGTTGAAGGAGGTAGAAGAGAAGTTCCGCAAGGCGATGATCCTGAATGCGCAGTTGGACAACGACAAGGCTGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAAGAGTACGCGCAGCTGCAGCGCGAACACAAAGAGAAATGCTCATCATTCGAGCGTCTAAAGCGCGAGCACGAGTCCGTGTCCCGCGAGCTGAGCGCGGCACGAGACGCCGTACGAGCACGAGACGCGGCCGCCGAGGGCGCGGGCTTCGCCTTCGTGGACGCGGCGGCGCTGGAGCCGGGCGCGCTGCCGCCGGGCGCCGCCGTGGGCGCCGTGCCCGCGCTGGCGCTCCTCACGCACCAGGCGCACCAGCTGCTCCACGACGCGGGGGAGGGCACGCTCGGCGCACCAGCTGCTCCACGACGCGGGGGAGGGCACGCTCGGTACGTAACATATACCTTCGTGGACGGCGCGCTGCCGCCGAGCCCGCGCTGGCGCTCCTCACGCACCAGGCGCACCAGCTGCTCCACGACGCGGGGGAGGGCACGCTCGGTACGTAACATATACCTTCGTGGACGGCGCGCTGCCGCCGAGCCCGCGCTGGCGCTCCTCACGCACCAGGCGCACCAGCTGCTCCACGACGCGGGGGAGGGCACGCTCGGCGCACCAGCTGCTCCACGACGCGGGGGAGGGCACGCTCGGTACGTAACATATACCTTCGTGGACGGCGCGCTGCCGCCGAGCCCGCGCTGGCGCTCCTCACGCACCAGGCGCACCAGCTGCTCCACGACGCGGGGGAGGGCACGCTCGGTACGTAACATATACCTTCGTGGACGGCGCGCTGCCGCCGAGCCCGCGCTGGCGCTCCTCACGCACCAGGCGCACCAGCTGCTCCACGACGCGGGGGAGGGCACGCTCGGCGCACCAGCTGCTCCACGACGCGGGGGAGGGCACGCTCGGTACGTAACATATACCTTCGTGGACGGCGCGCTGCCGCCGAGCCCGCGCTGGCGCTCCTCACGCACCAGGCGCACCAGCTGCTCCACGACGCGGGGGAGGGCACGCTCGGTACGTAACATATACCTTCGTGGACGGCGCGCTGCCGCCGAGCCCGCGCTGGCGCTCCTCACGCACCAGGCGCACCAGCTGCTCCACGACGCGGGGGAGGGCACGCTCGACGTGCGGTTGCAAAAGCTGCTGAGCTCGAAGCAGGCGCTGGAGTCGGAAGTGCGTAAGCTGAAACTGCAGCTGAACGAGGAACGAGCCGCGCGGCAGAACGGGGTCACCAACCATCACGACCAGGAGTACGAGAATGAACTGGAGACAGTCCGCAAGGCAGTGTCGGAGGCGAAGGGCCGGGCGGCGCGCGCGGAGGCCGAGGCGGCGCTGCAGGCCGCGCACGTCGCGCGACTCGAGGCGCAGCTGGCGAGGCTCAGGGCCCGCCAGGACCACCAGGACGAGCACGAGGAACAGCTCAAACAGGAACGCCGTAAACTGCAGAGAGAGGCTCGGGAAGCACTCAACCGGGTCGAAGAGCTGGAGACAGAGAACAGCCACCTCACGAAACGACTCGACAAGCTCAAGAACGCAAAGTCTGCTCTTCTCAAGGACCTGTGA
- Protein Sequence
- MGQRSEVATPDNSDEESGDAFTDGDFGDSDDETIVERLDEAKPAQMPINEAVKDDIHKSPATNGHSNGSVEEQPRMNGRKNSEAHSSDMENQSLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPETVGRRGATRLTALSPAVHSPRRSSEDSVDDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSFERLKREHESVSRELSAARDAVRARDAAAEGAGFAFVDAAALEPGALPPGAAVGAVPALALLTHQAHQLLHDAGEGTLGAPAAPRRGGGHARYVTYTFVDGALPPSPRWRSSRTRRTSCSTTRGRARSVRNIYLRGRRAAAEPALALLTHQAHQLLHDAGEGTLGAPAAPRRGGGHARYVTYTFVDGALPPSPRWRSSRTRRTSCSTTRGRARSVRNIYLRGRRAAAEPALALLTHQAHQLLHDAGEGTLGAPAAPRRGGGHARYVTYTFVDGALPPSPRWRSSRTRRTSCSTTRGRARSVRNIYLRGRRAAAEPALALLTHQAHQLLHDAGEGTLDVRLQKLLSSKQALESEVRKLKLQLNEERAARQNGVTNHHDQEYENELETVRKAVSEAKGRAARAEAEAALQAAHVARLEAQLARLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -