Pneb010278.1
Basic Information
- Insect
- Polia nebulosa
- Gene Symbol
- PAXBP1
- Assembly
- GCA_951329385.1
- Location
- OX589589.1:30561318-30598918[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-10 1.3e-05 26.9 0.0 6 61 521 577 516 612 0.78 2 2 9.2e-06 0.31 12.5 0.0 126 190 792 856 779 865 0.85
Sequence Information
- Coding Sequence
- ATGTCGTTGTTTCGAAAGCCGAAGAAGATTCAGCGCCGGGTGTTTTGTGCTGATGATGACGAAGatggagaaccagaggctccgccGCCACCGGTCATCAGTCAAGAAAAGGAGAAGAAGGAAAAGGAACCCAAGTCTTCTAAGAAAACTGCTCTGTTGAGTTTCGCCGACGAAGAAGAGGAAGACATAGAAGTATTCAAAGTCAAGAAGTCTTCTCAAAGTAAGAGATTAGCAAAGAAGCGTGAGAAAGAGAAGCAGAAGCGGGACGTGAGAACCGATGGTGATAATAACAAATATGACACTATTGTCATTGAGGACAAGCAAACTGAGCTCGACAACGACGTGCCCAAGCAAAAGAAAAAGGTGACACTAGAGGGGCTGATCCTGTCCGGTCGGGAGGCGCTGGCGGCGGACGGCGCGGGCGACGTGTCCGACGAGAGCGCCCCCGACGAGGAGGCGGACGAGGACGACAGGGGGTTCCACCGGTACCGCGCCGAGACCGTGAGGGCCGCAATCTTGGGCGCCCCGGGCCGCATTCCCGACGCCGCGCTGATACACGCCGCTCGCAAGACCAGACAGCAGGCTCGCGAGTTGggtggtggcggcggcggcgactACATTCCCGTGAAGTCCGAGTCCGCCCCGGGATCCCGGCTAGTGCGGGATGACGGCTCCGGGGATGATGAGGAGGAGGGCAGGATACTTGTCCGGGGACTGGACTTGCCCAGTGATAAGCCTAAACGTGGCACTGCAGCAGTTTCTGAAGGAGAGCTTGACAGCGAGTCCGAGGAGTGGGTGGCGCAACAGCTGCAGAAGGCGCGGCCTGTCCTCGCGGATCTGACTGGTGAAGCTGCAATAGAAGTAAACCCATTCTCGGTAGCGCCTCAGATGTCGGCGCCGGAACACTTGCGACCTCTAACGACTGGCTCGCAGCAACCCACGACTGCCAACGAGCTGGTGGAGGCATTGAAGAAACGGCTAGGAGAGCTCCAAGTAGAACGCGAAGCGACGTCAGAAACACAAAAGGAACTCCGCGACAGACTGCTGACTTCGGCCAGAATACGAGAGAGTCGGGCGTCGCGCTGTGGCGAGCTGGATGCGGCCTACAGGAGGGCGCAGGCTATACGCGGCTATCTGACAGACCTCATTGAGTGCCTGGATGAGAAGATGCCCCAACTGGAGGCGTTGGAAGCTCGCGCGCTGACGTTACACAAGCGGCGCTGCGAGTTCCTCGTAGAAAGGCGACGAGCTGACCTGAGGGACCAGGCGCAGGACGTACTCGCACCACCCGGTCGAGCCTCAAAGCCAGCAGACAACGAGGAGAAGACGCGGCGCGCCGCCGAGCGCGAGGGCCGGCGCCGCGCCAGGCGCCTCACGCGCGAGGCtctggccgccgccgccggcgcCGCGCTGCCACATCGTGACGGAGACTCCTCGGATGATGAGCTGCCTCCGCATGAGAGGCATCATTATACTCAGGAGCGGGaCGCCATCCGTCAACTATCAGCATCACTATTCAGCGACGCCCTGCCCGCGTGGCGCAGCGTGTCGGGCGTGTGCGGGCGCCTGGCGCGCTGGCGGGCCCGCGCTGCCGAGCTGTACACGGACGCCTATGTCGCCGACTGCTTGCCGAAGCTGCTGGCGCCTTACGTCAGGCATGAGCTTATCCTATGGAACCCACTAGCAGATGAAGACAATGAAGACTATGAGAAAATGGATTGGTACAAATGCCTTATGATGTACGGCGTCCGCACAGAGCGTTCCGTAGATGACTCCTCGGAGTCAGCGTCGGAGGGCGAGCTCGAGCCACCGCATGTCACCACCAGCACCGTGCGCGAGGACCCTGACCTGCTGCTGGTGCCCAGCATCGTCAGCAGGGTGGTGCTGCCTTGTCTCACAGCACCGTACGCGAGGACCCCGACCTGCGGCTGGTGCCCAGCATCATCAGCAGGGTGGTGCTGCCTTGTCTCACAGGTAGCCCCTCCCCCCCCCATCACCATCAGCACCGTATGCGAGAACCCCGACCTGCTGCTGGTGCCCAGCATCATCAGCAGGGTGGTGCTGCCTTGTCTCACAGGTAGCCCCCCCCCCcgctccccctccccccccatCACCACCAGCACCGTACGCGAGGACCCCGACTTGCTGCTGGTGCCCAGCATCATCAGCAGGGTTGTGCTGCCTTGTCTCACAGGGagccccccccctccccccatcACCACCAGCACCGTACGCGAGGACCCCGACCTGCTGCTGGTGCCCAGCATCATCAGCAGGGTGGTGCTGCCTTGTCTCACAGGTAGCCCCCCCCCCGCTCCCCCTCCCCCCATCACCACCAGCACCGTACGCGAGGACCCCGACTTGCTGCTGGTGCCCAGCATCATCAGCAGGGTGGTGCTGCCTTGTCTCACAGAGCTAGTGTCAGTCGCGTGGGACCCGGTGAGTGTGCGCTCGTGCATCCGCCTGCGCTCGCTGCTGATCCGCGCGGCAGGCCTGCCCACGTGCTCCGCTGCACTACACCGCCTGTCCGCTGCGCTACGGACGAGGCTAGCAGCCGCGTTAGGAGCAGATGTGTTCCTGCCTGCGTTGCCGCCGCAAGTAATGGAGGGTTCGGGCGGCGCTTTCTGGCGGCGCTGCCTGGGCGCCGGCGTCCGCCTGCTGCGCGCCTCGCTGGCGCTCACCGGCCCGCCCGACCTGCTGCACGCTGACCCGCTCGTACTGTCGCTTATTGAAACACTATGCTGCGGAGCCGGCGCAGCAGGCGGGCCATACATAGCAAGTGCAGCATCCGCTCTCACGGACACGCTGCCGAGGACTGGTGCGCTACGCAAGCGAGCGCTCGCGCGGCTGTCTGCACTGGCCGCACTAGCACTGTCGAGACTGGAAACTGATAATCCGCTGCATTTGTGA
- Protein Sequence
- MSLFRKPKKIQRRVFCADDDEDGEPEAPPPPVISQEKEKKEKEPKSSKKTALLSFADEEEEDIEVFKVKKSSQSKRLAKKREKEKQKRDVRTDGDNNKYDTIVIEDKQTELDNDVPKQKKKVTLEGLILSGREALAADGAGDVSDESAPDEEADEDDRGFHRYRAETVRAAILGAPGRIPDAALIHAARKTRQQARELGGGGGGDYIPVKSESAPGSRLVRDDGSGDDEEEGRILVRGLDLPSDKPKRGTAAVSEGELDSESEEWVAQQLQKARPVLADLTGEAAIEVNPFSVAPQMSAPEHLRPLTTGSQQPTTANELVEALKKRLGELQVEREATSETQKELRDRLLTSARIRESRASRCGELDAAYRRAQAIRGYLTDLIECLDEKMPQLEALEARALTLHKRRCEFLVERRRADLRDQAQDVLAPPGRASKPADNEEKTRRAAEREGRRRARRLTREALAAAAGAALPHRDGDSSDDELPPHERHHYTQERDAIRQLSASLFSDALPAWRSVSGVCGRLARWRARAAELYTDAYVADCLPKLLAPYVRHELILWNPLADEDNEDYEKMDWYKCLMMYGVRTERSVDDSSESASEGELEPPHVTTSTVREDPDLLLVPSIVSRVVLPCLTAPYARTPTCGWCPASSAGWCCLVSQVAPPPPITISTVCENPDLLLVPSIISRVVLPCLTGSPPPRSPSPPITTSTVREDPDLLLVPSIISRVVLPCLTGSPPPPPITTSTVREDPDLLLVPSIISRVVLPCLTGSPPPAPPPPITTSTVREDPDLLLVPSIISRVVLPCLTELVSVAWDPVSVRSCIRLRSLLIRAAGLPTCSAALHRLSAALRTRLAAALGADVFLPALPPQVMEGSGGAFWRRCLGAGVRLLRASLALTGPPDLLHADPLVLSLIETLCCGAGAAGGPYIASAASALTDTLPRTGALRKRALARLSALAALALSRLETDNPLHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -