Pneb020650.1
Basic Information
- Insect
- Polia nebulosa
- Gene Symbol
- HmgD
- Assembly
- GCA_951329385.1
- Location
- OX589594.1:28075354-28078378[-]
Transcription Factor Domain
- TF Family
- HMG
- Domain
- HMG_box domain
- PFAM
- PF00505
- TF Group
- Other Alpha-Helix Group
- Description
- High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 2.2e-22 4.1e-19 70.6 4.6 1 68 37 102 37 103 0.98 2 7 2.2e-20 4.1e-17 64.2 3.1 4 68 177 239 174 240 0.96 3 7 2.2e-20 4.1e-17 64.2 3.1 4 68 322 384 319 385 0.96 4 7 2.2e-20 4.1e-17 64.2 3.1 4 68 459 521 456 522 0.96 5 7 4.2e-21 7.6e-18 66.5 3.4 4 68 604 666 601 667 0.96 6 7 2.2e-20 4.1e-17 64.2 3.1 4 68 741 803 738 804 0.96 7 7 3.1e-10 5.7e-07 31.7 0.0 4 36 886 918 883 920 0.93
Sequence Information
- Coding Sequence
- ATGGCTTTGTACGGTGCGGCGAATGGTGACGCCGAAGAAATTACGTATCAACCTAAAGATAATAAATGCGGTTTAGATGCCATAAGGAATTTTATGAAGTCGGGCAGGCCCAAGCGTCCTATGTCAGCTTACATGCTGTGGCTGAACAGCGCGAGAGAACAGATCAAGTCGGAGAGTCCCGGCATGAAGGTGACGGAGTTAGCCAAAAAGGGAGGTGACATTTGGAAGTCGATGAAGGACAAAACTGAGTGGGAGGAAAAGGCTGCCAAGGCCAAGGAGCAGTATAAAAAAGACAGGGCTTTGTACGACGCGGCCAATAGTGGCGACACTGACAACGACATTGACGACGACAATGACAACGACACTGACGACGACATTGACGATGACAATGACGACGACATCGACGACGACAATGATGACGACATTGACGACGACACTGACGACGAAGAAATTACGCATCAACCTAAAGATAATAAATCCGGTTTAGATGCCACCAAGAACTGTATGCAATCGGTCAGGCCCAGGCTTCCTATGTCAGCTTACATGCTGTGGCTGAACAGCGCGAGAGAACAGATCAAGTCGGAGAGTCCCGGCATGAAGGTGACGGAGTTAGCCAAAAAGGGAGGTGACATTTGGAAGTCGATGAAGGACAAAACTGAGTGGGAGGAAAAGGCTGCCAAGGCCAAGGAGCAGTATAAAAAAGACAGGGCTTTGTACGACGCGGCCAATAGTGGCGACACTGACAACGACTTTGACGACGACAATGACAACGACACTGACGACGACATTGATGACGACATTGACGATGACAATGACAACGACACTAACGACGACATTGACGACGACAATGACGATGACATTGACGACGACACTGACGACGAAGAAATTACGCATCAACCTATAGATAATAAATCCGGTTTAGATGCCACCAAGAACTGTATGCAATCGGTCAGGCCCAGGCTTCCTATGTCAGCTTACATGCTGTGGCTGAACAGCGCGAGAGAACAGATCAAGTCGGAGAGTCCCGGCATGAAGGTGACGGAGTTAGCCAAAAAGGGAGGTGACATTTGGAAGTCGATGAAGGACAAAACTGAGTGGGAGGAAAAGGCTGCCAAGGCCAAGGAGCAGTATAAAAAAGACAGGGCTTTGTACGACGCGGCCAATAGTGGCGACACTGACAACGACATTGACGACGACAATGACAGCGACACTGACGATGACATTGACGATGCCAATGACGACGACATCGACGACGACAATGATGACGACGTTGACGACGACACTGACGACGAAGAAATTACGCATCAACCTAAAGATAATAAATCCGGTTTAGATGCCACCAAGAACTGTATGCAATCGGTCAGGCCCAGGCTTCCTATGTCAGCTTACATGCTGTGGCTGAACAGCGCGAGAGAACAGATCAAGTCGGAGAGTCCCGGCATGAAGGTGACGGAGTTAGCCAAAAAGGGAGGTGACATTTGGAAGTCGATGAAGGACAAAACTGAGTGGGAGGAAAAGGCTGCCAAGGCCAAGGAGCAGTATAAAAAAGACAGGGCTTTGTACGACGCGGCCAATAGTGGCGACACTGACAACGACTTTGACGACGACAATGACAACGACACTGACGACGACATTGATGACGACATTGACGATGACAATGACAACGACACTAACGACGACATTGACGACGACAATGACGATGACATTGACGACGACACTGACGACGAAGAAATTACGCATCAACCTATAGATAATAAATCCGGTTTAGATGCCACCAAGAACTGTATGCAATCGGTCAGGCCCAGGCTTCCTATGTCAGCTTACATGCTGTGGCTGAACAGCGCGAGAGAACAGATCAAGTCGGAGAATCCCGGCATGAAGGTGACGGAGTTAGCCAAAAAGGGAGGTGACATTTGGAAGTCGATGAAGGACAAAACCGAGTGGGAGGAAAAGGCTGCCAAGGCCAAGGAGCAGTATAAAAAAGACAGAGCTTTGTACGACGCGGCCAATAGTGGCGACACTGACAACGACATTGACGACGACAATGACAACGACACTGACGACGACATTGACGATGACAATGACAACGACATCGACGACGACAATGATGACGACATTGACGACGACACTGACGACGAAGAAATTACGCATCAACCTAAAGATAATAAATCCGGTTTAGATGCCACCAAGAACTGTATGCAATCGGTCAGGCCCAGGCTTCCTATGTCAGCTTACATGCTGTGGCTGAACAGCGCGAGAGAACAGATCAAGTCGGAGAGTCCCGGCATGAAGGTGACGGAGTTAGCCAAAAAGGGAGGTGACATTTGGAAGTCGATGAAGGACAAAACCGAGTGGGAGGAAAAGGCTGCCAAGGCCAAGGAGCAGTATAAAAAAGACAGGGCTTTGTACGACGCGGCCAATAGTGGCGACACTGACAAGGACATTGACGACGACAATGACAACGACACTGACGACGACATTGACGACGATATTGACGATGACAATGACAACGACACTAACGACGACATTGACGACGACAATGACGATGACATTGATGACGACACTGACGATGAAGAAATTACGCATCAACCTAAAGATAATAAATCCGGTTTAGATGCCACCAAGAACTGTATGCAATCGGTCAGGCCCAGGCTTCCTATGTCAGCTTACATGCTGTGGCTGAACAGCGCGAGAGAACAGATCAAGTCGGAGAGTCCCGGCATGAAGGTGACGGAGTTAGCCAAAAAGGGAGCGACACTGACGACGACATTGACGATGCCAATGACGACGACATCGACGACGACAATGATGACGACGTTGACGACGACACTGACGACGAAGAAATTACGCATCAACCTAAAGATAATAAATACGGTTTAA
- Protein Sequence
- MALYGAANGDAEEITYQPKDNKCGLDAIRNFMKSGRPKRPMSAYMLWLNSAREQIKSESPGMKVTELAKKGGDIWKSMKDKTEWEEKAAKAKEQYKKDRALYDAANSGDTDNDIDDDNDNDTDDDIDDDNDDDIDDDNDDDIDDDTDDEEITHQPKDNKSGLDATKNCMQSVRPRLPMSAYMLWLNSAREQIKSESPGMKVTELAKKGGDIWKSMKDKTEWEEKAAKAKEQYKKDRALYDAANSGDTDNDFDDDNDNDTDDDIDDDIDDDNDNDTNDDIDDDNDDDIDDDTDDEEITHQPIDNKSGLDATKNCMQSVRPRLPMSAYMLWLNSAREQIKSESPGMKVTELAKKGGDIWKSMKDKTEWEEKAAKAKEQYKKDRALYDAANSGDTDNDIDDDNDSDTDDDIDDANDDDIDDDNDDDVDDDTDDEEITHQPKDNKSGLDATKNCMQSVRPRLPMSAYMLWLNSAREQIKSESPGMKVTELAKKGGDIWKSMKDKTEWEEKAAKAKEQYKKDRALYDAANSGDTDNDFDDDNDNDTDDDIDDDIDDDNDNDTNDDIDDDNDDDIDDDTDDEEITHQPIDNKSGLDATKNCMQSVRPRLPMSAYMLWLNSAREQIKSENPGMKVTELAKKGGDIWKSMKDKTEWEEKAAKAKEQYKKDRALYDAANSGDTDNDIDDDNDNDTDDDIDDDNDNDIDDDNDDDIDDDTDDEEITHQPKDNKSGLDATKNCMQSVRPRLPMSAYMLWLNSAREQIKSESPGMKVTELAKKGGDIWKSMKDKTEWEEKAAKAKEQYKKDRALYDAANSGDTDKDIDDDNDNDTDDDIDDDIDDDNDNDTNDDIDDDNDDDIDDDTDDEEITHQPKDNKSGLDATKNCMQSVRPRLPMSAYMLWLNSAREQIKSESPGMKVTELAKKGATLTTTLTMPMTTTSTTTMMTTLTTTLTTKKLRINLKIINTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -