Pcha000921.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- grn
- Assembly
- GCA_002278615.1
- Location
- NEEE01006594.1:6753-45224[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-19 4.9e-16 58.3 7.5 1 35 28 61 28 62 0.97
Sequence Information
- Coding Sequence
- ATGAATGGACAAAACCGGCCACTCATCAAACCCAAAAGAAGACTGtCATTGCAAAGTGCTGCAAGAAGAGCGGGTACGTCTTGTGCAAATTGCAAGACGACCACGACAACTTTATGGCGTCGAAACCAAAATGGAGAGCCTGTTTGCAACGCCTGCGGACTTTACTATAAACTACACAACgTAAACCGACCATTGACGATGAAAAAAGAGGGTATCCAAACACGAAATCGAAAGTTATCTTCAAagagtaaaaagaaaaaaggtgGTTCAGCTTGCCTTTCGTTAGGAGGTGTCATGAGTGATATGATTAAACCTCTTGATCCAACGGGCAAGGGAGCTTTTGGAGCCACCGGTTTTGGAGCAAGCATGGgaAATAACCATCATCATTTGAACCCAGCGTTACACCCACACCACGCAGCTATGAGCCATTGGTATCACAACGGTGGCTCAGTACATCATCACCAAGGCTTTGTTGCTGCTGGTCCTCCACCACCTGCTCCACCCCCTTCTGCAGCAAGCTACCACCACCATATGAGTTCTCTTAGTGCTGCTGCAGGACTTGGTTTAGCGGCGTCTAATGGCATGacaAGTTGGAGGTCAGAATACACGTGA
- Protein Sequence
- MNGQNRPLIKPKRRLSLQSAARRAGTSCANCKTTTTTLWRRNQNGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGGSACLSLGGVMSDMIKPLDPTGKGAFGATGFGASMGNNHHHLNPALHPHHAAMSHWYHNGGSVHHHQGFVAAGPPPPAPPPSAASYHHHMSSLSAAAGLGLAASNGMTSWRSEYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057597;
- 90% Identity
- iTF_01349296; iTF_01039794;
- 80% Identity
- -