Avir016589.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- grn
- Assembly
- None
- Location
- GWHAMMQ00000089:235810-260534[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-19 3.3e-16 58.5 7.5 1 35 15 48 15 49 0.97
Sequence Information
- Coding Sequence
- ATGTTAAGTTTACAAAGTGCAGCAAGGAGAGCTGGTACGAGTTGTGCTAACTGCAAGACCACAACGACAACACTTTGGAGGCGTAATCAGAATGGAGAACCTGTTTGTAATGCCTGCGGACTATACTACAAATTGCATAATGTGAACAGGCCGCTAACAATGAAAAAAGAAGGAATCCAAACGCGCAATCGGAAATTATCATCAAAAAGCAAAAAGAAAAAGAGTGGTGCATCGTGTTTGTCATTAAATATGATGGGTGATATGATGAAACCTTTAGATGGAAGTAAAGGTGGATTTGGAGGTGGTTTTGGAGCGGGAATGGGTGGTGGCCATCCCCATTTAAACGCTGCCTTGCACCCACATCATGCAATGAGTCATTGGTATCAACATCAACATACACAAGGATTTGTTTCTGGACCTCCACCACCCGCACCCCCACCCGCAGCCAGTTACCATCATCACATGAGTTCCTTGAGCGCCGCAGCTGGTCTAGGCCTGACATCAAATGGAATGACGAGTTGGAGATCAGAATATACGTGA
- Protein Sequence
- MLSLQSAARRAGTSCANCKTTTTTLWRRNQNGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKSGASCLSLNMMGDMMKPLDGSKGGFGGGFGAGMGGGHPHLNAALHPHHAMSHWYQHQHTQGFVSGPPPPAPPPAASYHHHMSSLSAAAGLGLTSNGMTSWRSEYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01311916; iTF_00814074; iTF_01566651; iTF_01283932; iTF_00632428; iTF_01058786; iTF_00430252; iTF_00631801; iTF_01230164; iTF_01039794; iTF_01349296; iTF_00261082; iTF_01216479; iTF_00839095; iTF_00722709;
- 90% Identity
- iTF_00261082;
- 80% Identity
- -