Pcha014101.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- RpS23
- Assembly
- GCA_002278615.1
- Location
- NEEE01002099.1:1217-4235[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.15 6.4e+02 0.8 0.1 26 47 76 98 62 101 0.77 2 5 0.0094 40 4.7 0.0 20 43 100 123 97 128 0.88 3 5 0.00056 2.4 8.6 0.1 23 47 131 155 123 160 0.83 4 5 0.0004 1.7 9.1 0.1 23 52 159 188 153 188 0.90 5 5 0.0011 4.5 7.7 0.8 21 48 185 212 181 219 0.86
Sequence Information
- Coding Sequence
- ATGGATGTAAAAGAAGAGCACGATGGCTTTTACGATAGGAGATTGGAGCCcgattgtattttaattgattctgatGAATCAAATGTATCACTTTCAACAAGTAATACAACAGACTCATCAATGAaagattttaagtttaataacgAAAAAATGCAGTTAGAAAACCatgataatatgaaaattcgtCGAAGTTCGACAAGTCCCAGGGAGTCCGGACCTTTGCAAGAATGCCCAACGtgtcacaaatattttaaacggcTTTCTTCTCATATGTTAACACATTTAGATCTAAAAAACGCGTCAGATCGACCATTTACTTGTACATATTGtccaaaagtatttaaaaatttgagcaATTTAACAATTCATACCAGATCTCATACCGGGTTTAAACCGTACATTTgcgaaatttgtaataaaggtTTTACGCAATCGGGTAATTTAGTTCATCATTTACGGATTCATACCGGAAGTAGGCCCTATAAATGTCCTATTTGTGATAGGGGATTTACCCAACCAGGCAATTTAGGCAATCATATGAGACTTCATAATCAAGAAAAACCTTTCCGTTGCCATTTATGTGATCGGGCTTTTACTCAATCGTCGAATTTAAACTctcatattagaaataatcatAAAGAATTCGCGCAAGCTAATATGCTCGCTAAGTTAGAACTTATGAGGTCTGAGATGCGATCAAAATCTCCAGAAATTGATATAACTGGACAcTTTTTATTGGGTGTAGGTAAACCCCGTGGTCTTCGCACTGCAAGAAAACATGTGAACCATCGCAGAGAACAACGATGGGCTGATAAGGACTACAAAAAAGCCCATTTGGGCACACGTTGGAAGGCCAATCCTTTCGGTGGTGCTTCTCATGCCAAGGGAATTGTTCTTGAAAAAGtTGGCGTTGAAGCCAAACAGCCTAACTCTGCCATCCGCAAATGCGTGAGGGTGCAGCTGATCAAGAACGGTAAAAAGATTACAGCGTTCGTACCCAGAGATGGTTGTCTTAACCATATTGAGGAAAACGACGAAGTCTTAGTTGCCGGTTTCGGTCGTAAGGGCCACGCCGTCGGTGATATTCCCGGAGTAAGATTTAAGgttGTTAAGGTAGCCAATGTTTCCCTGTTAGCGTTATACAAAGAAAAGAAAGAACGCCCAAGATCGTAA
- Protein Sequence
- MDVKEEHDGFYDRRLEPDCILIDSDESNVSLSTSNTTDSSMKDFKFNNEKMQLENHDNMKIRRSSTSPRESGPLQECPTCHKYFKRLSSHMLTHLDLKNASDRPFTCTYCPKVFKNLSNLTIHTRSHTGFKPYICEICNKGFTQSGNLVHHLRIHTGSRPYKCPICDRGFTQPGNLGNHMRLHNQEKPFRCHLCDRAFTQSSNLNSHIRNNHKEFAQANMLAKLELMRSEMRSKSPEIDITGHFLLGVGKPRGLRTARKHVNHRREQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229997;
- 90% Identity
- iTF_01229997;
- 80% Identity
- iTF_01229997;