Pcha014515.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- -
- Assembly
- GCA_002278615.1
- Location
- CM008231.1:3064535-3067966[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0039 17 5.9 0.1 25 45 141 161 130 164 0.83 2 6 0.0039 17 5.9 0.1 21 44 165 188 161 191 0.90 3 6 0.0037 16 6.0 0.2 21 44 193 216 189 220 0.90 4 6 0.0019 8.4 6.9 0.1 21 52 221 252 219 252 0.88 5 6 0.0091 39 4.7 0.1 21 52 249 280 247 281 0.89 6 6 8.7e-06 0.037 14.4 0.1 23 44 279 300 276 310 0.86
Sequence Information
- Coding Sequence
- ATGACTGAAGAAAACACATCCGATGTTTATGagGAAACCGGTGAATCTGATTCAGAggatgtatgtacatattttccatttattaaGATAGAAAACGATGGTTCAGTGTATATTGATGGGCAACCTAGTAGTCAAGATGCTTCTCAAATGAGTATTGAATCAGCAGAAGTTCTCGTTTTGCCATATGGAGGATTAGTTGAACAATTAGAAACATTAGACGATAGTGAGACGCAATATGCACAGgTTATTGAAGAAGTACCCGAACATGCAATCATTGAAGCAGCAATCGTCAGCGAAGAAACACAAGATATGTCCGATAATCATATGCATGACCATAATTACGAAGAAGGGGTGCGAACGCAAGAACAACCTACAAAATCCGGCTATTCATACATTGTACAGCAATTAGaacaatacaaaaattcaTGTAATATATgtgaaaaaacttttaatacatCCGCAAGTTTAAAAAGGCATTTAAGGACCCATACCGGTGAAAGACCCTTCCAATGCCAAatatgtgaaaaatatttctcacaACAAAGTAACTTGTGGAAACATGTTAGAACGCATACAGGTGAACGGCCATTCGAGTGTCCGCATTGTAAGAAACGATTTTCCCAAAGAGCCAATATGAAAAAACATATGATAATACATACTGGCGAACGGCCTTATGTTTGCTTTTTGTGTGGACGGGCTTTCACACAACAAGCAAACTTAAGTAAACATATGAGGCTGCATACAGgtGAGAAACCATTCGGATGTTCCTATTGTGATAAACGGTTTACGCAAAGATCTAACCTTCAAAAACATGAGCACCTTCATGAAGGTATAAAACCATATACTtgtgaaatatgttttcaagCTTTTACACAACAGAGTAATCTTCGAAAACATGAAATGATGcacaacaatattaaaaaatttgtctgTGACATCTGTAATAAAGGatatgtacaaaaaattagtttatctaAACATAAACAGAGATGCGGTGTTACAGAAGTGAAACTTGTGGCACTTGAAGATGCTGAtagtaatgataaaataataactgatcaagtaaaattaataaaaactataaatacagATTCGCAGTGCCTTGAAGAATATGAGGAaggcataattaaaataatacaaacagataaagattttatttttacaaccgATTAA
- Protein Sequence
- MTEENTSDVYEETGESDSEDVCTYFPFIKIENDGSVYIDGQPSSQDASQMSIESAEVLVLPYGGLVEQLETLDDSETQYAQVIEEVPEHAIIEAAIVSEETQDMSDNHMHDHNYEEGVRTQEQPTKSGYSYIVQQLEQYKNSCNICEKTFNTSASLKRHLRTHTGERPFQCQICEKYFSQQSNLWKHVRTHTGERPFECPHCKKRFSQRANMKKHMIIHTGERPYVCFLCGRAFTQQANLSKHMRLHTGEKPFGCSYCDKRFTQRSNLQKHEHLHEGIKPYTCEICFQAFTQQSNLRKHEMMHNNIKKFVCDICNKGYVQKISLSKHKQRCGVTEVKLVALEDADSNDKIITDQVKLIKTINTDSQCLEEYEEGIIKIIQTDKDFIFTTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229898;
- 90% Identity
- iTF_01229898;
- 80% Identity
- iTF_01229898;