Pcha012455.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- -
- Assembly
- GCA_002278615.1
- Location
- NEEE01028972.1:1-3535[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00099 0.087 13.6 1.1 3 23 19 39 18 39 0.99 2 14 4.2e-05 0.0037 17.9 0.1 1 23 152 174 152 174 0.98 3 14 0.077 6.8 7.6 0.2 1 23 180 203 180 203 0.96 4 14 1.1e-05 0.00097 19.7 4.1 1 23 230 252 230 252 0.98 5 14 0.0012 0.11 13.3 0.1 1 23 267 289 267 289 0.95 6 14 0.0041 0.36 11.6 2.4 1 23 295 318 295 318 0.94 7 14 0.022 2 9.3 2.2 2 19 326 343 326 344 0.96 8 14 9.7e-06 0.00086 19.9 4.0 1 23 353 375 353 375 0.97 9 14 0.046 4.1 8.3 0.3 2 23 381 402 380 402 0.97 10 14 6.8e-06 0.0006 20.4 0.4 1 23 410 432 410 432 0.98 11 14 0.0029 0.26 12.1 0.2 3 23 440 460 438 460 0.97 12 14 9.3e-05 0.0082 16.8 0.3 1 23 466 488 466 489 0.95 13 14 0.013 1.1 10.1 1.5 1 23 503 525 503 525 0.96 14 14 0.00049 0.043 14.5 0.2 1 20 869 888 869 891 0.93
Sequence Information
- Coding Sequence
- AAAGCCAACCTGATGAATCACATGGTCGCACATCAGACGGATCGGCCACACGGTTGTAACCTATGTGGTGCTCGATACATCCGCAAGTGTGATCTCATgaaccatttaaaaattcatgctTATGTTCCTGATCCAGATGCGTTGGATGAGGATGAGCTACCACCACTTTTAGAATCCGACCCCGAAAAATCATCGAAGAAAAAGAAACAGGCGAAGAAACGAAAACAAATCTCATCACCATCGAAACCGAAAATCAAACAAGAAGCGCTCGACTCCTCTGATGATAGGTACGAAGTACCGTCGCGTTCATACAACTACGTTGAAGAGGACGTTCGTTTGCTAACAGAAATGGAAAATCACGTGAATTCAAATCGAAACGACAGCTTTAGTAGCTACAACGAAATGGACAACATGACCGAAGTGCGATATCCTATTTTAGATCCTCGTAAACCTTTTGTTTGTCAACATTGTGGTGTTGCGTTTGCACGAGAAAAAGCTCTAGCTTCGCATGCTCGAATACATGCTGGCGATTCTCCATTTGAATGTGAAACTTGCAATGAAATGTTCTGGGATGTGCAAGTTTTACGTGAACATGTTCGTACTAAACACGGCGGTATGGGTGCTACAGAATCAGACTATGAAGATATAGATGATGATGATTATGTAGATGATAGTAAATACGgcgatttttattgtaaagtttGTGGCATGAGATTCCATCGGACTGATTTACTGCGTCGTCATATGCGAAACCACGATGACGTTAAAGAAGAATTCAATACTGATAATGAGTACGGGCATGTATGCAATGTATGCGGACAATCATTTAATGAAGCTCTGGATTTATTAGCTCACGCAGAAAGCCATGCCCGACAGTTAGGTCACCGTTGTATGTTATGTGGTGAATGCTTCACAGATGAAACTTCAATGGCAAATCATGTAATGCAACGACATGGTAAAAATATGCCACCAAACACTTGCATGCTTTGTGGGAAAACATGTAAAGATCGTCGGACACTTTTAAAACACTCCTGGGATCATTCTCGTGAGAAATTATTCTCTTGTTCTAAATGTGGAAAGAGTTTCCACAATAAGGCAAGATTGAAACGTCACATGGTTTCGCATCGCAATAAAGCAGTTCAATGTGACATTTGTGGAGATGATTTCCCTGACGGTAGATCTTTAATGAACCATAGACATAGTCATAGTAATATATCTGGCAGACAGTTTCCATGTAGAGAATGTGGTAAAACTTTTGGAAGTAGAAGTTCGCAACAAATTCACATTCGTATTCATACTGGTGAGCGCCCTTACGGTTGTCGTTTTTGTTGGAAAGCGTTTGCGGATGGTGGTACATTACGCAAACATGAACGTATTCATACGGGCGAGAAGCCATATGCATGCGCTGTATGTCCTCGTGCTTTCAATCAACGAGTTGTACTACGTGAACATATCCGGTCTCATCACTCAGGACCAGATCCACAATATAGTCACACCATGACTCCATATTGTTGTGCAGTTTGTAACGATATGTTCTCTACATCCcaagatttaataatacactTAATACATCATTGTGATTTAAATACTGCAATGAAACGACAGCCACAAGTTGGACCACGGAAATATAAACGTAGGAGAAAATTGAAACCCCATGAATTGGAATTGATATCTAATAGAGTAGATAATGATAACGATGATGTATTTTCTGATTCCGATGAAAAAAGTAGCAGTAGAAGAAGAAGTACATCAAAGAGAACACCAAGTAAACAACCAATAACACCAAAAgtggaaaataaaacaaatctagAAAAAGATTACGAGAGTGTATTCCAAAGCTTTGAATCAGCAAGTCAAATAATCAGTTCAATTGTGAATTCAAAACCAAGTAGTACACGcggtagaaaaaaattgaaaccgTCTGAAGCACAAATGTCTTCGATGCCTTCTAGACCAAAAATGATCCATACACAAAAGACACGTGTGCCTATAGATGCACAAGGAGATGGTCGAGGTCGTCACAAgacaaaaacattaataacacGAACAACACCTGCTGAACATGTTATTAAAGAGAAAGAAAAGCCTATATCAAGTGATCATGAAGGCGATCAAAACGGCGATCAGAATGATTATCAAGATCAAGAGAACACGAATCCCGACTACCATACAATGATTATCAAACCTGATCCCGATGAACCaaagaataatgaaataattgaaatggaATATCAAACAGTTGAAACTGAAATTCCAGATGTGGCTAATGAAGAAACAATACTTGCACAAGTTGATGATGTTCACGCTGTTGCAAATTCCAGTCAGTCGACACCAGTTAGTATgataaaagtaacaaaaaataccGGTAAACGTAACAATAGTTTAACACCGGGTCGACATATCATCGGACCAGGCAATAAAGTTATTAGAATTGTTAAGGGCGGTATGCTAGTTAGTAAAACGATTAAAAAAGAACCTGAATTACTTGTTCCAGATTTAGACACCAATCATCAACAACTACTAAAACAAGTTAAACAAGAGATTATTGAGCCGAGTCCGCTGCACGAATTGGCTGAACTGTCAATGCAACATGCACAGAATCAATTCCGGTGCGAAATGTGCAGTGCTACTTTCACAGATCGTTCACAACTTTTGATGCATGTGCCCGTTCATATCTGA
- Protein Sequence
- KANLMNHMVAHQTDRPHGCNLCGARYIRKCDLMNHLKIHAYVPDPDALDEDELPPLLESDPEKSSKKKKQAKKRKQISSPSKPKIKQEALDSSDDRYEVPSRSYNYVEEDVRLLTEMENHVNSNRNDSFSSYNEMDNMTEVRYPILDPRKPFVCQHCGVAFAREKALASHARIHAGDSPFECETCNEMFWDVQVLREHVRTKHGGMGATESDYEDIDDDDYVDDSKYGDFYCKVCGMRFHRTDLLRRHMRNHDDVKEEFNTDNEYGHVCNVCGQSFNEALDLLAHAESHARQLGHRCMLCGECFTDETSMANHVMQRHGKNMPPNTCMLCGKTCKDRRTLLKHSWDHSREKLFSCSKCGKSFHNKARLKRHMVSHRNKAVQCDICGDDFPDGRSLMNHRHSHSNISGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPQYSHTMTPYCCAVCNDMFSTSQDLIIHLIHHCDLNTAMKRQPQVGPRKYKRRRKLKPHELELISNRVDNDNDDVFSDSDEKSSSRRRSTSKRTPSKQPITPKVENKTNLEKDYESVFQSFESASQIISSIVNSKPSSTRGRKKLKPSEAQMSSMPSRPKMIHTQKTRVPIDAQGDGRGRHKTKTLITRTTPAEHVIKEKEKPISSDHEGDQNGDQNDYQDQENTNPDYHTMIIKPDPDEPKNNEIIEMEYQTVETEIPDVANEETILAQVDDVHAVANSSQSTPVSMIKVTKNTGKRNNSLTPGRHIIGPGNKVIRIVKGGMLVSKTIKKEPELLVPDLDTNHQQLLKQVKQEIIEPSPLHELAELSMQHAQNQFRCEMCSATFTDRSQLLMHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01104958;
- 90% Identity
- iTF_01229931;
- 80% Identity
- -