Basic Information

Insect: Pogonus chalceus
Gene Symbol: -
Assembly: GCA_002278615.1
Location: CM008237.1:1348677-1354650[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.7e-05 0.0023 18.5 0.7 1 23 164 186 164 186 0.95

2 15 0.0012 0.11 13.3 1.1 3 23 194 214 193 214 0.99

3 15 5.2e-05 0.0046 17.6 0.1 1 23 327 349 327 349 0.98

4 15 0.097 8.6 7.3 0.2 1 23 355 378 355 378 0.96

5 15 1.4e-05 0.0012 19.4 4.1 1 23 405 427 405 427 0.98

6 15 0.0015 0.13 13.0 0.1 1 23 442 464 442 464 0.95

7 15 0.0052 0.46 11.3 2.4 1 23 470 493 470 493 0.94

8 15 0.028 2.5 9.0 2.2 2 19 501 518 501 519 0.96

9 15 1.2e-05 0.0011 19.6 4.0 1 23 528 550 528 550 0.97

10 15 0.058 5.1 8.0 0.3 2 23 556 577 555 577 0.97

11 15 8.5e-06 0.00075 20.1 0.4 1 23 585 607 585 607 0.98

12 15 0.0037 0.33 11.8 0.2 3 23 615 635 613 635 0.97

13 15 0.00012 0.01 16.5 0.3 1 23 641 663 641 664 0.95

14 15 0.016 1.4 9.8 1.5 1 23 678 700 678 700 0.96

15 15 0.00062 0.055 14.2 0.2 1 20 1071 1090 1071 1093 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.7e-05	0.0023	18.5	0.7	1	23	164	186	164	186	0.95
2	15	0.0012	0.11	13.3	1.1	3	23	194	214	193	214	0.99
3	15	5.2e-05	0.0046	17.6	0.1	1	23	327	349	327	349	0.98
4	15	0.097	8.6	7.3	0.2	1	23	355	378	355	378	0.96
5	15	1.4e-05	0.0012	19.4	4.1	1	23	405	427	405	427	0.98
6	15	0.0015	0.13	13.0	0.1	1	23	442	464	442	464	0.95
7	15	0.0052	0.46	11.3	2.4	1	23	470	493	470	493	0.94
8	15	0.028	2.5	9.0	2.2	2	19	501	518	501	519	0.96
9	15	1.2e-05	0.0011	19.6	4.0	1	23	528	550	528	550	0.97
10	15	0.058	5.1	8.0	0.3	2	23	556	577	555	577	0.97
11	15	8.5e-06	0.00075	20.1	0.4	1	23	585	607	585	607	0.98
12	15	0.0037	0.33	11.8	0.2	3	23	615	635	613	635	0.97
13	15	0.00012	0.01	16.5	0.3	1	23	641	663	641	664	0.95
14	15	0.016	1.4	9.8	1.5	1	23	678	700	678	700	0.96
15	15	0.00062	0.055	14.2	0.2	1	20	1071	1090	1071	1093	0.93

Sequence Information

Coding Sequence: ATGGAAGAAGCAACCTTCACTCTTTGGCATGATGGTACCAATGTGGTACATCGGGAAGAAGTTATATGCGGTATTGATAATGGATGTGCCATCATTCAAGAAGGTGCCTCTGATCACGAAAGTTATGGAGAAGTTTGTGagGAGGTGGTTGTCCAACAAGATGTGGCGGAAACGATTGTACCGGAAATTGGACCGGGACAAATAGAAACTAGTGTCCCTACAGATTCCGGTAACATAGTTTATTTAACGTCCAACAATATGTTGGTTGTCCCTCAATCTTCGAACGCTGGTGGCTCCGTAGTCTTTCAGGACAATTTCATGGAGTGTCAGGTGACTGAAGAAGTAATAACCGACGACTGGGTTAACAACCAAGGTGAAGAACGCGTCGAGATACCAGTAGGCGAAGTAGGAGCAGAGCAACAGATCGAATATGACGACATGGAAGTGCCTCTGCCAATTGATCAAGATGAGTATACTGCAAGTCGTCCATACCCTTGTGACTTCTGCAGCCGGCGGTTCCGGAAGAAAGCCAACCTGATGAATCACATGGTCGCACATCAGACGGATCGGCCACACGGTTGTAACCTATGTGGTGCTCGATACATCCGCAAGTGTGATCTCATgaaccatttaaaaattcatgctTATGTTCCTGATCCAGATGCGTTGGATGAGGATGAGCTACCACCACTTTTAGAATCCGACCCCGAAAAATCATCGAAGAAAAAGAAACAGGCGAAGAAACGAAAACAAATCTCATCACCATCGAAACCGAAAATCAAACAAGAAGCGCTCGACTCCTCTGATGATAGGTACGAAGTACCGTCGCGTTCATACAACTACGTTGAAGAGGACGTTCGTTTGCTAACAGAAATGGAAAATCACGTGAATTCAAATCGAAACGACAGCTTTAGTAGCTACAACGAAATGGACAACATGACCGAAGTGCGATATCCTATTTTAGATCCTCGTAAACCTTTTGTTTGTCAACATTGTGGTGTTGCGTTTGCACGAGAAAAAGCTCTAGCTTCGCATGCTCGAATACATGCTGGCGATTCTCCATTTGAATGTGAAACTTGCAATGAAATGTTCTGGGATGTGCAAGTTTTACGTGAACATGTTCGTACTAAACACGGCGGTATGGGTGCTACAGAATCAGACTATGAAGATATAGATGATGATGATTATGTAGATGATAGTAAATACGgcgatttttattgtaaagtttGTGGCATGAGATTCCATCGGACTGATTTACTGCGTCGTCATATGCGAAACCACGATGACGTTAAAGAAGAATTCAATACTGATAATGAGTACGGGCATGTATGCAATGTATGCGGACAATCATTTAATGAAGCTCTGGATTTATTAGCTCACGCAGAAAGCCATGCCCGACAGTTAGGTCACCGTTGTATGTTATGTGGTGAATGCTTTACAGATGAAACTTCAATGGCAAATCATGTAATGCAACGACATGGTAAAAATATGCCACCAAACACTTGCATGCTTTGTGGGAAAACATGTAAAGATCGTCGGACACTTTTAAAACACTCCTGGGATCATTCTCGTGAGAAATTATTCTCTTGTTCTAAATGTGGAAAGAGTTTCCACAATAAGGCAAGATTGAAACGTCACATGGTTTCGCATCGCAATAAAGCAGTTCAATGTGACATTTGTGGAGATGATTTCCCTGACGGTAGATCTTTAATGAACCATAGACATAGTCATAGTAATATATCTGGCAGACAGTTTCCATGTAGAGAATGTGGTAAAACTTTTGGAAGTAGAAGTTCGCAACAAATTCACATTCGTATTCATACTGGTGAGCGCCCTTACGGTTGTCGTTTTTGTTGGAAAGCGTTTGCGGATGGTGGTACATTACGCAAACATGAACGTATTCATACGGGCGAGAAGCCATATGCATGCGCTGTATGTCCTCGTGCTTTCAATCAACGAGTTGTACTACGTGAACATATCCGGTCTCATCACTCAGGACCAGATCCACAATATAGTCACACCATGACTCCATATTGTTGTGCAGTTTGTAACGATATGTTCTCTACATCCcaagatttaataatacactTAATACATCATTGTGATTTAAATACTGCAATGAAACGACAGCCACAAGTTGGACCACGGAAATATAAACGTAGGAGAAAATTGAAACCCCATGAATTGGAATTGATATCTAATAGAGTAGATAATGATAACGATGATGTATTTTCTGATTCCGATGAAAAAAGTAGCAGTAGAAGAAGAAGTACATCAAAGAGAACACCAAGTAAACAACCAATAACACCAAAAgtggaaaataaaacaaatctagAAAAAGATTACGAGAGTGTATTCCAAAGCTTTGAATCAGCAAGTCAAATAATCAGTTCAATTGTGAATTCAAAACCAAGTAGTACACGcggtagaaaaaaattgaaaccgTCTGAAGCACAAATGTCTTCGATGCCTTCTAGACCAAAAATGATCCATACACAAAAGACACGTGTGCCTATAGATGCACAAGGAGATGGTCGAGGTCGTCACAAgacaaaaacattaataacacGAACAACACCTGCTGAACATGTTATTAAAGAGAAAGAAAAGCCTATATCAAGTGGTGAGCGCAATCGTCCTCGCACTAAAAATGTCAGTTATCATGTACTACAAGTTGAAAAATTACCTTTAGCCACTTTTCCAGATCATGAAGGCGATCAAAACGGCGATCAGAATGATTATCAAGATCAAGAGAACACGAATCCCGACTACCATACAATGATTATCAAACCTGATCCCGATGAACCaaagaataatgaaataattgaaatggaATATCAAACAGTTGAAACTGAAATTCCAGATGTGGCTAATGAAGAAACAATACTTGCACAAGTTGATGATGTTCACGCTGTTGCAAATTCCAGTCAGTCGACACCAGTTAGTATgataaaagtaacaaaaaataccGGTAAACGTAACAATAGTTTAACACCGGGTCGACATATCATCGGACCAGGCAATAAAGTTATTAGAATTGTTAAGGGCGGTATGCTAGTTAGTAAAACGATTAAAAAAGAACCTGAATTACTTGTTCCAGATTTAGACACCAATCATCAACAACTACTAAAACAAGTTAAACAAGAGATTATTGAGCCGAGTCCGCTGCACGAATTGGCTGAACTGTCAATGCAACATGCACAGAATCAATTCCGGTGCGAAATGTGCAGTGCTACTTTCACAGATCGTTCACAACTTTTGATGCATGTGCCCGTTCATATCTGA
Protein Sequence: MEEATFTLWHDGTNVVHREEVICGIDNGCAIIQEGASDHESYGEVCEEVVVQQDVAETIVPEIGPGQIETSVPTDSGNIVYLTSNNMLVVPQSSNAGGSVVFQDNFMECQVTEEVITDDWVNNQGEERVEIPVGEVGAEQQIEYDDMEVPLPIDQDEYTASRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGARYIRKCDLMNHLKIHAYVPDPDALDEDELPPLLESDPEKSSKKKKQAKKRKQISSPSKPKIKQEALDSSDDRYEVPSRSYNYVEEDVRLLTEMENHVNSNRNDSFSSYNEMDNMTEVRYPILDPRKPFVCQHCGVAFAREKALASHARIHAGDSPFECETCNEMFWDVQVLREHVRTKHGGMGATESDYEDIDDDDYVDDSKYGDFYCKVCGMRFHRTDLLRRHMRNHDDVKEEFNTDNEYGHVCNVCGQSFNEALDLLAHAESHARQLGHRCMLCGECFTDETSMANHVMQRHGKNMPPNTCMLCGKTCKDRRTLLKHSWDHSREKLFSCSKCGKSFHNKARLKRHMVSHRNKAVQCDICGDDFPDGRSLMNHRHSHSNISGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPQYSHTMTPYCCAVCNDMFSTSQDLIIHLIHHCDLNTAMKRQPQVGPRKYKRRRKLKPHELELISNRVDNDNDDVFSDSDEKSSSRRRSTSKRTPSKQPITPKVENKTNLEKDYESVFQSFESASQIISSIVNSKPSSTRGRKKLKPSEAQMSSMPSRPKMIHTQKTRVPIDAQGDGRGRHKTKTLITRTTPAEHVIKEKEKPISSGERNRPRTKNVSYHVLQVEKLPLATFPDHEGDQNGDQNDYQDQENTNPDYHTMIIKPDPDEPKNNEIIEMEYQTVETEIPDVANEETILAQVDDVHAVANSSQSTPVSMIKVTKNTGKRNNSLTPGRHIIGPGNKVIRIVKGGMLVSKTIKKEPELLVPDLDTNHQQLLKQVKQEIIEPSPLHELAELSMQHAQNQFRCEMCSATFTDRSQLLMHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01104958;
90% Identity: iTF_01229945;
80% Identity: -