Pcha002827.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- MBD-R2
- Assembly
- GCA_002278615.1
- Location
- CM008235.1:9486951-9491403[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-16 3.3e-12 46.1 0.0 8 70 433 493 427 499 0.94 2 2 0.4 2.1e+03 -1.4 0.0 42 60 1082 1100 1081 1111 0.84
Sequence Information
- Coding Sequence
- ATGGGGCGTAAATGTAACGTGTTAGATTGTCCATCGGATTCAAAGCGCCCCGAAGATAATGGTGTTACATTTCACAAAATGCCCTTTCATCCAGATTTACGTCCGAAATGGATTGAATTATGTCGTATTCCAGAAGACCGACAgctaaataaagtaatatatgtatgttccCGACATTTCCGTCGGAcagatttttgtaatttcaaaGGCACAAAGTATATGTTACGACAAGGTGCTTTGCCCTCCGTTTTCCCTTGGACTAGaagctttattaaaatctCCTCAAAATGCTCTACATCGGGGGATGAAAGTAAAAGCTCAGAAACATCAGATATTAAAACGGAACCTATGGATACAGACTCTAAGTCAAATGATGATCTAGAAATGCCAAAAATTAAAGAGGAACCAATGGACGAAGATGATTTcaaacctaaaataaaagataacgaTAAACCACCTAAGATTAAAAAAGAAGTCGATgataaaccaattaaaattaagaaagaaGGAGATGATAAACCTCCTAAATTAAAAcgagaaaatataattgttaaaaaagagAATGATACACCAGCCGCCTTACCTCCGAAACTAAAAGATGAAACACCAATTTCTATTAACTTTTGCGCTGGAACACGAATAGAAGCAAATGATTTTAACGATAAGTGGTATCCGGCTACAATTTTAGAAGTAGATTACGATGAAAATGAggtttttgttgaatttgatCGGAATTTAAATAGAGCAAATGAGTGGATACCTATGGATAGCTCTAGATTACGTCCTTATATTGGTACTAGCAATGCAGAATTTGCCGTCGGGGAAAAATGTATGGCTACTTGGATGAATTCTTGTAGTAAATTTCCTgctacaattaaaaaagttcttGATGGcgATAGTTACGAAGTATTATTTGATGAtggttttacaaaaattttaaaacaatgtaaacttacaaaaataaaagatccGAATAATATGCCTCTTGCACCGAAAGCACCTGTACCACATGCTGCACCACTTTTTGAACCAGTTATTGGTTCAAAAGAAGACCGTAGAGAACGCAaacgaaaattaaatgttgCTCAATTATTTGGTCGCAAAAAACCAAAATCTGATGATATGTTTGAAGATGATAAACAATCTGTAGAAGATTTTCCGGCAACtccaactgCACCGACTCTTCCTTATTCAGAAGGGGAAGAATGGACTTGCCGTTGGTTGAATGGCGAACCTATTGGCATTGAATCAACTTTAGAAAGTCCTGATGGACAAAGGCGCTCAATTATTGTTCCAGATCATAGATTACCTACCGGATGGGAAAAACATTTAACTCAAAGAATGTACGGGAATTCGGCTGGAAAATGGGATGCTATTTTAGTcaaTCCCGATGGTAAAAAGTTCGCAAATcggcaacaaataaaaatgtggtTTGAAGAAAACAAACAAGAATTAAACCTAGAACAATTCGATTTTTCTTTGCATATAAATCGCGCTAAAAAATTAGGTCTATACGAAATTACTGATCCGGAATTGACTGCATCTATTTTAAAGCCAACACCAATGCAAAAACCTCCAGGAGCTAAATCTAAAGGTACAACAAAAGCTCAAAGCACTAAACTTTCAACACCGAAAGGTACCAGTAATGTGGCATTACCTACTACACCAGAAACGCCTGTTCATGAATCTGAAATCGAAGAGGAAACtgacaACGCAggaagtttaaaaatactcCACGAAAACGATAGTTACAAGTGTCCGATAGAAGGATGCGGTAAAAATTTTCGTAAGGAAAATTTAGCGCAAATGCATATAAAACATTACCATCCagaatattctaaattaatcgGCTCTACACCGAACGTGGCCGATCTAGCGTACGCGAGAACAGTAGGTGAACATATCGACGAAATAATACCACAAAAAACCAAATCCGTATCTTCTCCGcttattgaaaaagaaaaacctATTAAAACAGAATCCACCCCGAAACCAAAATCaacaattaaagtattaactCCGAAAACAACAGCTAAAGACGATACAAAAGCAGTTGAACCATTACAAAGTATTAATATCCCTAAACCTGTTTCGAAAGATTCCGAAATAATTCGTTTATTAAACAGCGAaccaaaaagtaaaattgattCTATTTTCGATTCAGTTGAACTTCATAAACAGTTAACATCTGAAGAGCCACTAAATCCTGGAGAAAAATATCCAGAAATAAGACTGCGcgatttattgaataaagcTGAACCGATTCCTATTAAAAAGGATGAAAATTATAGACCACCGGGTATAAAAACGTTACTTCCAGTTCATAGAAATACAGAAGAACCTAAAATGGAAGTTGATAGTGATGCAGATAAACCTTATTTATCTGTGAAACAAGATAAAGGTAAAGCACATAGAAAGCGACAATCTTCAGATAGTCGAAGACGGCAATCATTGAAATATGATACAGATGAAATGTCTGATTATTATGAGGCTGATAGTAGGTCTCAAGATTCGTTTAAAGGGAAGACTCCTGTTGAAACACTTCCACCACCTCCTCCGCAAGAGGGGCAGGTTATTATTGAAGGAGGGGAAGTTATTCGATTGGTCCATATGCGAAGcgaagaaataataaactgtACTTGCGGTATAACTGAAGAAGATGGCCTTATGATACAATGTGAGTTATGTCTTTGCTGGCAACATGCTCATTGCAATAACATCGCGAAAGAAAATGAAGTTCCagataaatatgtttgtaaaatttgtaaaaacccGCAACGAATGCGTCAATCGAAGAAATACGTACATGACCAAGAGTGGGTAAAACAAGGAGTACTTGCAACTGCGAATTATCACTCGAAAGATGAAAAATTACTTGAGAAACGTTTTGAATTACTTCGAAAGTCCCATGAACTTAGCGGTTGTATGGTAGAATTAAATGAGTATCTTCATAATTTACggattaaattgaatattgctGGGAATAAAGACCAccctaaattatatttatgggcTAAACAATGGGACAAACCTTTACCAGACAATACATTAAACTTACAAAAACCTGACTCATTAAAACATGACAAAAAGGACGAAAACTTTAACAGAAGTTTTACAAGTTCTGATCATAGTTATATTAAAGGCTCGACATTCAGTGAATTagctttaaaaacaatgttacAACCAGAAGAAATAAAACCCGAAATAAGCACATCAGAAATCGACTTGAAATTAGAAGACACTAAGATAAAATCCGAATcagaattaatatcaattttagaaGACAACGAACCATCAACATCAACTTCAAACcctgaaataaaagaagaaaatgatGATAATCCCGAATTTCCGAAAATCgatttaaattcaatgatcgttaataatttaactgatAAAATAGATCCGAAAGATGAAGTTTTAACTAAAGAAGAagctttaaattcaattacaaGCGGAATCTTAAGTACAAGTTCATTAGACTTAGCGTTGAGTCAAAGTGATTTAGAGAGATTATCAACGCTTGCTCAATTGAGCGGTGTTGTTTCAGCACAGGATGTGACTCAACAAATACATATACCACAACCGGAAGCTGTTATTGATTCTGCTGATTGTAGATTGAACTTGTTAGATCATGTTACACATTATCAAAGTCTTGTTGAGCAAAGATTAAACGCCGTTGAAGCTGCATTATGCGaattggAAGAAGAAGATCCAAGTGCTATATTAGATGATGatgaaactgaaattaaaacaaaacaaacgcTACAAATGCTTATTAGAGATCTTGGTACTATGCGAGAAATTGcagctttaaataattaa
- Protein Sequence
- MGRKCNVLDCPSDSKRPEDNGVTFHKMPFHPDLRPKWIELCRIPEDRQLNKVIYVCSRHFRRTDFCNFKGTKYMLRQGALPSVFPWTRSFIKISSKCSTSGDESKSSETSDIKTEPMDTDSKSNDDLEMPKIKEEPMDEDDFKPKIKDNDKPPKIKKEVDDKPIKIKKEGDDKPPKLKRENIIVKKENDTPAALPPKLKDETPISINFCAGTRIEANDFNDKWYPATILEVDYDENEVFVEFDRNLNRANEWIPMDSSRLRPYIGTSNAEFAVGEKCMATWMNSCSKFPATIKKVLDGDSYEVLFDDGFTKILKQCKLTKIKDPNNMPLAPKAPVPHAAPLFEPVIGSKEDRRERKRKLNVAQLFGRKKPKSDDMFEDDKQSVEDFPATPTAPTLPYSEGEEWTCRWLNGEPIGIESTLESPDGQRRSIIVPDHRLPTGWEKHLTQRMYGNSAGKWDAILVNPDGKKFANRQQIKMWFEENKQELNLEQFDFSLHINRAKKLGLYEITDPELTASILKPTPMQKPPGAKSKGTTKAQSTKLSTPKGTSNVALPTTPETPVHESEIEEETDNAGSLKILHENDSYKCPIEGCGKNFRKENLAQMHIKHYHPEYSKLIGSTPNVADLAYARTVGEHIDEIIPQKTKSVSSPLIEKEKPIKTESTPKPKSTIKVLTPKTTAKDDTKAVEPLQSINIPKPVSKDSEIIRLLNSEPKSKIDSIFDSVELHKQLTSEEPLNPGEKYPEIRLRDLLNKAEPIPIKKDENYRPPGIKTLLPVHRNTEEPKMEVDSDADKPYLSVKQDKGKAHRKRQSSDSRRRQSLKYDTDEMSDYYEADSRSQDSFKGKTPVETLPPPPPQEGQVIIEGGEVIRLVHMRSEEIINCTCGITEEDGLMIQCELCLCWQHAHCNNIAKENEVPDKYVCKICKNPQRMRQSKKYVHDQEWVKQGVLATANYHSKDEKLLEKRFELLRKSHELSGCMVELNEYLHNLRIKLNIAGNKDHPKLYLWAKQWDKPLPDNTLNLQKPDSLKHDKKDENFNRSFTSSDHSYIKGSTFSELALKTMLQPEEIKPEISTSEIDLKLEDTKIKSESELISILEDNEPSTSTSNPEIKEENDDNPEFPKIDLNSMIVNNLTDKIDPKDEVLTKEEALNSITSGILSTSSLDLALSQSDLERLSTLAQLSGVVSAQDVTQQIHIPQPEAVIDSADCRLNLLDHVTHYQSLVEQRLNAVEAALCELEEEDPSAILDDDETEIKTKQTLQMLIRDLGTMREIAALNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229777;
- 90% Identity
- iTF_01229777;
- 80% Identity
- iTF_01229777;