Pcha001536.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- SMARCC2
- Assembly
- GCA_002278615.1
- Location
- NEEE01001847.1:64877-69251[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.8 4e+03 -1.7 0.3 2 10 167 175 166 176 0.86 2 3 1.1 1.2e+03 -0.1 0.1 33 43 197 207 193 209 0.87 3 3 3.8e-13 4e-10 39.9 0.1 3 42 595 634 593 638 0.93
Sequence Information
- Coding Sequence
- atgatagcaTTTGGTCCGAAAAAGGACGGTAGtccaaattctaaattttttgagGCTCCAGAAACAGTAACATTATTTGATGGAGTGCGACAATGGTTGTTAAAAAACTGCAAGaagtatGTGCAAGCAGATCCACCTACGAATAAAAGTTTATCAGTTCTTGTTATTCAATTACTACAATTCCAAGAGGATAATTTCAGCAAAAATGCTAGTAAACCTCCACTCACTAGAATTCCTatgaaatgttttatggaTTTTAAACCAAACGGAGGATTATGTCATATATTTGCCACGGCCTATCGTTATAAAAGCGAACAAGTATGGCGAAGATTCGATTTACAGagtcCTTCTCGTTTGGACCGTAATACTGATATGTTTGTGTCGATTGAACGTACattgatacaaaataaatgccTTACAGTTCCTGTTATATATGTAAGACAAGAAGTAGACAAAGCAACAATCGCAAAGGCgaaagaaatttgtaaaagacATAACGGTGTATGGACAGAAACTGAAGAAGATGCTACGCATATATTATACCCACATTGTGATCCATTTGAAGAAGAATATGCTAGACCAACAATGCGTAgagataaaaatgttatgttGCATTGGTATTATTTCCCTGATTCATACGATACATGGGTAAACACAGAAATTGGATTAGATATACCAGAGAATCCAACACAACACACAGGCCAGTGGCGTGTTAGTATAACCTGGCTTCTGGAGACAGACCAATACAACGAGTGGATGACCGAAGAAGACTACGAAGTGGACGAATCCGGCAGGAAGAAGGTCCATAAACTTCGGATGTCCGTGGAGGATCTTATGAATCCGAATGGTGATCCGGATCGCACGAAAAAGAAGCAAAAAAGGAAACGTTCCCCGTCGCCCCCGTTAAAACAAGGTAAACGAAAAAGTGGTAGGAGTCCAGCTGttggtaataaaaaacatCGTTTTGGTGACGATATTGAAACTGAGGATCTAACGAAAGATATGGATGATCCAATTCCAGAACCAAATGTTGTTGAAGTTGCGGTCACGAAACCATGTCCGACAACGCTCAGCAACAAGAAAGATCATGAACTTCAGCCGTTGAAAGGTGGTTCCGTTACAGATTTAGATGAAGCAGAAGATAAAGGAGAGGATTCTCAAACTGGTAAAACAAGTGATACTAATACACAAGAGTTTATTAGTAAAGACGATGGCCAGGAAGATAATGTCACTGAACAAACACATCATATTGTTGTACCATCGTATTCTGCGTGGTTTGATTATAATTCAATACATGTTATAGAAAAGCGTGCGTTACCCGAATTTTTTAACggcaaaaataaatctaaaacacctgaaatttatttagcttatcgtaattttatgattgataCTTATCGGTTAAATCCGACTGAATATATAACTAGTACGGCTTGTAGACGTAACTTAGCAGGCGATGTATGTGCAATTATGCGAGTCCATGCGTTTTTAGAACAATGgggtttaataaattaccaaGTTGATACAGAATCTAGGCCGACTGCAATGGGTCCACCACCAACATCTCATTTCCACGTATTATCTGATACTCCGTCAGGTTTACAGCCTGTTAATCCGCCAAAAACTCCTCAACCAAGCGCGGCTAAATCTCTACtagatttagataaaaatgatattaagaAACCGGAAATTGAACAACCGATGCAGTTTGGCTTAAAACTTGATCAGTATGTCCGAAAACCAGCAGCTATGCGTAATAAAACTGCAGCTTCTCTTACAAGGGACTGGACCGAACAAGAAACATTATTACTCCTAGAAGGTTTAGAAATGTACAAAGACGATTGGAATAAAGTTTGCGAGCATGTTGGTACACGAACACAAGACGAATGTATCTTAAATTTCTTACGACTACCAATCGAAGATCCGTATTTAGAGGATTACGAGGCTGGTGGTGCTTTAGGTCCGTTGGCTTATCAACCAATACCTTTCAGCAAATCTGGTAATCCAATCATGTCGACTGTAGCATTCCTTGCGTCGATAGTAGACCCGCGAGTTGCCGCGGCTGCTGCGAAATCCGCTATGGAAGAGTTCGCAAATATAAAAGACGAAGTCCCGGCGGCGTTGCTCGATGCACATTTGAAAAACGTCGAAGCTTCATCGACTGATGGTAAATATGACCCAGCTGCTGGTTTAGCGAGTAGTGGTATTGCTGGAACTCTTCCAGAGAAAGACgaagaagataaaattaagaaagatACAGATATAAAAGAGGATGAAAGCGAAAAAAGTACGACACCAAATGCCACTGAAAATGCTGatcaaaagaaaaatggtTTAGAACGAACTGAACCAATGGAAGTAGATAAACCTGAAGAGAAAGTTAAATTAGATTCCGCTGTCACTGTAAAAGAAGAAGTTAAAGAAAAAGATTCTTCAAGTACGAAAGATTCGGAGGAGGGTACTTCAACAAGTGGACAAACAGACTCCACACAGAAAATAGTCAAAGATGCGCAAATGCAAATGGCAGCCGCCGCGGCTTTAGCTGCGGCCGCAGTCAAAGCCAAACATTTAGCCGCTGTAGAGGagcgtaaaataaaatcattagtaGCATTACTTGTAGAAACacaaatgaaaaaactcgAAATTAAATTACGACATTTCGAGGAATTAGAAACAACAATGGAACGCGAGCGGGAAGGCTTAGAGTATCAGAGACAACAGTTAATTACAGAGCGGCAACAGTTCCATCTAGAGCAGCTGAAAGCGGCGGAGTTCAGAGCCCGCCAGCAGGCTCATCAGCGACTGCAAGCTGAACAAGGTGGTGGACAATGGCACCAACCAGTGCTTCACCCTCCTACAGGTTCAGCAGGACCCTCACAAGTTCCAACAAGTACAGCTGGCCCTCAACTGACAAATATCCCTCAATCAAATTCGAATGAACCAAATCAGACGTCGACTCCTACACCCCCTTCGCCGCAAGCGGCTGCAGTGTCCAACCCACCTTCGACTGGTCCTCACCAAGGATCAAtgtga
- Protein Sequence
- MIAFGPKKDGSPNSKFFEAPETVTLFDGVRQWLLKNCKKYVQADPPTNKSLSVLVIQLLQFQEDNFSKNASKPPLTRIPMKCFMDFKPNGGLCHIFATAYRYKSEQVWRRFDLQSPSRLDRNTDMFVSIERTLIQNKCLTVPVIYVRQEVDKATIAKAKEICKRHNGVWTETEEDATHILYPHCDPFEEEYARPTMRRDKNVMLHWYYFPDSYDTWVNTEIGLDIPENPTQHTGQWRVSITWLLETDQYNEWMTEEDYEVDESGRKKVHKLRMSVEDLMNPNGDPDRTKKKQKRKRSPSPPLKQGKRKSGRSPAVGNKKHRFGDDIETEDLTKDMDDPIPEPNVVEVAVTKPCPTTLSNKKDHELQPLKGGSVTDLDEAEDKGEDSQTGKTSDTNTQEFISKDDGQEDNVTEQTHHIVVPSYSAWFDYNSIHVIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDTESRPTAMGPPPTSHFHVLSDTPSGLQPVNPPKTPQPSAAKSLLDLDKNDIKKPEIEQPMQFGLKLDQYVRKPAAMRNKTAASLTRDWTEQETLLLLEGLEMYKDDWNKVCEHVGTRTQDECILNFLRLPIEDPYLEDYEAGGALGPLAYQPIPFSKSGNPIMSTVAFLASIVDPRVAAAAAKSAMEEFANIKDEVPAALLDAHLKNVEASSTDGKYDPAAGLASSGIAGTLPEKDEEDKIKKDTDIKEDESEKSTTPNATENADQKKNGLERTEPMEVDKPEEKVKLDSAVTVKEEVKEKDSSSTKDSEEGTSTSGQTDSTQKIVKDAQMQMAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHQRLQAEQGGGQWHQPVLHPPTGSAGPSQVPTSTAGPQLTNIPQSNSNEPNQTSTPTPPSPQAAAVSNPPSTGPHQGSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00768182;
- 90% Identity
- -
- 80% Identity
- -