Pcha010745.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- retn
- Assembly
- GCA_002278615.1
- Location
- NEEE01001591.1:104330-118379[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.5e-15 2.9e-11 43.9 0.0 12 79 35 100 21 101 0.88 2 2 2.1 6.4e+03 -2.1 0.0 28 38 238 248 204 273 0.74
Sequence Information
- Coding Sequence
- ATGtccgaaaaaataaataacgaatGCCCTATATTTGACGCTACTGAACGTCCGATAGAACAagaaaaaacatgtaaaaaaattcatgatGTGTGTATAGAGGTATATAGAGTGTCTGgaACGCCGATAAATAGATTACCCATCATGGCGAAATCTGTCTTAGATCTCTATGAATTATATAATCTTGTTATTGCTAGAGGAGGTTTAGTTGATGTGATTAACAAGAAATTATGGCAGGAAATTATTAAAGGATTGCATTTACCTTCGTCTATTACTTCAGCAGCTTTTACTTTAAGAACACAACGATTAAGCACTCCTGCAGAACTGCAAGCAGCAATTGACGGCAACAGAAGAGAAGGAAGAAGAAGCAGTTATGGTACATATTCAGAAATGGTCCAAAGAAGTCCAATTCCATCTTCACAAATGTCACCATTGTCTTTAGTTACACAACAACAAACTTTAGGAGTTCGAGGAGGATTAGGAGCTGGATTGGGGCTTCACAATGGGGCACATCACCCCAGCCACCCTCAACCACTTGGACAACCCCCTACAggtgGCCCAGTTCCAGGTTTAGCCCCATCAGAGTTCGAAGCACGCATGGTCGAATATGTGAAACTCCTCAACAAAGAATTAAGAAGTTCAGCAGCAACGCCACCAAGACAAGGGTCATCATCACCTCCTAGTGCCACATCGCCATTAAATCCTCTAGAAATGTCGCGTCTGACATTATGGAAcctctataataataatcctaCTCCTCCATGTCCTGAACCTCAAAAAGAGGCGTTAAATTTATCTGAAACTACAAATTCTGTTTCCAATTCTGTTAAAAGAGAACCAGAAAGGGATCCATCACCTCCAGCGAAAAGACTGCTACATGAAGACGATAGAAATGGACCCATTACGCCACCTAGcacacatattaaaattaatagtcgagGTGATGCTCGGAACGGGGACAATTCCCTAGTAGTGAGTATGGAATTAAACGGAATCATGTATCAAGGAGTATTATTCGCACAGACTTCGCCAGGATCGCGTTCAGCGAGGCTAGCATCTTGA
- Protein Sequence
- MSEKINNECPIFDATERPIEQEKTCKKIHDVCIEVYRVSGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQRLSTPAELQAAIDGNRREGRRSSYGTYSEMVQRSPIPSSQMSPLSLVTQQQTLGVRGGLGAGLGLHNGAHHPSHPQPLGQPPTGGPVPGLAPSEFEARMVEYVKLLNKELRSSAATPPRQGSSSPPSATSPLNPLEMSRLTLWNLYNNNPTPPCPEPQKEALNLSETTNSVSNSVKREPERDPSPPAKRLLHEDDRNGPITPPSTHIKINSRGDARNGDNSLVVSMELNGIMYQGVLFAQTSPGSRSARLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872844;
- 90% Identity
- -
- 80% Identity
- -